Your browser doesn't support javascript.
loading
Mostrar: 20 | 50 | 100
Resultados 1 - 20 de 41
Filtrar
Mais filtros










Base de dados
Intervalo de ano de publicação
1.
Aktuelle Urol ; 53(6): 517-525, 2022 12.
Artigo em Alemão | MEDLINE | ID: mdl-36423612

RESUMO

INTRODUCTION: Patients with prostate cancer often present with reduced bone mineral density. We herein present real-world data (RWD) regarding osteoprotection in patients with non-metastatic hormone-sensitive prostate cancer (nmHSPC) receiving androgen deprivation therapy (ADT) treated by German urologists in private practice. MATERIAL AND METHODS: This is a questionnaire-based study including members of d-uo ("Deutsche Uro-Onkologen", German uro-oncologists). Patients with nmHSPC between July 2019 and June 2020 were included. They were asked about start, type and duration of osteoprotection as well as supplementation with calcium and vitamin D. RESULTS: Between July 2019 and June 2020, a total of 3,692 patients with prostate cancer were seen at least once in one of the private practices of 15 urologists (all d-uo members). There were 844 patients (22.9%) with nmHSPC treated with ADT. Osteoprotection using denosumab or a bisphosphonate to prevent skeletal-related events (SRE) was applied in 183/844 patients (21.7%) with nmHSPC. In patients receiving osteoprotection, denosumab was chosen in 73.2% of patients and a bisphosphonate was chosen in 26.8% of patients. Supplementation with calcium and vitamin D was given in 84.7% of patients. CONCLUSION: Patients with nmHSPC received osteoprotection in 1/5 of patients. Of these, 3/4 received denosumab and 1/4 received a bisphosphonate. The majority of patients were additionally treated with calcium and vitamin D. In our study, osteoprotection in patients with nmHSPC was rather an exception.


Assuntos
Antagonistas de Androgênios , Neoplasias da Próstata , Masculino , Humanos , Antagonistas de Androgênios/uso terapêutico , Neoplasias da Próstata/tratamento farmacológico , Neoplasias da Próstata/patologia , Androgênios , Denosumab/uso terapêutico , Cálcio , Alemanha , Vitamina D/uso terapêutico , Difosfonatos
2.
Aktuelle Urol ; 53(6): 526-534, 2022 12.
Artigo em Alemão | MEDLINE | ID: mdl-36423613

RESUMO

INTRODUCTION: Patients with bone metastasis due to prostate cancer often present allover reduced bone mineral density. Additionally, patients with bone metastatic castration-resistant prostate cancer (mCRPC) have a relevant risk for skeletal-related events (SRE). We herein present real-world data (RWD) regarding osteoprotection in mCRPC patients with bone metastasis treated by German urologists in private practice. MATERIAL AND METHODS: This is a questionnaire-based study including members of d-uo ("Deutsche Uro-Onkologen", German uro-oncologists). All patients with histologically confirmed prostate cancer seen at least once in the surveyed urology practice between July 2019 and June 2020 were included. Questions included start, type and duration of osteoprotection as well as supplementation with calcium and vitamin D. RESULTS: Between July 2019 and June 2020, a total of 3,692 patients with prostate cancer were seen at least once in 15 urology practices. There were 410 mCRPC patients (11.1%) with bone metastasis. Osteoprotection with denosumab or a bisphosphonate to prevent SRE was applied in 274/410 mCRPC patients (66.4%) with bone metastasis. In patients receiving osteoprotection, denosumab was chosen for 67.9% of patients and a bisphosphonate was chosen for 32.1%. Supplementation with calcium and vitamin D was performed in 93.4% of the patients. The median duration of treatment was 25.3 months for denosumab compared with 39.6 months for bisphosphonates. CONCLUSIONS: Patients with mCRPC with bone metastasis received osteoprotection in 2/3 of cases. Of these, 2/3 received denosumab and 1/3 received a bisphosphonate. The majority of patients were also treated with calcium and vitamin D. According to guideline recommendations regarding osteoprotection in mCRPC patients with bone metastasis, our RWD data showed some lack of guideline adherence.


