Isoniazid-resistant Mycobacterium tuberculosis strains arising from mutations in two different regions of the katG gene.

OBJECTIVE: To analyze and compare the mutations in two different regions of the katG gene, which is responsible for isoniazid (INH) resistance. METHODS: We analyzed 97 multidrug-resistant Mycobacterium tuberculosis strains isolated in cultures of sputum samples obtained from the Professor Hélio Fraga Referral Center, in Brasília, Brazil. Another 6 INH-sensitive strains did not present mutations and were included as controls. We used PCR to amplify two regions of the katG gene (GenBank accession no. U06258)-region 1, (from codon 1 to codon 119) and region 2 (from codon 267 to codon 504)-which were then sequenced in order to identify mutations. RESULTS: Seven strains were resistant to INH and did not contain mutations in either region. Thirty strains carried mutations in region 1, which was characterized by a high number of deletions, especially at codon 4 (24 strains). Region 2 carried 83 point mutations, especially at codon 315, and there was a serine-to-threonine (AGC-to-ACC) substitution in 73 of those cases. The analysis of region 2 allowed INH resistance to be diagnosed in 81.4% of the strains. Nine strains had mutations exclusively in region 1, which allowed the proportion of INH-resistant strains identified to be increased to 90.6%. CONCLUSIONS: The number of mutations at codon 315 was high, which is consistent with cases described in Brazil and in other countries, and the analysis of region 1 resulted in a 9.2% increase in the rate at which mutations were identified.

Resistência do Mycobacterium tuberculosis à isoniazida por mutações em duas regiões diferentes do gene katG / Isoniazid-resistant Mycobacterium tuberculosis strains arising from mutations in two different regions of the katG gene

OBJETIVO: Analisar e comparar as mutações em duas regiões diferentes do gene katG, responsáveis pela resistência à isoniazida (INH). MÉTODOS: As análises foram feitas em 97 cepas de Mycobacterium tuberculosis multirresistentes isoladas de culturas de escarro provenientes do Centro de Referência Professor Hélio Fraga. Outras 6 cepas, sensíveis à INH, não apresentaram mutações e foram incluídas como controle. Duas regiões do gene katG (GenBank nº de acesso U06258) - região 1, do códon 1 até o códon 119, e região 2, do códon 267 até o códon 504 - foram amplificadas por PCR e sequenciadas para a identificação das mutações. RESULTADOS: Sete cepas eram resistentes à INH e não mostraram mutação nas duas regiões. Trinta cepas apresentaram mutações na região 1, que se caracterizou por um grande número de deleções, especialmente no códon 4 (24 cepas). A região 2 mostrou 83 mutações pontuais, principalmente no códon 315, com 73 casos de troca de serina (AGC) para treonina (ACC). A análise da região 2 permitiu o diagnóstico de resistência à INH em 81,4 por cento das cepas. Nove cepas tiveram mutações somente na região 1, e isso permitiu o aumento de identificação de cepas resistentes à INH para 90,6 por cento. CONCLUSÕES: O número de mutações do códon 315 foi elevado, compatível com os casos descritos no Brasil e em outros países, e a análise da região 1 aumentou a detecção de mutações em mais 9,2 por cento.

OBJECTIVE: To analyze and compare the mutations in two different regions of the katG gene, which is responsible for isoniazid (INH) resistance. METHODS: We analyzed 97 multidrug-resistant Mycobacterium tuberculosis strains isolated in cultures of sputum samples obtained from the Professor Hélio Fraga Referral Center, in Brasília, Brazil. Another 6 INH-sensitive strains did not present mutations and were included as controls. We used PCR to amplify two regions of the katG gene (GenBank accession no. U06258)-region 1, (from codon 1 to codon 119) and region 2 (from codon 267 to codon 504)-which were then sequenced in order to identify mutations. RESULTS: Seven strains were resistant to INH and did not contain mutations in either region. Thirty strains carried mutations in region 1, which was characterized by a high number of deletions, especially at codon 4 (24 strains). Region 2 carried 83 point mutations, especially at codon 315, and there was a serine-to-threonine (AGC-to-ACC) substitution in 73 of those cases. The analysis of region 2 allowed INH resistance to be diagnosed in 81.4 percent of the strains. Nine strains had mutations exclusively in region 1, which allowed the proportion of INH-resistant strains identified to be increased to 90.6 percent. CONCLUSIONS: The number of mutations at codon 315 was high, which is consistent with cases described in Brazil and in other countries, and the analysis of region 1 resulted in a 9.2 percent increase in the rate at which mutations were identified.

