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1.
Structure ; 9(8): 725-38, 2001 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-11587647

RESUMO

BACKGROUND: Catalases are important antioxidant metalloenzymes that catalyze disproportionation of hydrogen peroxide, forming dioxygen and water. Two families of catalases are known, one having a heme cofactor, and the other, a structurally distinct family containing nonheme manganese. We have solved the structure of the mesophilic manganese catalase from Lactobacillus plantarum and its azide-inhibited complex. RESULTS: The crystal structure of the native enzyme has been solved at 1.8 A resolution by molecular replacement, and the azide complex of the native protein has been solved at 1.4 A resolution. The hexameric structure of the holoenzyme is stabilized by extensive intersubunit contacts, including a beta zipper and a structural calcium ion crosslinking neighboring subunits. Each subunit contains a dimanganese active site, accessed by a single substrate channel lined by charged residues. The manganese ions are linked by a mu1,3-bridging glutamate carboxylate and two mu-bridging solvent oxygens that electronically couple the metal centers. The active site region includes two residues (Arg147 and Glu178) that appear to be unique to the Lactobacillus plantarum catalase. CONCLUSIONS: A comparison of L. plantarum and T. thermophilus catalase structures reveals the existence of two distinct structural classes, differing in monomer design and the organization of their active sites, within the manganese catalase family. These differences have important implications for catalysis and may reflect distinct biological functions for the two enzymes, with the L. plantarum enzyme serving as a catalase, while the T. thermophilus enzyme may function as a catalase/peroxidase.


Assuntos
Catalase/química , Lactobacillus/enzimologia , Azidas/química , Sítios de Ligação , Cálcio/química , Cristalografia por Raios X , Manganês/química , Modelos Moleculares , Oxigênio/química , Dobramento de Proteína , Thermus thermophilus/enzimologia , Água/química
2.
Acta Crystallogr D Biol Crystallogr ; 57(Pt 9): 1209-18, 2001 Sep.
Artigo em Inglês | MEDLINE | ID: mdl-11526312

RESUMO

Enzymes of the glyoxylate-bypass pathway are potential targets for the control of many human diseases caused by such pathogens as Mycobacteria and Leishmania. Isocitrate lyase catalyses the first committed step in this pathway and the structure of this tetrameric enzyme from Escherichia coli has been determined at 2.1 A resolution. E. coli isocitrate lyase, like the enzyme from other prokaryotes, is located in the cytoplasm, whereas in plants, protozoa, algae and fungi this enzyme is found localized in glyoxysomes. Comparison of the structure of the prokaryotic isocitrate lyase with that from the eukaryote Aspergillus nidulans reveals a different domain structure following the deletion of approximately 100 residues from the larger eukaryotic enzyme. Despite this, the active sites of the prokaryotic and eukaryotic enzymes are very closely related, including the apparent disorder of two equivalent segments of the protein that are known to be involved in a conformational change as part of the enzyme's catalytic cycle.


Assuntos
Escherichia coli/enzimologia , Isocitrato Liase/química , Alanina/genética , Sequência de Aminoácidos , Substituição de Aminoácidos , Aspergillus nidulans/enzimologia , Sítios de Ligação , Catálise , Cristalografia por Raios X , Cisteína/genética , Isocitrato Liase/metabolismo , Modelos Moleculares , Dados de Sequência Molecular , Fosfopiruvato Hidratase/química , Conformação Proteica , Dobramento de Proteína , Estrutura Quaternária de Proteína , Estrutura Terciária de Proteína , Homologia de Sequência de Aminoácidos
3.
Antimicrob Agents Chemother ; 45(2): 563-70, 2001 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-11158755