Assuntos
Neoplasias Ósseas , Neoplasias de Próstata Resistentes à Castração , Masculino , Humanos , Neoplasias de Próstata Resistentes à Castração/tratamento farmacológico , Neoplasias de Próstata Resistentes à Castração/patologia , Denosumab/uso terapêutico , Cálcio/uso terapêutico , Neoplasias Ósseas/secundário , Difosfonatos/uso terapêutico , Alemanha , Vitamina D/uso terapêutico
3.
Mol Biol Evol ; 37(10): 2838-2856, 2020 10 01.
Artigo em Inglês | MEDLINE | ID: mdl-32421770

RESUMO

Ecological diversity in fungi is largely defined by metabolic traits, including the ability to produce secondary or "specialized" metabolites (SMs) that mediate interactions with other organisms. Fungal SM pathways are frequently encoded in biosynthetic gene clusters (BGCs), which facilitate the identification and characterization of metabolic pathways. Variation in BGC composition reflects the diversity of their SM products. Recent studies have documented surprising diversity of BGC repertoires among isolates of the same fungal species, yet little is known about how this population-level variation is inherited across macroevolutionary timescales. Here, we applied a novel linkage-based algorithm to reveal previously unexplored dimensions of diversity in BGC composition, distribution, and repertoire across 101 species of Dothideomycetes, which are considered the most phylogenetically diverse class of fungi and known to produce many SMs. We predicted both complementary and overlapping sets of clustered genes compared with existing methods and identified novel gene pairs that associate with known secondary metabolite genes. We found that variation among sets of BGCs in individual genomes is due to nonoverlapping BGC combinations and that several BGCs have biased ecological distributions, consistent with niche-specific selection. We observed that total BGC diversity scales linearly with increasing repertoire size, suggesting that secondary metabolites have little structural redundancy in individual fungi. We project that there is substantial unsampled BGC diversity across specific families of Dothideomycetes, which will provide a roadmap for future sampling efforts. Our approach and findings lend new insight into how BGC diversity is generated and maintained across an entire fungal taxonomic class.


Assuntos
Ascomicetos/metabolismo , Vias Biossintéticas/genética , Ascomicetos/genética , Redes Reguladoras de Genes , Melaninas/metabolismo , Anotação de Sequência Molecular , Família Multigênica , Naftóis/metabolismo
4.
Nat Commun ; 7: 12662, 2016 09 07.
Artigo em Inglês | MEDLINE | ID: mdl-27601008

RESUMO

The most frequently encountered symbiont on tree roots is the ascomycete Cenococcum geophilum, the only mycorrhizal species within the largest fungal class Dothideomycetes, a class known for devastating plant pathogens. Here we show that the symbiotic genomic idiosyncrasies of ectomycorrhizal basidiomycetes are also present in C. geophilum with symbiosis-induced, taxon-specific genes of unknown function and reduced numbers of plant cell wall-degrading enzymes. C. geophilum still holds a significant set of genes in categories known to be involved in pathogenesis and shows an increased genome size due to transposable elements proliferation. Transcript profiling revealed a striking upregulation of membrane transporters, including aquaporin water channels and sugar transporters, and mycorrhiza-induced small secreted proteins (MiSSPs) in ectomycorrhiza compared with free-living mycelium. The frequency with which this symbiont is found on tree roots and its possible role in water and nutrient transport in symbiosis calls for further studies on mechanisms of host and environmental adaptation.


Assuntos
Ascomicetos/genética , Ecossistema , Genoma Fúngico , Micorrizas/genética , Aquaporinas/metabolismo , Basidiomycota/genética , DNA Fúngico/genética , Proteínas Fúngicas , Regulação Fúngica da Expressão Gênica , Micorrizas/fisiologia , Filogenia , Pinus sylvestris/microbiologia , Raízes de Plantas/microbiologia , Transcriptoma , Água
5.
Mycologia ; 108(2): 457-68, 2016.
Artigo em Inglês | MEDLINE | ID: mdl-27127213

RESUMO

A Dacryopinax species that was cultured in Costa Rica and fruited in the laboratory provided DNA for the first sequenced genome for the Dacrymycetes. Here we characterize the isolate morphologically and cytologically and name it D. primogenitus Molecular sequences from the nuclear large subunit gene and internal transcribed spacer indicated that it is closely related to the South American D. indacocheae with which it agrees structurally. Both species form conidia on the basidiocarp, and D primogenitus also forms them on the mycelium. Unlike previous reports for the Dacrymycetales postmeiotic nuclear division results in uninucleate basidiospores and six residual nuclei in the basidium after basidiospore discharge. Ultrastructural analysis shows the characteristic septal-pore apparatus for the class and endogenous origin of the epibasidia/sterigmata, which may be a common occurrence in Dacrymycetes and the early diverging orders of its sister class, the Agaricomycetes.