Clinical evolution of a group of patients with multidrug-resistant TB treated at a referral center in the city of Rio de Janeiro, Brazil.

OBJECTIVE: To analyze the clinical characteristics and evolution of a group of patients with positive sputum cultures for multidrug-resistant (MDR) Mycobacterium tuberculosis and treated at a referral center in the city of Rio de Janeiro, Brazil. METHODS: Based on the positive results in sputum cultures for MDR M. tuberculosis, 50 patients were selected, and their clinical data were obtained from the Brazilian Ministry of Health MDR-TB Database. The frequencies of noncompliance, relapses, failures and previous treatments for TB up to diagnosis of MDR-TB were compiled. The radiological patterns were classified as unilateral or bilateral, and with or without cavitation. Two years after the end of the standard treatment for MDR-TB, the outcome (cure, failure, noncompliance or death) for each patient was evaluated and reassessed every two years. The post-treatment follow-up period was eight years. RESULTS: The mean number of previous treatments was 2.3 +/- 0.9. The mean interval between the initial diagnosis and the development of MDR-TB was 2.0 +/- 1.7 years. Two years after the initial treatment for MDR-TB, 2 patients had abandoned treatment, 8 had died, 18 had been cured, and 22 had presented treatment failure. The bivariate analysis showed that bilateral pulmonary involvement and cavitary pattern markedly reduced the chances for cure, with a relative risk of 1-0.6 (40%) and 1-0.7 (30%), respectively. At the end of the follow-up period, 2 patients had abandoned treatment, 9 had presented treatment failure, 17 had been cured, and 22 had died. CONCLUSIONS: Bilateral pulmonary involvement and cavity pattern greatly reduced the chances for cure of the patients with MDR-TB. Most patients who presented treatment failure died within the 8-year follow-up period.

Evolução clínica de um grupo de pacientes com TB multirresistente atendidos em um centro de referência na cidade do Rio de Janeiro / Clinical evolution of a group of patients with multidrug-resistant TB treated at a referral center in the city of Rio de Janeiro, Brazil

OBJETIVO: Analisar as características clínicas e a evolução de um grupo de pacientes com culturas de escarro positivas para Mycobacterium tuberculosis multirresistente (MR) e tratados em um centro de referência no município do Rio de Janeiro. MÉTODOS: A partir dos resultados de M. tuberculosis MR em culturas de escarro, foram selecionados 50 pacientes cujos dados clínicos foram obtidos através do Banco de Dados TBMR do Ministério da Saúde. Foram considerados a frequência de abandono, as recidivas, as falências e os tratamentos prévios para TB até o diagnóstico de TBMR. O padrão radiológico foi classificado em uni- ou bilateral, e cavitário ou não. Dois anos após o término do tratamento padronizado para TBMR, o desfecho (cura, falência, abandono ou óbito) de cada paciente foi avaliado e repetido a cada dois anos. O período de seguimento foi de oito anos após o tratamento. RESULTADOS: A média do número de tratamentos prévios foi de 2,3 ± 0,9. O tempo médio entre o diagnóstico inicial e o desenvolvimento de TBMR foi de 2 ± 1,7 anos. Após dois anos do tratamento inicial para TBMR houve 2 abandonos, 8 óbitos, 18 curas e 22 falências. A análise bivariada mostrou que o comprometimento pulmonar bilateral e o padrão cavitário reduziram acentuadamente a chance de cura, com risco relativo de 1-0,6 (40 por cento) e 1-0,7 (30 por cento), respectivamente. Ao final do seguimento, houve 2 abandonos, 9 falências, 17 curas e 22 óbitos. CONCLUSÕES: O comprometimento pulmonar bilateral e lesões cavitárias reduziram a possibilidade de cura dos pacientes com TBMR. A maioria dos pacientes com falha de tratamento evoluiu para óbito no período de 8 anos.