RESUMO

Peptide deformylase (PDF) is an essential bacterial metalloenzyme which deformylates the N-formylmethionine of newly synthesized polypeptides and as such represents a novel target for antibacterial chemotherapy. To identify novel PDF inhibitors, we screened a metalloenzyme inhibitor library and identified an N-formyl-hydroxylamine derivative, BB-3497, and a related natural hydroxamic acid antibiotic, actinonin, as potent and selective inhibitors of PDF. To elucidate the interactions that contribute to the binding affinity of these inhibitors, we determined the crystal structures of BB-3497 and actinonin bound to Escherichia coli PDF at resolutions of 2.1 and 1.75 A, respectively. In both complexes, the active-site metal atom was pentacoordinated by the side chains of Cys 90, His 132, and His 136 and the two oxygen atoms of N-formyl-hydroxylamine or hydroxamate. BB-3497 had activity against gram-positive bacteria, including methicillin-resistant Staphylococcus aureus and vancomycin-resistant Enterococcus faecalis, and activity against some gram-negative bacteria. Time-kill analysis showed that the mode of action of BB-3497 was primarily bacteriostatic. The mechanism of resistance was via mutations within the formyltransferase gene, as previously described for actinonin. While actinonin and its derivatives have not been used clinically because of their poor pharmacokinetic properties, BB-3497 was shown to be orally bioavailable. A single oral dose of BB-3497 given 1 h after intraperitoneal injection of S. aureus Smith or methicillin-resistant S. aureus protected mice from infection with median effective doses of 8 and 14 mg/kg of body weight, respectively. These data validate PDF as a novel target for the design of a new generation of antibacterial agents.


Assuntos
Amidoidrolases , Aminopeptidases/antagonistas & inibidores , Antibacterianos/farmacologia , Inibidores Enzimáticos/farmacologia , Ácidos Hidroxâmicos/farmacologia , Animais , Antibacterianos/química , Antibacterianos/farmacocinética , Cristalografia por Raios X , Resistência Microbiana a Medicamentos , Inibidores Enzimáticos/química , Inibidores Enzimáticos/farmacocinética , Escherichia coli/efeitos dos fármacos , Escherichia coli/enzimologia , Ácidos Hidroxâmicos/química , Ácidos Hidroxâmicos/farmacocinética , Testes de Sensibilidade Microbiana , Mutação/genética , Ratos , Reação em Cadeia da Polimerase Via Transcriptase Reversa , Fatores de Tempo
4.
J Biol Inorg Chem ; 5(3): 354-63, 2000 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-10907746

RESUMO

We compare the interaction of nitric oxide with the S states of the oxygen evolving complex (OEC) of photosystem II and the dinuclear Mn cluster of Thermus thermophilus catalase. Flash fluorescence studies indicate that the S3 state of the OEC in the presence of ca. 0.6 mM NO is reduced to the S1 with an apparent halftime of ca. 0.4 s at about 18 degrees C, compared with a biphasic decay, with approximate halftimes of 28 s for S3 to S2 and 140 s for S2 to S1 in the absence of NO. Under similar conditions the S2 state is reduced by NO to the S1 state with an approximate halftime of 2 s. These results extend a recent study indicating a slow reduction of the S1 state at -30 degrees C, via the S0 and S(-1) states, to a Mn(II)-Mn(III) state resembling the corresponding state in catalase. The reductive mode of action of NO is repeated with the di-Mn cluster of catalase: the Mn(III)-Mn(III) redox state is reduced to the Mn(II)-Mn(II) state via the intermediate Mn(II)-Mn(III) state. The kinetics of this reduction suggest a decreasing reduction potential with decreasing oxidation state, similar to what is observed with the active states of the OEC. What is unique about the OEC is the rapid interaction of NO with the S3 state of the OEC, which is compatible with a metalloradical character of this state.


Assuntos
Catalase/química , Membranas Intracelulares/metabolismo , Manganês/química , Óxido Nítrico/química , Oxirredutases/química , Complexo de Proteínas do Centro de Reação Fotossintética/química , Espectroscopia de Ressonância de Spin Eletrônica , Cinética , Óxido Nítrico/metabolismo , Oxirredução , Complexo de Proteína do Fotossistema II , Thermus thermophilus/metabolismo , Raios X
5.
Biochemistry ; 38(28): 9126-36, 1999 Jul 13.
Artigo em Inglês | MEDLINE | ID: mdl-10413487

