Molecular pathology via IR and Raman spectral imaging.

During the last 15 years, vibrational spectroscopic methods have been developed that can be viewed as molecular pathology methods that depend on sampling the entire genome, proteome and metabolome of cells and tissues, rather than probing for the presence of selected markers. First, this review introduces the background and fundamentals of the spectroscopies underlying the new methodologies, namely infrared and Raman spectroscopy. Then, results are presented in the context of spectral histopathology of tissues for detection of metastases in lymph nodes, squamous cell carcinoma, adenocarcinomas, brain tumors and brain metastases. Results from spectral cytopathology of cells are discussed for screening of oral and cervical mucosa, and circulating tumor cells. It is concluded that infrared and Raman spectroscopy can complement histopathology and reveal information that is available in classical methods only by costly and time-consuming steps such as immunohistochemistry, polymerase chain reaction or gene arrays. Due to the inherent sensitivity toward changes in the bio-molecular composition of different cell and tissue types, vibrational spectroscopy can even provide information that is in some cases superior to that of any one of the conventional techniques.

Vibrational analysis of isopropyl nitrate and isobutyl nitrate.

Raman and infrared spectra of isopropyl nitrate and isobutyl nitrate are reported. These spectra are used in combination with computational studies employing density functional theory at the B3-LYP/6-31G* level to assign the vibrational transitions to their corresponding normal coordinates. Similar to other alkyl nitrates, the frequency of the NO2 symmetric stretch remains relatively unchanged while the asymmetric stretch shifts to lower frequency with increasing alpha-carbon substitution. The mode assignments involving the photochemically relevant -ONO2 chromophore agree well with those from previous infrared work. Raman depolarization ratios are also presented, and provide evidence that the condensed phase, ground-state molecular structure of isobutyl nitrate is of Cs symmetry. In contrast, the minimum energy structure of isopropyl nitrate is predicted to contain a pronounced twist around the C-O bond relative to the Cs-symmetry structure that lies 2.6 kcal/mol higher in energy. Infrared intensities of isopropyl nitrate are consistent with the twisted geometry, demonstrating that this conformer is favored in solution.