OBJECTIVE: To analyze the clinical characteristics and evolution of a group of patients with positive sputum cultures for multidrug-resistant (MDR) Mycobacterium tuberculosis and treated at a referral center in the city of Rio de Janeiro, Brazil. METHODS: Based on the positive results in sputum cultures for MDR M. tuberculosis, 50 patients were selected, and their clinical data were obtained from the Brazilian Ministry of Health MDR-TB Database. The frequencies of noncompliance, relapses, failures and previous treatments for TB up to diagnosis of MDR-TB were compiled. The radiological patterns were classified as unilateral or bilateral, and with or without cavitation. Two years after the end of the standard treatment for MDR-TB, the outcome (cure, failure, noncompliance or death) for each patient was evaluated and reassessed every two years. The post-treatment follow-up period was eight years. RESULTS: The mean number of previous treatments was 2.3 ± 0.9. The mean interval between the initial diagnosis and the development of MDR-TB was 2.0 ± 1.7 years. Two years after the initial treatment for MDR-TB, 2 patients had abandoned treatment, 8 had died, 18 had been cured, and 22 had presented treatment failure. The bivariate analysis showed that bilateral pulmonary involvement and cavitary pattern markedly reduced the chances for cure, with a relative risk of 1-0.6 (40 percent) and 1-0.7 (30 percent), respectively. At the end of the follow-up period, 2 patients had abandoned treatment, 9 had presented treatment failure, 17 had been cured, and 22 had died. CONCLUSIONS: Bilateral pulmonary involvement and cavity pattern greatly reduced the chances for cure of the patients with MDR-TB. Most patients who presented treatment failure died within the 8-year follow-up period.

Improved laboratory safety by decontamination of unstained sputum smears for acid-fast microscopy.

Tubercle bacilli may survive in unstained heat-fixed sputum smears and may be an infection risk to laboratory staff. We compared the effectiveness of 1% and 5% sodium hypochlorite, 5% phenol, 2% glutaraldehyde, and 3.7% formalin in killing Mycobacterium tuberculosis present in smears prepared from 51 sputum samples. The smears were decontaminated by the tube and slide techniques. Phenol at 5%, glutaraldehyde at 2%, and buffered formalin at 3.7% for 1 min (tube technique) or for 10 min (slide technique) were effective in decontaminating sputum smears and preserved cell morphology and quantitative acid-fast microscopy results.

Análise da confiabilidade dos testetes de sensibilidade a Mycobacterium tuberculosis no Brasil no período de 2000 a 2004

O teste de sensibilidade às drogas utilizadas no tratamento da tuberculose, isoniazida (INH), rifampicina (RMP), estreptomicina (SM), etambutol (EMB), realizado pela grande maioria dos Laboratórios Centrais (LACENs) nas capitais dos estados de Alagoas, Amapá, Amazonas, Bahia, Ceará, Distrito Federal, Espírito Santo, Goiás, Maranhão, Mato Grosso do Sul, Minas Gerais, Paraíba, Paraná, Pernambuco, Rio Grande do Sul, Rio Grande do Norte, Rio de Janeiro, Piauí e Santa Catarina, foram avaliados quanto à confiabilidade no período de 2000 a 2004. As 659 culturas analisadas mostraram, pelo coeficiente de Kappa, concordância máxima de 83% referentes à RMP e à INH. Já o EMB e a SM produziram resultados concordantes moderados, na ordem de 48% e de 55%, respectivamente. A dificuldade de adesão dos estados ao projeto possibilitou a analise de aproximadamente 2% dos exames realizados no período. Apesar disto, esta ação permitiu a melhoria do desempenho de alguns laboratórios, assim como a implementação de outros para a participação efetiva na vigilância epidemiológica da resistência em tuberculose

Evaluation of indirect susceptibility testing of Mycobacterium tuberculosis to the first- and second-line, and alternative drugs by the newer MB/BacT system.