RESUMO

Manganese catalases contain a binuclear manganese cluster that catalyzes the redox dismutation of hydrogen peroxide, interconverting between dimanganese(II) [(2,2)] and dimanganese(III) [(3,3)] oxidation states during turnover. We have investigated the oxidized (3,3) states of the homologous enzymes from Thermus thermophilus and Lactobacillus plantarum using a combination of optical absorption, CD, MCD, and EPR spectroscopies as sensitive probes of the electronic structure and protein environment for the active site metal clusters. Comparison of results for these two enzymes allows the essential features of the active sites to be recognized and the differences identified. For both enzymes, preparations having the highest catalytic activity have diamagnetic ground states, consistent with the bis-mu-bridging dimanganese core structure that has been defined crystallographically. Oxidative damage and exogenous ligand binding perturb the core structure of LPC, converting the enzyme to a distinct form in which the cluster becomes paramagnetic as a result of altered exchange coupling mediated by the bridging ligands. The TTC cluster does not exhibit this sensitivity to ligand binding, implying a different reactivity for the bridges in that enzyme. A mechanism is proposed involving distinct coordination modes for peroxide substrate in each of the two half-reactions for enzyme turnover.


Assuntos
Catalase/química , Lactobacillus/enzimologia , Manganês/química , Thermus thermophilus/enzimologia , Dicroísmo Circular , Espectroscopia de Ressonância de Spin Eletrônica , Fluoretos/química , Modelos Moleculares , Oxirredução , Compostos de Potássio/química , Espectrofotometria Ultravioleta , Titulometria
6.
Structure ; 6(3): 363-76, 1998 Mar 15.
Artigo em Inglês | MEDLINE | ID: mdl-9551557

RESUMO

BACKGROUND: The biosynthesis of key metabolic components is of major interest to biologists. Studies of de novo purine synthesis are aimed at obtaining a deeper understanding of this central pathway and the development of effective chemotherapeutic agents. Phosphoribosylaminoimidazolesuccinocarboxamide (SAICAR) synthase catalyses the seventh step out of ten in the biosynthesis of purine nucleotides. To date, only one structure of an enzyme involved in purine biosynthesis has been reported: adenylosuccinate synthetase, which catalyses the first committed step in the synthesis of AMP from IMP. RESULTS: We report the first three-dimensional structure of a SAICAR synthase, from Saccharomyces cerevisiae. It is a monomer with three domains. The first two domains consist of antiparallel beta sheets and the third is composed of two alpha helices. There is a long deep cleft made up of residues from all three domains. Comparison of SAICAR synthases by alignment of their sequences reveals a number of conserved residues, mostly located in the cleft. The presence of two sulphate ions bound in the cleft, the structure of SAICAR synthase in complex with ATP and a comparison of this structure with that of other ATP-dependent proteins point to the interdomain cleft as the location of the active site. CONCLUSIONS: The topology of the first domain of SAICAR synthase resembles that of the N-terminal domain of proteins belonging to the cyclic AMP-dependent protein kinase family. The fold of the second domain is similar to that of members of the D-alanine:D-alanine ligase family. Together these enzymes form a new superfamily of mononucleotide-binding domains. There appears to be no other enzyme, however, which is composed of the same combination of three domains, with the individual topologies found in SAICAR synthase.


Assuntos
Peptídeo Sintases/química , Peptídeo Sintases/metabolismo , Purinas/biossíntese , Trifosfato de Adenosina/metabolismo , Sequência de Aminoácidos , Aminoimidazol Carboxamida/análogos & derivados , Aminoimidazol Carboxamida/metabolismo , Sítios de Ligação , Sequência Conservada , Cristalografia por Raios X , Proteínas Quinases Dependentes de AMP Cíclico/química , Proteínas Quinases Dependentes de AMP Cíclico/metabolismo , Glutationa Sintase/química , Glutationa Sintase/metabolismo , Modelos Moleculares , Dados de Sequência Molecular , Conformação Proteica , Dobramento de Proteína , Ribonucleotídeos/metabolismo , Saccharomyces cerevisiae/enzimologia , Relação Estrutura-Atividade , Sulfatos/química , Sulfatos/metabolismo
7.
J Biol Chem ; 271(15): 8863-8, 1996 Apr 12.
Artigo em Inglês | MEDLINE | ID: mdl-8621527

RESUMO

A heme d prosthetic group with the configuration of a cis-hydroxychlorin gamma-spirolactone has been found in the crystal structures of Penicillium vitale catalase and Escherichia coli catalase hydroperoxidase II (HPII). The absolute stereochemistry of the two heme d chiral carbon atoms has been shown to be identical. For both catalases the heme d is rotated 180 degrees about the axis defined by the alpha-gamma-meso carbon atoms, with respect to the orientation found for heme b in beef liver catalase. Only six residues in the heme pocket, preserved in P. vitale and HPII, differ from those found in the bovine catalase. In the crystal structure of the inactive N201H variant of HPII catalase the prosthetic group remains as heme b, although its orientation is the same as in the wild type enzyme. These structural results confirm the observation that heme d is formed from protoheme in the interior of the catalase molecule through a self-catalyzed reaction.


