A novel method for identifying coded tags recorded on aquatic acoustic monitoring systems.

Aquatic biotelemetry increasingly relies on using acoustic transmitters ('tags') that enable passive detection of tagged animals using fixed or mobile receivers. Both tracking methods are resource-limited, restricting the spatial area in which movements of highly mobile animals can be measured using proprietary detection systems. Transmissions from tags are recorded by underwater noise monitoring systems designed for other purposes, such as cetacean monitoring devices, which have been widely deployed in the marine environment; however, no tools currently exist to decode these detections, and thus valuable additional information on animal movements may be missed. Here, we describe simple hybrid methods, with potentially wide application, for obtaining information from otherwise unused data sources. The methods were developed using data from moored, acoustic cetacean detectors (C-PODs) and towed passive receiver arrays, often deployed to monitor the vocalisations of cetaceans, but any similarly formatted data source could be used. The method was applied to decode tag detections that were found to have come from two highly mobile fish species, bass (Dicentrarchus labrax) and Twaite shad (Alosa fallax), that had been tagged in other studies. Decoding results were validated using test tags; range testing data were used to demonstrate the relative efficiency of these receiver methods in detecting tags. This approach broadens the range of equipment from which acoustic tag detections can be decoded. Novel detections derived from the method could add significant value to past and present tracking studies at little additional cost, by providing new insights into the movement of mobile animals at sea.

Environment predicts seagrass genotype, phenotype, and associated biodiversity in a temperate ecosystem.

Coastal vegetative ecosystems are among the most threatened in the world, facing multiple anthropogenic stressors. A good example of this is seagrass, which supports carbon capture, coastal stabilization, and biodiversity, but is declining globally at an alarming rate. To understand the causes and consequences of changes to these ecosystems, we need to determine the linkages between different biotic and abiotic components. We used data on the seagrass, Zostera marina, collected by citizen scientists across 300 km of the south coast of the United Kingdom as a case study. We assembled data on seagrass genotype, phenotype, infauna, and associated bathymetry, light, sea surface temperature, and wave and current energy to test hypotheses on the distribution and diversity of this temperate sub-tidal ecosystem. We found spatial structure in population genetics, evident through local assortment of genotypes and isolation by distance across a broader geographic scale. By integrating our molecular data with information on seagrass phenotype and infauna, we demonstrate that these ecosystem components are primarily linked indirectly through the effects of shared environmental factors. It is unusual to examine genotypic, phenotypic, and environmental data in a single study, but this approach can inform both conservation and restoration of seagrass, as well as giving new insights into a widespread and important ecosystem.

Unravelling the Spatial and Temporal Plasticity of Eelgrass Meadows.

The phenotypic plasticity of seagrasses enables them to adapt to changes in environmental conditions and withstand or recover from disturbance. This plasticity was demonstrated in the large variation recorded throughout a suite of bioindicators measured within Zostera marina meadows around Wales and SW England, United Kingdom. Short-term spatial data were analysed alongside long-term monitoring data to determine which bioindicators best described the status of eelgrass meadows subjected to a range of environmental and anthropogenic drivers. Shoot density, leaf length, leaf nutrients (C:N ratio, %N, %P) including stable isotope of δ13C and δ15N provided insight into the longer-term status of the meadows studied and a good indication of the causes of long-term decline. Meadows ranged from those in the Isles of Scilly with little evidence of impact to those in Littlewick in Milford Haven, Wales that showed the highest levels of impacts of all sites. Bioindicators at Littlewick showed clear warning signs of nutrient loading reflected in the long-term decline in shoot density, and prevalence of wasting disease. This study highlights the need for continuous consistent monitoring and the benefits of using extra tools in the form of shoot nutrient analysis to determine causes of decline.

Finding some seagrass optimism in Wales, the case of Zostera noltii.

There exists limited understanding of the long-term dynamics of the seagrass Zostera noltii and how this is influenced by anthropogenic pressures. Milford Haven is a heavily industrialised estuary and also one of the important sites for Zostera sp. in the UK. In this study we examine all available long-term spatial variability and abundance data of Zostera noltii within Milford Haven using historic datasets. Results show that Z. noltii in all sites have shown meadow expansion when compared to the first obtainable records. Little change in abundance over the past 10-15years for the two sites confirms certain seagrass populations to be robust and thriving. We hypothesise that these populations are showing a level of resilience to the high nutrient levels, disturbance and high turbidity present within the water column of the Haven.

Seasonal and diel patterns in cetacean use and foraging at a potential marine renewable energy site.

Marine renewable energy (MRE) developments often coincide with sites frequented by small cetaceans. To understand habitat use and assess potential impact from development, echolocation clicks were recorded with acoustic click loggers (C-PODs) in Swansea Bay, Wales (UK). General Additive Models (GAMs) were applied to assess the effects of covariates including month, hour, tidal range and temperature. Analysis of inter-click intervals allowed the identification of potential foraging events as well as patterns of presence and absence. Data revealed year-round presence of porpoise, with distinct seasonal and diel patterns. Occasional acoustic encounters of dolphins were also recorded. This study provides further evidence of the need for assessing temporal trends in cetacean presence and habitat use in areas considered for development. These findings could assist MRE companies to monitor and mitigate against disturbance from construction, operation and decommissioning activities by avoiding times when porpoise presence and foraging activity is highest in the area.

Protecting the hand that feeds us: seagrass (Zostera marina) serves as commercial juvenile fish habitat.

Although fisheries are of major economic and food security importance we still know little about specific juvenile habitats that support such production. This is a major issue given the degradation to and lack of protection afforded to potential juvenile habitats such as seagrass meadows. In the present study we investigate the role of seagrass in supporting juvenile fish of commercial value. By assessing seagrass relative to adjacent sand we determined the presence of abundant juvenile fish. Nine commercial species were recorded and the most abundant of these were Plaice, Pollock and Herring. We provide the first quantitative evidence of the presence of juvenile fish of commercial value in seagrass surrounding Great Britain. Although the species that we found in seagrass as juveniles are not obligate seagrass users the resources that seagrass meadows offer to these fish provide significant long-term fitness benefits, potentially enhancing the whole population.