In order to evaluate the Organon Teknika MB/BacT system used for testing indirect susceptibility to the alternative drugs ofloxacin (OFLO), amikacin (AMI), and rifabutin (RIF), and to the usual drugs of standard treatment regimes such as rifampin (RMP), isoniazid (INH), pyrazinamide (PZA), streptomycin (SM), ethambutol (EMB), and ethionamide (ETH), cultures of clinical specimens from 117 patients with pulmonary tuberculosis under multidrug-resistant investigation, admitted sequentially for examination from 2001 to 2002, were studied. Fifty of the Mycobacterium tuberculosis cultures were inoculated into the gold-standard BACTEC 460 TB (Becton Dickinson) for studying resistance to AMI, RIF, and OFLO, and the remaining 67 were inoculated into Lowenstein Jensen (LJ) medium (the gold standard currently used in Brazil) for studying resistance to RMP, INH, PZA, SM, EMB, and ETH. We observed 100% sensitivity for AMI (80.8-100), RIF (80.8-100), and OFLO (78.1-100); and 100% specificity for AMI (85.4-100), RIF (85.4-100), and OFLO (86.7-100) compared to the BACTEC system. Comparing the results obtained in LJ we observed 100% sensitivity for RMP (80-100), followed by INH-95% (81.8-99.1), EMB-94.7% (71.9-99.7), and 100% specificity for all drugs tested except for PZA-98.3 (89.5-99.9) at 95% confidence interval. The results showed a high level of accuracy and demonstrated that the fully automated, non-radiometric MB/BacT system is indicated for routine use in susceptibility testing in public health laboratories.

Evaluation of indirect susceptibility testing of Mycobacterium tuberculosis to the first- and second-line, and alternative drugs by the newer MB/BacT system

In order to evaluate the Organon Teknika MB/BacT system used for testing indirect susceptibility to the alternative drugs ofloxacin (OFLO), amikacin (AMI), and rifabutin (RIF), and to the usual drugs of standard treatment regimes such as rifampin (RMP), isoniazid (INH), pyrazinamide (PZA), streptomycin (SM), ethambutol (EMB), and ethionamide (ETH), cultures of clinical specimens from 117 patients with pulmonary tuberculosis under multidrug-resistant investigation, admitted sequentially for examination from 2001 to 2002, were studied. Fifty of the Mycobacterium tuberculosis cultures were inoculated into the gold-standard BACTEC 460 TB (Becton Dickinson) for studying resistance to AMI, RIF, and OFLO, and the remaining 67 were inoculated into Lowenstein Jensen (LJ) medium (the gold standard currently used in Brazil) for studying resistance to RMP, INH, PZA, SM, EMB, and ETH. We observed 100 percent sensitivity for AMI (80.8-100), RIF (80.8-100), and OFLO (78.1-100); and 100 percent specificity for AMI (85.4-100), RIF (85.4-100), and OFLO (86.7-100) compared to the BACTEC system. Comparing the results obtained in LJ we observed 100 percent sensitivity for RMP (80-100), followed by INH - 95 percent (81.8-99.1), EMB - 94.7 percent (71.9-99.7), and 100 percent specificity for all drugs tested except for PZA - 98.3 (89.5-99.9) at 95 percent confidence interval. The results showed a high level of accuracy and demonstrated that the fully automated, non-radiometric MB/BacT system is indicated for routine use in susceptibility testing in public health laboratories

Direct sensitivity test of the MB/BacT system.