Assuntos
Catalase/química , Heme/química , Cristalografia por Raios X , Escherichia coli/enzimologia , Hemeproteínas/química , Ligação de Hidrogênio , Modelos Moleculares , Estrutura Molecular , Penicillium/enzimologia
8.
J Biol Chem ; 270(40): 23268-74, 1995 Oct 06.
Artigo em Inglês | MEDLINE | ID: mdl-7559480

RESUMO

The bacterioferritin (BFR) of Escherichia coli is a heme-containing iron storage molecule. It is composed of 24 identical subunits, which form a roughly spherical protein shell surrounding a central iron storage cavity. Each of the 12 heme moieties of BFR possesses bis-methionine axial ligation, a heme coordination scheme so far only found in bacterioferritins. Members of the BFR family contain three partially conserved methionine residues (excluding the initiating methionine) and in this study each was substituted by leucine and/or histidine. The Met52 variants were devoid of heme, whereas the Met31 and Met86 variants possessed full heme complements and were spectroscopically indistinguishable from wild-type BFR. The heme-free Met52 variants appeared to be correctly assembled and were capable of accumulating iron both in vivo and in vitro. No major differences were observed in the overall rate of iron accumulation for BFR-M52H, BFR-M52L, and the wild-type protein. The iron contents of the Met52 variants, as isolated, were at least 4 times greater than for wild-type BFR. This study is consistent with the reported location of the BFR heme site at the 2-fold axis and shows that heme is unnecessary for BFR assembly and iron uptake.


Assuntos
Proteínas de Bactérias , Grupo dos Citocromos b/genética , Ferritinas/genética , Heme/genética , Sequência de Aminoácidos , Sequência de Bases , Sítios de Ligação/genética , Grupo dos Citocromos b/química , Grupo dos Citocromos b/metabolismo , Primers do DNA/genética , Espectroscopia de Ressonância de Spin Eletrônica , Escherichia coli/genética , Escherichia coli/metabolismo , Ferritinas/química , Ferritinas/metabolismo , Genes Bacterianos , Variação Genética , Heme/química , Ferro/metabolismo , Ligantes , Dados de Sequência Molecular , Mutagênese Sítio-Dirigida , Oxirredução , Espectrofotometria
9.
Biochemistry ; 34(20): 6628-39, 1995 May 23.
Artigo em Inglês | MEDLINE | ID: mdl-7756295

RESUMO

The nature of possible protein ligands to the binuclear metal core in manganese catalase from Thermus thermophilus has been addressed by EPR and ESEEM (pulsed EPR) spectroscopies. The three-pulse ESEEM spectrum of the superoxidized Mn(III)Mn(IV) enzyme obtained at 3429 G shows a frequency pattern with peaks at 0.60, 1.45, 2.06, and 5.03 MHz that is assigned to the magnetic coupling in the exact cancellation regime of one 14N atom that coordinates the Mn dimer, with magnetic parameters e2Qq = 2.34 MHz, eta = 0.51, and Aiso = 2.45 MHz. When the enzyme is chemically modified by reductive methylation, dramatic effects are detected both in the CW-EPR spectrum and in the ESEEM data. Spectral simulations of the CW-EPR signal suggest that the alterations in the spectra are related to the properties of the hyperfine coupling tensors of the Mn ions and of the g tensor, which changes from axial symmetry (gparallel - gperpendicular = 0.018) in the untreated catalase to a nearly isotropic symmetry (gparallel - gperpendicular = 0.002) in the modified enzyme. The three-pulse ESEEM spectrum of the catalase is also completely altered after the reductive methylation, with a rather different frequency pattern at 1.57, 2.35, 3.88, and 6.00 MHz. These data are interpreted as indicating that the hyperfine interaction from the coupled 14N donor is profoundly modified by the methylation treatment, changing from Aiso = 2.45 MHz to a larger value. The spectra are compared with ESEEM data obtained on two polynuclear Mn systems with 14N donors: the Mn cluster of Photosystem II inhibited by 14NH4Cl, and the model compound [Mn2(bipy)4(mu-O)2](ClO4)3. It is found that the ESEEM data measured on the untreated Mn(III)Mn(IV) catalase resemble those on the Photosystem II manganese site, suggesting that the coupled 14N coordinates the Mn dimer in an analogous fashion. By analogy to the mode of binding of ammonia in Photosystem II proposed by Britt et al. [Britt, R. D., Zimmermann, J. L., Sauer, K., & Klein, M. P. (1989) J. Am. Chem. Soc. 111, 3522-3532], it is proposed that a 14N atom bridges the two Mn ions in Mn(III)Mn(IV) catalase. By contrast, comparison of the data obtained on the methylated enzyme with those on the model compound suggests that the 14N couplings are similar in both systems; this is indicative of a terminal 14N ligand in the modified catalase.(ABSTRACT TRUNCATED AT 400 WORDS)