Assuntos
Basidiomycota/citologia , Basidiomycota/fisiologia , Basidiomycota/classificação , Basidiomycota/genética , Genoma Fúngico , Filogenia
6.
Fungal Biol ; 117(7-8): 479-511, 2013.
Artigo em Inglês | MEDLINE | ID: mdl-23931115

RESUMO

The generic and sub-generic relationships in the Boletineae (Boletales) were studied using nuclear large subunit (nuc-lsu), translation elongation factor 1-alpha (tef1), and DNA directed RNA polymerase largest subunit (RPB1). The Boletineae, with the exclusion of Hydnomerulius pinastri, was strongly supported and the status of the families Boletaceae and Paxillaceae is discussed. Members of the genus Boletus are found throughout the phylogeny, with the majority not closely related to the type species, Boletus edulis. Many of the traditional, morphologically defined genera are not supported as monophyletic and additional sampling and taxonomic revisions are needed. The majority of the Boletineae are confirmed or putatively ectomycorrhizal (ECM), but two putatively mycoparasitic lineages (one lineage of Buchwaldoboletus lignicola and Chalciporus piperatus and the second Pseudoboletus parasiticus) are strongly supported.


Assuntos
Basidiomycota/classificação , Filogenia , Basidiomycota/genética , Basidiomycota/isolamento & purificação , DNA Fúngico/genética , DNA Ribossômico/genética , Proteínas Fúngicas/genética , Dados de Sequência Molecular , Fator 1 de Elongação de Peptídeos/genética
7.
Mycologia ; 105(6): 1350-73, 2013.
Artigo em Inglês | MEDLINE | ID: mdl-23935031

RESUMO

We present a phylogenetic and phylogenomic overview of the Polyporales. The newly sequenced genomes of Bjerkandera adusta, Ganoderma sp., and Phlebia brevispora are introduced and an overview of 10 currently available Polyporales genomes is provided. The new genomes are 39 500 000-49 900 00 bp and encode for 12 910-16 170 genes. We searched available genomes for single-copy genes and performed phylogenetic informativeness analyses to evaluate their potential for phylogenetic systematics of the Polyporales. Phylogenomic datasets (25, 71, 356 genes) were assembled for the 10 Polyporales species with genome data and compared with the most comprehensive dataset of Polyporales to date (six-gene dataset for 373 taxa, including taxa with missing data). Maximum likelihood and Bayesian phylogenetic analyses of genomic datasets yielded identical topologies, and the corresponding clades also were recovered in the 373-taxa dataset although with different support values in some datasets. Three previously recognized lineages of Polyporales, antrodia, core polyporoid and phlebioid clades, are supported in most datasets, while the status of the residual polyporoid clade remains uncertain and certain taxa (e.g. Gelatoporia, Grifola, Tyromyces) apparently do not belong to any of the major lineages of Polyporales. The most promising candidate single-copy genes are presented, and nodes in the Polyporales phylogeny critical for the suprageneric taxonomy of the order are identified and discussed.


Assuntos
Filogenia , Polyporales/classificação , Polyporales/genética , Evolução Molecular , Proteínas Fúngicas/genética , Genômica
8.
Mycologia ; 105(4): 888-95, 2013.
Artigo em Inglês | MEDLINE | ID: mdl-23709482

RESUMO

Solioccasus polychromus gen. & sp. nov., the most brightly colored hypogeous fungus known, is described from Papua New Guinea and tropical northern Australia south into subtropical forests along the Queensland coast and coastal mountains to near Brisbane. Phylogenetic analysis of molecular data places it as a sister genus to Bothia in the Boletineae, a clade of predominantly ectomycorrhizal boletes. Ectomycorrhizal trees, such as members of the Myrtaceae (Eucalyptus, Corymbia, Lophostemon, Melaleuca spp.) and Allocasuarina littoralis, were present usually in mixture or in some cases dominant, so we infer some or all of them to be among the ectomycorrhizal hosts of S. polychromus.