In order to evaluate the direct-method test of sensitivity to drugs used in the principal tuberculosis treatment regimes, in the Organon Teknika MB/BacT system, we tested 50 sputum samples positive to microscopy taken from patients with pulmonary tuberculosis and with clinical indications for an antibiogram, admitted sequentially for examination during the routine of the reference laboratory. The material was treated v/v with 23% trisodium phosphate solution, incubated for 24 h at 35 degrees C, and neutralized v/v with 20% monosodium phosphate solution. The material was then centrifuged and the sediment inoculated into flasks containing Rifampin - 2 micro g/ml, Isoniazid - 0.2 micro g/ml, Pyrazinamide - 100 micro g/ml, Ethambutol - 2.5 micro g/ml, Ethionamide - 1.25 micro g/ml, and Streptomycin - 2 micro g/ml. The tests were evaluated using the indirect method in the BACTEC 460 TB (Becton Dickinson) system as the gold standard. The results showed that the Rifampin test performed best, i.e., 100% sensitivity at 95% Confidence Interval (82.2-100) and 100% specificity at 95% Confidence Interval (84.5-100), followed by Isoniazid and Pyrazinamide. In this experiment, 92% of the materials showed a final reading in 30 days; this period represents the time for primary isolation as well as the results of the sensitivity profile, and is within Centers for Disease Control and Prevention recommendations regarding time for performance of the antibiogram. The inoculated flasks showed no contamination during the experiment. The MB/BacT is shown to be a reliable, rapid, fully automated nonradiometric system for the tuberculosis antibiogram.

Direct sensitivity test of the MB/BacT system

In order to evaluate the direct-method test of sensitivity to drugs used in the principal tuberculosis treatment regimes, in the Organon Teknika MB/BacT system, we tested 50 sputum samples positive to microscopy taken from patients with pulmonary tuberculosis and with clinical indications for an antibiogram, admitted sequentially for examination during the routine of the reference laboratory. The material was treated v/v with 23 percent trisodium phosphate solution, incubated for 24 h at 35ºC, and neutralized v/v with 20 percent monosodium phosphate solution. The material was then centrifuged and the sediment inoculated into flasks containing Rifampin - 2 æg/ml, Isoniazid - 0.2 æg/ml, Pyrazinamide - 100 æg/ml, Ethambutol - 2.5 æg/ml, Ethionamide - 1.25 æg/ml, and Streptomycin - 2 æg/ml. The tests were evaluated using the indirect method in the BACTEC 460 TB (Becton Dickinson) system as the gold standard. The results showed that the Rifampin test performed best, i.e., 100 percent sensitivity at 95 percent Confidence Interval (82.2-100) and 100 percent specificity at 95 percent Confidence Interval (84.5-100), followed by Isoniazid and Pyrazinamide. In this experiment, 92 percent of the materials showed a final reading in 30 days; this period represents the time for primary isolation as well as the results of the sensitivity profile, and is within Centers for Disease Control and Prevention recommendations regarding time for performance of the antibiogram. The inoculated flasks showed no contamination during the experiment. The MB/BacT is shown to be a reliable, rapid, fully automated nonradiometric system for the tuberculosis antibiogram

Survival of tubercle bacilli in heat-fixed and stained sputum smears

We used a slide culture technique to detect tubercle bacilli surviving in sputum smears (n=46) after conventional heat fixation and Ziehl-Neelsen staining. In all heat-fixed sputum smears, tubercle bacilli survived after time 0 (n=22), 24 h (n=7), 48 h (n=7), 72 h (n=4), and seven days (n=6). None of the stained sputum smears showed growth on slide cultures. Viable tubercle bacilli remaining in heat-fixed sputum smears for at least seven days may present an infection risk to laboratory staff. Thus, sputum smears should be stained immediately by the Ziehl-Neelsen method or stored in a safe container to avoid transmission of tuberculosis