Assuntos
Catalase/química , Espectroscopia de Ressonância de Spin Eletrônica , Manganês/química , Thermus thermophilus/enzimologia , Sítios de Ligação , Cromatografia Líquida de Alta Pressão , Metilação , Nitrogênio/química , Complexo de Proteínas do Centro de Reação Fotossintética/química , Complexo de Proteína do Fotossistema II
10.
Biochemistry ; 34(6): 2015-25, 1995 Feb 14.
Artigo em Inglês | MEDLINE | ID: mdl-7849059

RESUMO

The dimanganese (II,II) catalase from Thermus thermophilus, MnCat(II,II), arginase from rat liver, Arg(II,II), and several dimanganese(II,II) compounds, LMn2XY2, which are functional catalase mimics, all possess a pair of coupled Mn(II) ions in their catalytic sites. For each of these, we have measured by EPR spectroscopy the relative energies separating the three lowest electronic states (singlet, triplet, and quintet), described a general method for extracting the individual spectra for these states by multicomponent analysis, and determined the Mn-Mn separation. The triplet-singlet and quintet-singlet energy gaps were modeled well by fitting the temperature dependence of the EPR intensities to a Boltzmann expression for a pair of Mn(II) ions coupled by isotropic Heisenberg spin exchange (-2JS1S2). This dependence indicates diamagnetic ground states with delta E10 (cm-1) = magnitude of 2J = 4 and 11.2 cm-1 for Arg-(II,II)(+borate) and MnCat(II,II)(phosphate), respectively. This large difference in magnitude of 2J reflects either a difference in the bridging ligands or, possibly, a weaker ligand field (larger ionization potential) for the Mn(II) ions in arginase. In n-butanol/CH2Cl2 the triplet-singlet energy gaps for [LMn2(CH3CO2)](C1O4)2 (1), [LMn2(CH3CO2)3] (2), and [LMn2Cl3] (3), where HL = N,N,N',N'-tetrakis(2-methylenebenzimidazole)-1,3-diaminopropan+ ++-2-ol, are 23-24 cm-1. Comparison of the Heisenberg exchange interaction constants for more than 30 dimanganese(II,II) complexes suggests a possible bridging structure of (mu-OH)(mu-carboxylate)1-2 for MnCat(II,II), while the 3-fold weaker coupling in Arg(II,II) suggests mu-aqua in place of mu-hydroxide. EPR spectra of both the triplet and quintet electronic states were extracted and found to exhibit zero-field splittings (ZFS) and resolved 55Mn hyperfine splittings indicating spin-coupled Mn2-(II,II) species. The major ZFS interaction could be attributed to the magnetic dipole-dipole interaction between the Mn(II) ions. A linear correlation is observed between the crystallographically determined Mn-Mn distance and the ZFS of the quintet state (D2) for five dimanganese pairs for which both data sets are available. Using this correlation, the Mn-Mn distance in Arg(II,II) is predicted to be 3.36-3.57 A for the native enzyme (multiple forms) and 3.59 A for MnCat(II,II)(phosphate). Addition of the inhibitor borate to Arg(II,II) simplifies the ZFS, indicative of conversion to a single species with mean Mn-Mn separation of 3.50 A. The second metal ion in dinuclear complexes possessing a shared bridging ligand has been shown to attenuate the strength of the mu-ligand field potential, as monitored by the strength of the single ion ZFS.(ABSTRACT TRUNCATED AT 250 WORDS)