Assuntos
Basidiomycota/classificação , Micorrizas/classificação , Australásia , Myrtaceae/microbiologia , Papua Nova Guiné , Filogenia
9.
BMC Evol Biol ; 13: 40, 2013 Feb 13.
Artigo em Inglês | MEDLINE | ID: mdl-23405862

RESUMO

BACKGROUND: Increasing genome data show that introns, a hallmark of eukaryotes, already existed at a high density in the last common ancestor of extant eukaryotes. However, intron content is highly variable among species. The tempo of intron gains and losses has been irregular and several factors may explain why some genomes are intron-poor whereas other are intron-rich. RESULTS: We studied the dynamics of intron gains and losses in an α-amylase gene, whose product breaks down starch and other polysaccharides. It was transferred from an Actinobacterium to an ancestor of Agaricomycotina. This gene underwent further duplications in several species. The results indicate a high rate of intron insertions soon after the gene settled in the fungal genome. A number of these oldest introns, regularly scattered along the gene, remained conserved. Subsequent gains and losses were lineage dependent, with a majority of losses. Moreover, a few species exhibited a high number of both specific intron gains and losses in recent periods. There was little sequence conservation around insertion sites, then probably little information for splicing, whereas splicing sites, inside introns, showed typical and conserved patterns. There was little variation of intron size. CONCLUSIONS: Since most Basidiomycetes have intron-rich genomes and this richness was ancestral in Fungi, long before the transfer event, we suggest that the new gene was shaped to comply with requirements of the splicing machinery, such as short exon and intron sizes, in order to be correctly processed.


Assuntos
Basidiomycota/genética , Transferência Genética Horizontal , Genes Bacterianos , Íntrons , alfa-Amilases/genética , Teorema de Bayes , Sequência Consenso , DNA Fúngico/genética , Evolução Molecular , Genoma Fúngico , Splicing de RNA , Análise de Sequência de DNA
10.
Science ; 336(6089): 1715-9, 2012 Jun 29.
Artigo em Inglês | MEDLINE | ID: mdl-22745431

RESUMO

Wood is a major pool of organic carbon that is highly resistant to decay, owing largely to the presence of lignin. The only organisms capable of substantial lignin decay are white rot fungi in the Agaricomycetes, which also contains non-lignin-degrading brown rot and ectomycorrhizal species. Comparative analyses of 31 fungal genomes (12 generated for this study) suggest that lignin-degrading peroxidases expanded in the lineage leading to the ancestor of the Agaricomycetes, which is reconstructed as a white rot species, and then contracted in parallel lineages leading to brown rot and mycorrhizal species. Molecular clock analyses suggest that the origin of lignin degradation might have coincided with the sharp decrease in the rate of organic carbon burial around the end of the Carboniferous period.


Assuntos
Basidiomycota/enzimologia , Basidiomycota/genética , Evolução Molecular , Genoma Fúngico , Lignina/metabolismo , Peroxidases/genética , Basidiomycota/classificação , Teorema de Bayes , Indóis , Peroxidases/metabolismo , Madeira/metabolismo
11.
Mycologia ; 104(4): 951-61, 2012.
Artigo em Inglês | MEDLINE | ID: mdl-22495445

RESUMO

Sutorius is described as a new genus of Boletaceae to accommodate Boletus robustus originally named illegitimately by C.C. Frost from eastern North America. The legitimate name, Boletus eximius, provided by C.H. Peck, has been used since for a dark purple to chocolate brown bolete with finely scaly stipe and reddish brown spore deposit. This iconic taxon has been documented on five continents. Despite the straightforward species identification from morphology, the interpretation of stipe macro-morphology and spore color has led to equivocal generic placement. Phylogenetic analyses of genes encoding large subunit rRNA and translation elongation factor 1α confirm Sutorius as a unique generic lineage in the Boletaceae. Two species are recognized based on multiple accessions: S. eximius, represented by collections from North America, Costa Rica, Guyana, Indonesia and Japan (molecular data are lacking for only the Guyanan and Japanese material); and S. australiensis, represented by material from Queensland, Australia. Additional collections from Zambia and Thailand represent independent lineages, but sampling is insufficient to describe new species for these entities.