Micobactérias "não tuberculosas" no Brasil

O laboratório de referência nacional para micobactérias do Centro de Referência Prof. Hélio Fraga recebe culturas da grande maioria dos laboratórios que isolam micobactérias “não tuberculosas“ (MNT) no país, que necessitem identificar ou mesmo confirmar a identificação de seus isolados. O objetivo deste trabalho foi analisar os dados obtidos com a identificação das micobactérias no período de 1994 a 1999, por espécie, região geográfica, material clínico e infecção pelo vírus da imunodeficiência adquirida (HIV). As 590 culturas foram identificadas através dos métodos bioquímicos clássicos e sonda genética. Observamos o isolamento preponderante de M.avium-intracellulare sobre as demais espécies (quarenta e quatro,quatro porcento), seguidos de M. kansasii e M.fortuitum. Dos pacientes com suspeita de micobacteriose, as regões sudeste e sul contribuíram com (cinquenta e sete,seis porcento) do total. Dentre os 431 pacientes estudados, 106 foram considerados como casos de micobacterioses, sendo a forma pulmonar mais freqüente (sessenta,treis porcento). Acreditamos que o maior percentual de isolamento nas regiões sudeste e sul possa estar correlacionado com maior cobertura laboratorial, pela alta prevalência da tuberculose nestas regiões, favorecendo também o isolamento das MNT. Porém não excluída a possibilidade de haver maior prevalência de micobacterioses nestas mesmas regiões, principalmente quando se faz associação com a Síndrome da Imunodeficiência Adquirida. A informação é imprescindível para caracterização destas doenças e um percentual importante das culturas identificadas não mencionava a forma clínica e nem a infecção pelo HIV. Outras espécies patogênicas recentemente descritas em outros países ainda não foram identificadas pelo nosso laboratório

Comparaçäo do crescimento em corda do bacilo da tuberculose nos caldos sangue lisado seletivo e Middlebrook / Comparison of the growth in cord of the tubercle bacilli in a selective lysed blood broth and Middlebrook medium

Com objetivo de utilizar uma técnica de cultura em lâmina em futuros experimentos em nosso laboratório, comparamos neste estudo o crescimento em corda do bacilo da tuberculose em caldo sangue lisado seletivo (SLS) e no meio de Middlebrook (7H9), empregando como inóculo esfregaços de escarro obtidos de 12 pacientes com tuberculose pulmonar. Cada esfregaço foi confeccionado, em duplicata, em uma área de 10x25 mm de uma lâmina 13x76 mm, utilizando-se alça bacteriológica descartável de 10µL. Uma série de esfregaços (n=48) foi fixada pelo calor, outra série (n=48) foi fixada e corada pela técnica de Ziehl-Neelsen e uma terceira série (n=48) näo fixada pelo calor, foi usada como controle positivo. As lâminas foram cultivadas a 37 graus celsius nos caldos SLS 7H9 durante 7 dias. Todos os esfregaços controle apresentaram crescimento em corda. Entretanto, nos esfregaços fixados pelo calor a positividade no caldo SLS foi de 12/12 (100 porcento) contra 10/12 (83 porcento) no meio 7H9. Nenhum dos esfregaços fixados e corados (Zehl-Neelsen) mostrou crescimento nas culturas em lâminas. Os resultados sugerem que o caldo seletivo sangue lisado é levemente superior ao meio de Middlebrook para o cultivo em lâmina de esfregaços do bacilo da tuberculose fixados pelo calor

Laboratório de tuberculose do CRPHF quinze anos de atividades

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A tuberculose na Internet

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Atividade pirazinamidásica e suscetibilidade a pirazinamida (PZA) de Mycobacterium tuberculosis isolado de pacientes com tuberculose pulmonar recorrente ou virgens de tratamento / Pyrazinamidasic activity and susceptibilidade to pyrazinamide of the Mycobacterium tuberculosis from patients with recurrent pulmonary tuberculosis in those without treatment

A suscetibilidade de amostras de M. tuberculosis in vitro para a PZA e a atividade pirazinamidásica pelo método de Wayne foram determidadas em 94 amostras isoladas de escarro de pacientes tuberculosos. cinqüenta e quatro amostras de pacientes virgens de tratamento e 40 dos com tuberculose pulmonar recorrente foram analisadas no que diz respeito à correlaçäo ente a resistência à PZA e a ausência de atividade pirazinamidásica. Com um valor preditivo de 0,46, näo houve concordância para 7/13 casos obtidos a partir de amostras PZA-resistentes, que nem sempre foram PZAase negativas. Os resultados mostraram uma sensibilidade de 91% e uma especificidade de 46% quanto à probabilidade de o teste de PZAase indicar a suscetibilidade das amostras micobacterianas à PZA. Algum cuidado deve ser tomado na definiçiao da resistência quando se leva em conta apenas o teste de Wayne, embora ele seja rápido, simples e facilmente reprodutível para detectar a suscetibilidade à PZA

Estudo da resistência primária no Brasil no período de 1986 a 1988

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