Assuntos
Arginase/química , Catalase/química , Fígado/enzimologia , Manganês/química , Animais , Sítios de Ligação , Cloretos/química , Espectroscopia de Ressonância de Spin Eletrônica , Fosfatos/química , Ratos , Temperatura , Termodinâmica , Thermus thermophilus/enzimologia
11.
Biochemistry ; 33(51): 15433-6, 1994 Dec 27.
Artigo em Inglês | MEDLINE | ID: mdl-7803407

RESUMO

Catalysis of hydrogen peroxide dismutation by the dimanganese catalase from Thermus thermophilus has been measured and found to obey Michaelis-Menton kinetics with no evidence for substrate inhibition at concentrations up to 0.45 M H2O2. Comparison among three dimanganese catalases (Thermus thermophilus, Thermoleophilium album, and Lactobacillus plantarum) reveals that their apparent second-order rate constants, Kcat/Km, differ by at most a factor of 5, even though the individual kinetic constants differ by as much as a factor of 20. This similarity suggests that all three enzymes may have the same rate-determining step. For T. thermophilus catalase we find that kcat/Km approximately kbi, the bimolecular rate constant at limiting substrate concentrations. Thus, the rate of the rate-determining step is unaltered over the entire range of substrate concentrations, unlike T. album and L. plantarum catalases where substrate inhibition has been reported. Comparison to structurally characterized dimanganese complexes and dimetalloproteins (arginase, hemerythrin), which are functional, albeit kinetically slow, catalase mimics, reveals that high catalase activity correlates with a greater number of stronger sigma-ligand donors like anionic carboxylatos vs neutral histidines that stabilize the oxidized Mn2(III,III) state over reduced Mn2(II,II). A critical feature for enzymatic functionality in vivo is suppression of one-electron chemistry leading to formation of the mixed-valence forms, Mn2(III,IV) and Mn2(II,III), which are kinetically inactive or precursors to inactive species, respectively. Evidence is presented from model compounds suggesting that the mu-carboxylato bridge between Mn ions in catalase may play the key role in suppressing formation of these detrimental oxidation states through destabilization of these one-electron redox processes.


Assuntos
Catalase/química , Manganês/química , Metaloproteínas/química , Thermus thermophilus/enzimologia , Catalase/metabolismo , Catálise , Cinética , Metaloproteínas/metabolismo , Oxirredução
12.
Biochemistry ; 32(18): 4912-24, 1993 May 11.
Artigo em Inglês | MEDLINE | ID: mdl-8387822

RESUMO

The 1H hyperfine tensors of the dimanganese(III,IV) oxidation state of the non-heme-type catalase enzyme from the thermophilic bacterium Thermus thermophilus have been measured by electron nuclear double resonance (ENDOR) spectroscopy at pH 6.5-9. These were compared to model dimanganese(III,IV) complexes possessing six-coordinate N4O2, N3O3, and O6 atom donor sets to each Mn and mu-oxo and mu-carboxylato bridging ligands. The lack of 14N hyperfine couplings in the enzyme suggests either O6 or O5N ligand donors to each Mn. Moreover, the two sigma coordination sites on Mn(III) directed at the dz2 orbital cannot be occupied by N ligands. The 1H ENDOR spectrum revealed two types of anisotropic tensors, attributable to two D2O-exchangeable protons on the basis of the magnitude of the electron paramagnetic resonance (EPR) line narrowing in D2O. All six of the 1H hyperfine couplings are proposed to arise from a single displaceable water molecule in the active site, on the basis of their reversible disappearance, upon incubation in D2O or by precipitation from ammonium sulfate, and by simulation of the 1H ENDOR spectrum. The Mn ions are coordinated predominantly by nonmagnetic O atoms lacking covalently bound protons in both alpha and beta positions. This implicates predominantly carboxylato-type ligands (Asp and Glu) and possibly a di-mu-oxo bridge between Mn ions. The latter is supported also by the presence of strong antiferromagnetic coupling. Comparison to other dimetalloproteins also possessing the four-helix bundle structural motif shows that the polyoxo(carboxylato) coordination in catalase differs significantly from the polyhistidine coordination adopted by the diiron(II,II) site in the O2-binding protein myohemerythrin, but resembles the polycarboxylato ligation adopted by the diiron(III,III) site of ribonucleotide reductase. The catalase 1H ENDOR spectrum is essentially identical to that for the exchangeable protons in the active site of the diiron(II,III) state of uteroferrin, an acid phosphatase [Doi et al. (1988) J. Biol. Chem. 263, 5757-5763], and also for a polycarboxylato complex possessing the Mn2(mu-O)2 core with H-bonded water ligands. The 1H ENDOR line shape in catalase could be simulated using a theoretical model suitable for multispin clusters. It treats the two Mn spins as point dipoles which are exchange-coupled. It includes both dipolar and isotropic ligand hyperfine couplings. Using this model, the position of the proton with the largest interaction could be located with respect to the Mn-Mn vector because of the extreme sensitivity of line shape to position.(ABSTRACT TRUNCATED AT 400 WORDS)