Assuntos
Basidiomycota/classificação , DNA Fúngico/genética , Basidiomycota/citologia , Basidiomycota/genética , Basidiomycota/metabolismo , Cor , Ecossistema , Genes de RNAr , Técnicas de Tipagem Micológica , Fator 1 de Elongação de Peptídeos/genética , Filogenia , Filogeografia , Pigmentos Biológicos/metabolismo , Subunidades Ribossômicas Maiores de Eucariotos/genética , Alinhamento de Sequência , Análise de Sequência de DNA , Especificidade da Espécie , Árvores/microbiologia
12.
New Phytol ; 194(4): 1079-1095, 2012 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-22471405

RESUMO

This study uses phylogenetic analysis of the Sclerodermatineae to reconstruct the evolution of ectomycorrhizal host associations in the group using divergence dating, ancestral range and ancestral state reconstructions. Supermatrix and supertree analysis were used to create the most inclusive phylogeny for the Sclerodermatineae. Divergence dates were estimated in BEAST. Lagrange was used to reconstruct ancestral ranges. BayesTraits was used to reconstruct ectomycorrhizal host associations using extant host associations with data derived from literature sources. The supermatrix data set was combined with internal transcribed spacer (ITS) data sets for Astraeus, Calostoma, and Pisolithus to produce a 168 operational taxonomic unit (OTU) supertree. The ensuing analysis estimated that basal Sclerodermatineae originated in the late Cretaceous while major genera diversified near the mid Cenozoic. Asia and North America are the most probable ancestral areas for all Sclerodermatineae, and angiosperms, primarily rosids, are the most probable ancestral hosts. Evolution in the Sclerodermatineae follows the biogeographic history of disjunct plant communities associated with early Cenozoic mesophytic forests and a boreotropical history. Broad geographic distributions are observed in the most promiscuous Sclerodermatineae (those with broad host ranges), while those with relatively limited distribution have fewer documented ectomycorrhizal associations. This suggests that ectomycorrhizal generalists have greater dispersal capabilities than specialists.


Assuntos
Basidiomycota/fisiologia , Biodiversidade , Micorrizas/fisiologia , Filogenia , Simbiose , DNA Intergênico , Geografia
13.
Fungal Genet Biol ; 49(3): 217-26, 2012 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-22326418

RESUMO

Wallemia (Wallemiales, Wallemiomycetes) is a genus of xerophilic Fungi of uncertain phylogenetic position within Basidiomycota. Most commonly found as food contaminants, species of Wallemia have also been isolated from hypersaline environments. The ability to tolerate environments with reduced water activity is rare in Basidiomycota. We sequenced the genome of W. sebi in order to understand its adaptations for surviving in osmotically challenging environments, and we performed phylogenomic and ultrastructural analyses to address its systematic placement and reproductive biology. W. sebi has a compact genome (9.8 Mb), with few repeats and the largest fraction of genes with functional domains compared with other Basidiomycota. We applied several approaches to searching for osmotic stress-related proteins. In silico analyses identified 93 putative osmotic stress proteins; homology searches showed the HOG (High Osmolarity Glycerol) pathway to be mostly conserved. Despite the seemingly reduced genome, several gene family expansions and a high number of transporters (549) were found that also provide clues to the ability of W. sebi to colonize harsh environments. Phylogenetic analyses of a 71-protein dataset support the position of Wallemia as the earliest diverging lineage of Agaricomycotina, which is confirmed by septal pore ultrastructure that shows the septal pore apparatus as a variant of the Tremella-type. Mating type gene homologs were identified although we found no evidence of meiosis during conidiogenesis, suggesting there may be aspects of the life cycle of W. sebi that remain cryptic.


Assuntos
Basidiomycota/fisiologia , Genoma Fúngico , Adaptação Fisiológica , Basidiomycota/classificação , Basidiomycota/genética , Basidiomycota/crescimento & desenvolvimento , Proteínas Fúngicas/química , Proteínas Fúngicas/genética , Proteínas Fúngicas/metabolismo , Dados de Sequência Molecular , Osmose , Filogenia , Estrutura Terciária de Proteína , Reprodução , Água/metabolismo
14.
BMC Evol Biol ; 11: 230, 2011 Aug 04.
Artigo em Inglês | MEDLINE | ID: mdl-21816066

