Unsupervised topological analysis of polarized light microscopy: application to quantitative birefringence imaging.

The determination of birefringence (magnitude and axis orientation) of optical materials is of significant interest in various fields. In the case of composite samples, this task becomes complicated and time-consuming; therefore, a partially automated procedure for reconstructing birefringence spatial distribution becomes valuable. Herein, we propose a procedure to reconstruct the spatial distributions of the retardance and optical axis orientation in a geological thin section from sparse quantitative birefringence measurements, using automatic boundary detection on cross-polarized light microscopy images. We examine two particular areas on the selected geological thin section: one that presents a uniaxial crystal with a circular cross-section of its refractive index ellipsoid and the other with grains of varying orientations. The measurement gives the orientation of the grain's optical axis both in and out of the plane of the thin section, which explains the qualitative observations with the cross-polarized light microscope. Future work will connect the measured orientation of the rock thin section with its 3D geological orientation in the field.

Analysis of accuracy and ambiguities in spatial measurements of birefringence in uniaxial anisotropic media.

Accuracy and ambiguities in retardance and optical axis orientation spatial measurements are analyzed in detail in the context of the birefringence imaging method introduced by Shribak and Oldenbourg [Appl. Opt.42, 3009 (2003)APOPAI0003-693510.1364/AO.42.003009]. An alternative formula was derived in order to determine the optical axis orientation more accurately, and without indetermination in the case of a quarter-wave plate sample. Following Shribak and Oldenbourg's experimental configuration using two variable retarders, a linear polarizer, and five polarization probes, we examined the effect of the swing angle χ, which selected the ellipticity of each polarization state, on the accuracy of retardance (Δ) and axis orientation (ϕ) measurements. Using a quarter-wave plate, excellent agreement between measured and expected values was obtained for both the retardance and the axis orientation, as demonstrated by the statistical analysis of Δ and ϕ spatial distributions. The intrinsic ambiguity in the determination of Δ and ϕ for superimposed layers of transparent anisotropic cello-tape is discussed in detail, and solutions are provided to remove this ambiguity. An example of application of the method on geological samples is also presented. We believe our analysis will guide researchers willing to exploit this long-standing method in their laboratories.

Analysis of accuracy and ambiguities in spatial measurements of birefringence in uniaxial anisotropic media: publisher's note.

This publisher's note corrects an error in Appl. Opt.61, 8081 (2022)APOPAI0003-693510.1364/AO.463657.

A biocodicological analysis of the medieval library and archive from Orval Abbey, Belgium.

Biocodicological analysis of parchments from manuscript books and archives offers unprecedented insight into the materiality of medieval literacy. Using ZooMS for animal species identification, we explored almost the entire library and all the preserved single leaf charters of a single medieval Cistercian monastery (Orval Abbey, Belgium). Systematic non-invasive sampling of parchment collagen was performed on every charter and on the first bifolium from every quire of the 118 codicological units composing the books (1490 samples in total). Within the genuine production of the Orval scriptorium (26 units), a balanced use of calfskin (47.1%) and sheepskin (48.5%) was observed, whereas calfskin was less frequent (24.3%) in externally produced units acquired by the monastery (92 units). Calfskin was preferably used for higher quality manuscripts while sheepskin tends to be the standard choice for 'ordinary' manuscript book production. This finding is consistent with thirteenth-century parchment accounts from Beaulieu Abbey (England) where calfskin supply was more limited and its price higher. Our study reveals that the making of archival documents does not follow the same pattern as the production of library books. Although the five earliest preserved charters are made of calfskin, from the 1230s onwards, all charters from Orval are written on sheepskin.

Animal species identification in parchments by light.

Recently, historical and conservation studies have attached an increasing importance to investigating the materials used in historic documents. In particular, the identification of the animal species from which parchments are made is of high importance and is currently performed by either genetic or proteomic methods. Here, we introduce an innovative, non-invasive optical method for identifying animal species based on light-parchment interaction. The method relies on conservation of light energy through reflection, transmission and absorption from the sample, as well as on statistical processing of the collected optical data. Measurements are performed from ultraviolet (UV) to near-infrared (NIR) spectral ranges by a standard spectrophotometer and data are processed by Principal Component Analysis (PCA). PCA data from modern parchments, made of sheep, calf and goat skins, are used as a database for PCA analysis of historical parchments. Using only the first two principal components (PCs), the method confirmed visual diagnostics about parchment appearance and aging, and was able to recognise the origin species of historical parchment of among database clusters. Furthermore, taking into account the whole set of PCs, species identification was achieved, with all results matching perfectly their proteomic counterparts used for method assessment. The validated method compares favourably with genetic and proteomic methods used for the same purpose. In addition to animals' proteomic and genetic signatures, a unique "optical fingerprint" of the parchments' origin species is revealed here. This new method is non-invasive, straightforward to implement, potentially cheap and accessible to scholars and conservators, with minimal training. In the context of cultural heritage, the method could help solving questions related to parchment production and, more generally, medieval writing production.