Assuntos
Catalase/química , Manganês/química , Thermus thermophilus/enzimologia , Fosfatase Ácida , Sulfato de Amônio/farmacologia , Sítios de Ligação , Catalase/efeitos dos fármacos , Deutério/farmacologia , Óxido de Deutério , Espectroscopia de Ressonância de Spin Eletrônica , Isoenzimas , Ligantes , Metaloproteínas/química , Modelos Químicos , Oxirredução , Fosfatase Ácida Resistente a Tartarato , Água/farmacologia
13.
J Mol Biol ; 228(1): 298-9, 1992 Nov 05.
Artigo em Inglês | MEDLINE | ID: mdl-1447788

RESUMO

Crystals of phosphoribosylaminoimidazolesuccinocarboxamide synthase (EC 6.3.2.6) from the yeast Saccharomyces cerevisiae were grown by the vapor diffusion hanging-drop technique, using ammonium sulfate as the precipitant. The crystals had dimensions up to 1.2 mm. X-ray diffraction experiments indicated a space group of P2(1)2(1)2(1) and unit cell parameters of a = 62.3 A, b = 63.5 A and c = 80.9 A, with one molecule in the asymmetric unit. Native data have been collected to 2.5 A resolution.


Assuntos
Peptídeo Sintases/química , Saccharomyces cerevisiae/enzimologia , Cristalização , Difração de Raios X
14.
FEBS Lett ; 312(2-3): 127-31, 1992 Nov 09.
Artigo em Inglês | MEDLINE | ID: mdl-1426241

RESUMO

The three-dimensional crystal structure of catalase from Micrococcus lysodeikticus has been solved by multiple isomorphous replacement and refined at 1.5 A resolution. The subunit of the tetrameric molecule of 222 symmetry consists of a single polypeptide chain of about 500 amino acid residues and one haem group. The crystals belong to space group P4(2)2(1)2 with unit cell parameters a = b = 106.7 A, c = 106.3 A, and there is one subunit of the tetramer per asymmetric unit. The amino acid sequence has been tentatively determined by computer graphics model building and comparison with the known three-dimensional structure of beef liver catalase and sequences of several other catalases. The atomic model has been refined by Hendrickson and Konnert's least-squares minimisation against 94,315 reflections between 8 A and 1.5 A. The final model consists of 3,977 non-hydrogen atoms of the protein and haem group, 426 water molecules and one sulphate ion. The secondary and tertiary structures of the bacterial catalase have been analyzed and a comparison with the structure of beef liver catalase has been made.


Assuntos
Catalase/química , Micrococcus/enzimologia , Sequência de Aminoácidos , Evolução Biológica , Catalase/metabolismo , Modelos Moleculares , Dados de Sequência Molecular , Conformação Proteica , Homologia de Sequência de Aminoácidos , Difração de Raios X
15.
J Mol Biol ; 188(1): 49-61, 1986 Mar 05.
Artigo em Inglês | MEDLINE | ID: mdl-3712443

RESUMO

The three-dimensional structure analysis of crystalline fungal catalase from Penicillium vitale has been extended to 2.0 A resolution. The crystals belong to space group P3(1)21, with the unit cell parameters of a = b = 144.4 A and c = 133.8 A. The asymmetric unit contains half a tetrameric molecule of 222 symmetry. Each subunit is a single polypeptide chain of approximately 670 amino acid residues and binds one heme group. The amino acid sequence has been tentatively determined by computer graphics model building (using the FRODO system) and comparison with the known sequence of beef liver catalase. The atomic model has been refined by the Hendrickson & Konnert (1981) restrained least-squares program against 68,000 reflections between 5 A and 2 A resolution. The final R-factor is 0.31 after 24 refinement cycles. The secondary and tertiary structure of the catalase has been analyzed.