RESUMO

BACKGROUND: The fungal genus Serpula (Serpulaceae, Boletales) comprises several saprotrophic (brown rot) taxa, including the aggressive house-infecting dry rot fungus Serpula lacrymans. Recent phylogenetic analyses have indicated that the ectomycorrhiza forming genera Austropaxillus and Gymnopaxillus cluster within Serpula. In this study we use DNA sequence data to investigate phylogenetic relationships, historical biogeography of, and nutritional mode transitions in Serpulaceae. RESULTS: Our results corroborate that the two ectomycorrhiza-forming genera, Austropaxillus and Gymnopaxillus, form a monophyletic group nested within the saprotrophic genus Serpula, and that the Serpula species S. lacrymans and S. himantioides constitute the sister group to the Austropaxillus-Gymnopaxillus clade. We found that both vicariance (Beringian) and long distance dispersal events are needed to explain the phylogeny and current distributions of taxa within Serpulaceae. Our results also show that the transition from brown rot to mycorrhiza has happened only once in a monophyletic Serpulaceae, probably between 50 and 22 million years before present. CONCLUSIONS: This study supports the growing understanding that the same geographical barriers that limit plant- and animal dispersal also limit the spread of fungi, as a combination of vicariance and long distance dispersal events are needed to explain the present patterns of distribution in Serpulaceae. Our results verify the transition from brown rot to ECM within Serpulaceae between 50 and 22 MyBP.


Assuntos
Basidiomycota/classificação , Basidiomycota/genética , Evolução Molecular , Filogenia , Sequência de Aminoácidos , Sequência de Bases , Basidiomycota/química , Basidiomycota/fisiologia , Proteínas Fúngicas/química , Proteínas Fúngicas/genética , Dados de Sequência Molecular , Alinhamento de Sequência
15.
Science ; 333(6043): 762-5, 2011 Aug 05.
Artigo em Inglês | MEDLINE | ID: mdl-21764756

RESUMO

Brown rot decay removes cellulose and hemicellulose from wood--residual lignin contributing up to 30% of forest soil carbon--and is derived from an ancestral white rot saprotrophy in which both lignin and cellulose are decomposed. Comparative and functional genomics of the "dry rot" fungus Serpula lacrymans, derived from forest ancestors, demonstrated that the evolution of both ectomycorrhizal biotrophy and brown rot saprotrophy were accompanied by reductions and losses in specific protein families, suggesting adaptation to an intercellular interaction with plant tissue. Transcriptome and proteome analysis also identified differences in wood decomposition in S. lacrymans relative to the brown rot Postia placenta. Furthermore, fungal nutritional mode diversification suggests that the boreal forest biome originated via genetic coevolution of above- and below-ground biota.


Assuntos
Basidiomycota/genética , Biodiversidade , Parede Celular/metabolismo , Micorrizas/genética , Árvores/microbiologia , Madeira/microbiologia , Basidiomycota/classificação , Basidiomycota/enzimologia , Basidiomycota/fisiologia , Evolução Biológica , Biota , Coriolaceae/enzimologia , Coriolaceae/genética , Coriolaceae/fisiologia , Perfilação da Expressão Gênica , Genes Fúngicos , Genômica , Lignina/metabolismo , Magnoliopsida/microbiologia , Micorrizas/enzimologia , Micorrizas/fisiologia , Oxirredutases/genética , Oxirredutases/metabolismo , Peroxidases/genética , Peroxidases/metabolismo , Filogenia , Proteoma , Simbiose , Traqueófitas/microbiologia , Madeira/metabolismo
16.
Evolution ; 65(5): 1305-22, 2011 May.
Artigo em Inglês | MEDLINE | ID: mdl-21166793

RESUMO

Gasteroid fungi include puffballs, stinkhorns, and other forms that produce their spores inside the fruiting body. Gasteroid taxa comprise about 8.4% of the Agaricomycetes (mushroom-forming fungi) and have evolved numerous times from nongasteroid ancestors, such as gilled mushrooms, polypores, and coral fungi, which produce spores on the surface of the fruiting body. Nongasteroid Agaricomycetes have a complex mechanism of forcible spore discharge that is lost in gasteroid lineages, making reversals to nongasteroid forms very unlikely. Our objective was to determine whether gasteromycetation affects the rate of diversification of lineages "trapped" in the gasteroid state. We assembled four datasets (the Sclerodermatineae, Boletales, Phallomycetidae, and Lycoperdaceae), representing unique origins of gasteroid fungi from nongasteroid ancestors and generated phylogenies using BEAST. Using the program Diversitree, we analyzed these phylogenies to estimate character-state-specific rates of speciation and extinction, and rates of transitions between nongasteroid and gasteroid forms. Most optimal models suggest that the net diversification rate of gasteroid forms exceeds that of nongasteroid forms, and that gasteroid forms will eventually come to predominate over nongasteroid forms in the clades in which they have arisen. The low frequency of gasteroid forms in the Agaricomycetes as a whole may reflect the recent origins of many gasteroid lineages.


Assuntos
Basidiomycota/crescimento & desenvolvimento , Basidiomycota/genética , Evolução Biológica , Especiação Genética , Sequência de Bases , Basidiomycota/classificação , DNA Fúngico/análise , Extinção Biológica , Dados de Sequência Molecular , Filogenia , Alinhamento de Sequência , Análise de Sequência de DNA
17.
Mycologia ; 103(3): 510-24, 2011.
Artigo em Inglês | MEDLINE | ID: mdl-21186327

RESUMO

The Gloeophyllales is a recently described order of Agaricomycotina containing a morphologically diverse array of polypores (Gloeophyllum), agarics (Neolentinus, Heliocybe) and resupinate fungi (Veluti-Veluticeps, Boreostereum, Chaetodermella), most of which have been demonstrated to produce a brown-rot mode of wood decay and are found preferentially on coniferous substrates. Multiple phylogenetic studies have included taxa of Gloeophyllales, but none have sampled the order thoroughly, and so far only ribosomal RNA genes have been used. Consequently the limits and higher level placement of the Gloeophyllales are obscure. We obtained sequence data for three protein-coding genes (rpb2, atp6, tef1) and three rRNA regions (nuc-ssu, nuc-lsu, 5.8S) in 19 species of Gloeophyllales representing seven genera and analyzed them together with a diverse set of Agaricomycotina, emphasizing Polyporales. Boreostereum, which is suspected to produce a white rot, is the sister group of the rest of the Gloeophyllales, all of which produce a brown rot. Gloeophyllum contains at least two independent clades, one of which might correspond to the genus Osmoporus. White rot and resupinate fruiting bodies appear to be plesiomorphic in Gloeophyllales. Relaxed molecular clock analyses suggest that the Gloeophyllales arose in the Cretaceous, after the origin of Pinaceae.


Assuntos
Basidiomycota/classificação , Basidiomycota/genética , Evolução Molecular , Proteínas Fúngicas/genética , Filogenia , Sequência de Bases , Basidiomycota/citologia , DNA Fúngico/química , DNA Fúngico/genética , DNA Ribossômico/química , DNA Ribossômico/genética , Genes de RNAr , Técnicas de Tipagem Micológica , Análise de Sequência de DNA , Traqueófitas/microbiologia , Madeira/química , Madeira/metabolismo , Madeira/microbiologia
18.
Mycologia ; 102(4): 865-80, 2010.
Artigo em Inglês | MEDLINE | ID: mdl-20648753

RESUMO

The Agaricomycetidae is one of the most morphologically diverse clades of Basidiomycota that includes the well known Agaricales and Boletales, which are dominated by pileate-stipitate forms, and the more obscure Atheliales, which is a relatively small group of resupinate taxa. This study focused taxon sampling on resupinate forms that may be related to these groups, aimed at resolving the early branching clades in the major groups of Agaricomycetidae. A specific goal was to resolve with confidence sister group relationships among Agaricales, Boletales and Atheliales, a difficult task based on conflicting results concerning the placement of the Atheliales. To this end we developed a six-locus nuclear dataset (nuc-ssu, nuc-lsu, 5.8S, rpb1, rpb2 and tef1) for 191 species, which was analyzed with maximum parsimony, maximum likelihood and Bayesian methods. Our analyses of these data corroborated the view that the Boletales are closely related to athelioid forms. We also identified an additional early branching clade within the Agaricomycetidae that is composed primarily of resupinate forms, as well as a few morphologically more elaborate forms including Plicaturopsis and Podoserpula. This clade, which we describe here as the new order Amylocorticiales, is the sister group of the Agaricales. We introduce a second order, the Jaapiales, for the lone resupinate genus Jaapia consisting of two species only. The Jaapiales is supported as the sister group of the remainder of the Agaricomycetidae, suggesting that the greatest radiation of pileate-stipitate mushrooms resulted from the elaboration of resupinate ancestors.