Assuntos
Catalase , Penicillium/enzimologia , Sequência de Aminoácidos , Aminoácidos/análise , Cristalografia , Heme , Ligação de Hidrogênio , Substâncias Macromoleculares , Modelos Moleculares , Conformação Proteica
16.
J Mol Biol ; 188(1): 63-72, 1986 Mar 05.
Artigo em Inglês | MEDLINE | ID: mdl-3712444

RESUMO

The structures of Penicillium vitale and beef liver catalase have been determined to atomic resolution. Both catalases are tetrameric proteins with deeply buried heme groups. The amino acid sequence of beef liver catalase is known and contains (at least) 506 amino acid residues. Although the sequence of P. vitale catalase has not yet been determined chemically, 670 residues have been built into the 2 A resolution electron density map and have been given tentative assignments. A large portion of each catalase molecule (91% of residues in beef liver catalase and 68% of residues in P. vitale catalase) shows structural homology. The root-mean-square deviation between 458 equivalenced C alpha atoms is 1.17 A. The dissimilar parts include a small fragment of the N-terminal arm and an additional "flavodoxin-like" domain at the carboxy end of the polypeptide chain of P. vitale catalase. In contrast, beef liver catalase contains one bound NADP molecule per subunit in a position equivalent to the chain region, leading to the flavodoxin-like domain, of P. vitale catalase. The position and orientation of the buried heme group in the two catalases, relative to the mutually perpendicular molecular dyad axes, are identical within experimental error. A mostly hydrophobic channel leads to the buried heme group. The surface opening to the channel differs due to the different disposition of the amino-terminal arm and the presence of the additional flavodoxin-like domain in P. vitale catalase. Possible functional implications of these comparisons are discussed.


Assuntos
Catalase , Fígado/enzimologia , Penicillium/enzimologia , Sequência de Aminoácidos , Animais , Evolução Biológica , Bovinos , Clostridium/análise , Cristalografia , Flavodoxina , Heme , Substâncias Macromoleculares , Modelos Moleculares , NADP , Conformação Proteica
17.
Mol Biol (Mosk) ; 16(2): 386-91, 1982.
Artigo em Russo | MEDLINE | ID: mdl-7070390

RESUMO

A comparative calorimetric study of temperature stability of proteins in reversible and nonreversible denaturation has been carried out by means of continuous heating of its concentrated solutions. A wide range of heating rates (vh) was used. The dependence of denaturation temperature Td on the total heating time is quite different in cases of reversible (RNase, Ph 4) and nonreversible (catalase, PH 7) denaturation. At moderate heating rates (vh less than 5 deg/min) the temperature Td does not depend on vh for reversible denaturation in contrast to nonreversible denaturation where Td decreases with the decrease of vh. At high heating rates (vh greater than 10 deg/min) Td increases along with heating rate for both types of denaturation. It is assumed that the dependence of Td on the heating time for catalase at low and moderate heating rates is caused by the nonreversible nature of denaturation process. The increase of Td with vh at high heating rates is connected with superheating of native structure for td greater than 1 degree/vh.


Assuntos
Conformação Proteica , Proteínas , Calorimetria , Catalase , Estabilidade de Medicamentos , Concentração de Íons de Hidrogênio , Cinética , Ribonucleases , Soluções , Temperatura , Fatores de Tempo
19.
Mol Biol (Mosk) ; 13(5): 1189-97, 1979.
Artigo em Russo | MEDLINE | ID: mdl-503065

RESUMO

On the basis of electron microscope data the structure of tubular crystals of catalase has been determined with resolution of approximately 25 A. The symmetry of the helical packing of molecules is 142/17. The three-dimensional reconstruction has been carried out in real space. The catalase molecule consists of four subunits whose centers from a fairly flattened tetrahedron. The molecule has dimensions of 69X87X92 A.


Assuntos
Catalase , Animais , Bovinos , Cristalização , Microscopia Eletrônica , Modelos Moleculares , Conformação Proteica
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