Assuntos
Basidiomycota/classificação , Basidiomycota/citologia , Basidiomycota/genética , Filogenia
19.
BMC Evol Biol ; 10: 198, 2010 Jun 25.
Artigo em Inglês | MEDLINE | ID: mdl-20579371

RESUMO

BACKGROUND: Glutamine synthetase (GS) is essential for ammonium assimilation and the biosynthesis of glutamine. The three GS gene families (GSI, GSII, and GSIII) are represented in both prokaryotic and eukaryotic organisms. In this study, we examined the evolutionary relationship of GSII from eubacterial and eukaryotic lineages and present robust phylogenetic evidence that GSII was transferred from gamma-Proteobacteria (Eubacteria) to the Chloroplastida. RESULTS: GSII sequences were isolated from four species of green algae (Trebouxiophyceae), and additional green algal (Chlorophyceae and Prasinophytae) and streptophyte (Charales, Desmidiales, Bryophyta, Marchantiophyta, Lycopodiophyta and Tracheophyta) sequences were obtained from public databases. In Bayesian and maximum likelihood analyses, eubacterial (GSIIB) and eukaryotic (GSIIE) GSII sequences formed distinct clades. Both GSIIB and GSIIE were found in chlorophytes and early-diverging streptophytes. The GSIIB enzymes from these groups formed a well-supported sister clade with the gamma-Proteobacteria, providing evidence that GSIIB in the Chloroplastida arose by horizontal gene transfer (HGT). Bayesian relaxed molecular clock analyses suggest that GSIIB and GSIIE coexisted for an extended period of time but it is unclear whether the proposed HGT happened prior to or after the divergence of the primary endosymbiotic lineages (the Archaeplastida). However, GSIIB genes have not been identified in glaucophytes or red algae, favoring the hypothesis that GSIIB was gained after the divergence of the primary endosymbiotic lineages. Duplicate copies of the GSIIB gene were present in Chlamydomonas reinhardtii, Volvox carteri f. nagariensis, and Physcomitrella patens. Both GSIIB proteins in C. reinhardtii and V. carteri f. nagariensis had N-terminal transit sequences, indicating they are targeted to the chloroplast or mitochondrion. In contrast, GSIIB proteins of P. patens lacked transit sequences, suggesting a cytosolic function. GSIIB sequences were absent in vascular plants where the duplication of GSIIE replaced the function of GSIIB. CONCLUSIONS: Phylogenetic evidence suggests GSIIB in Chloroplastida evolved by HGT, possibly after the divergence of the primary endosymbiotic lineages. Thus while multiple GS isoenzymes are common among members of the Chloroplastida, the isoenzymes may have evolved via different evolutionary processes. The acquisition of essential enzymes by HGT may provide rapid changes in biochemical capacity and therefore be favored by natural selection.


Assuntos
Evolução Molecular , Transferência Genética Horizontal , Glutamato-Amônia Ligase/genética , Filogenia , Teorema de Bayes , Clorófitas/enzimologia , Clorófitas/genética , DNA de Algas/genética , Gammaproteobacteria/enzimologia , Gammaproteobacteria/genética , Funções Verossimilhança , Família Multigênica , Análise de Sequência de DNA , Simbiose
20.
Mycologia ; 100(6): 956-61, 2008.
Artigo em Inglês | MEDLINE | ID: mdl-19202849

RESUMO

Hydnangium echinulatum, described originally from a single specimen collected in Malaysia, has been recollected, and based on morphological and molecular characters is recognized as representing a new gasteroid genus of boletes with affinities to the Boletineae, herein named Durianella. Diagnostic features include an epigeous, ovoid, pyramidal-warted, durian fruit-like basidiome with gelatinized glebal locules and a columella that turns indigo blue upon exposure, and subglobose basidiospores with long, curved, thin-walled and collapsible spines. A redescription, phylogenetic analysis and comparison with allied taxa are presented.


Assuntos
Agaricales/classificação , Agaricales/ultraestrutura , Agaricales/genética , DNA Fúngico/genética , DNA Ribossômico/genética , Malásia , Microscopia Eletrônica de Varredura , Dados de Sequência Molecular , Filogenia
SELEÇÃO DE REFERÊNCIAS
DETALHE DA PESQUISA
...