Free electron transfer--relations between molecule dynamics and reaction kinetics.

Electron transfer in non-polar media (alkanes, alkyl chlorides) exhibits some essential peculiarities. For instance the reaction of hetero-substituted aromatics with parent solvent radical cations results in the parallel formation of metastable donor radical cations and fragmentation products, in comparable amounts. The fragmentation products originate from a dissociative donor radical cation which decays extremely rapidly, i.e., in a few femtoseconds. This phenomenon is explained in terms of intramolecular dynamic motions which cause changes of the electron density (pi- and n-orbitals) in dependence on the deformation angle between the substituents and the aromatic ring. Hence femtosecond dynamics is reflected in the nanosecond time range and can be observed with real-time spectroscopy. Therefore, the process is named free electron transfer (FET) which corresponds to an unhindered electron jump occurring in the first approach of the reactants. This dynamic controlled process is compared with the classical electron transfer theories which are based on equilibrium kinetics. From the FET mechanism some new aspects for chemical reaction kinetics can be derived (critical review, 69 references).

Free electron transfer with bifunctional donors: p-aminotritylsilanes.

This work provides an in-depth look at the bimolecular free-electron transfer (FET) from bisubstituted (amine and -CR(2)SiMe(3) groups) aromatic molecules to the solvent radical cations of n-BuCl. Because of the low rotational barriers, the substrates obtain all possible arrangements in solution. The electron jump is an unhindered process that does not require a defined encounter complex. The resulting radical cations show great conformer diversity because they directly inherit the geometry of their mobile precursors. One part of the radical cations is unstable and dissociates instantly, but the other one is metastable (microsecond lifetime). The two substituents reduce the barrier of internal rotation, resulting in stabilization of the otherwise good leaving group -SiMe(3). The amine group governs the reactivity of the system because it receives most of the electron density of the fluctuating highest MOs: primary and secondary amine groups lead to both instant and delayed formation of aminyl radicals; tertiary amines cause the rapid loss of an alpha-H(+) to yield alpha-aminoalkyl radicals.

Ionization of amino-, thio- and hydroxy-naphtalenes via free (unhindered) electron transfer.

The electron transfer from various monosubstituted naphthyl derivatives (naphtols, NpOH; naphtylamines, NpNH2; and thionaphtols, NpSH) to parent n-BuCl radical cations was studied by means of pulse radiolysis. The experiments reveal the synchronous and direct formation of two types of transients: the metastable solute radical cation (NpXH(*+), X = heteroatom) and the corresponding heteroatom-containing radical (NpX(*)) in comparable amounts. This is explained in terms of the free (unhindered) electron transfer in nonpolar solvents, which is a bimolecular process reflecting femtosecond time scale events of intramolecular dynamic motions accompanied by significant changes of the electron distribution within the donor molecule.

Kinetic and energetic analysis of the free electron transfer.

In this paper, the bimolecular free (unhindered) electron transfer (FET) from various trityl-containing compounds to the solvent radical cations of n-BuCl is described. In good agreement with the previously studied cases, the FET involving trityl-derived compounds results in the formation of two different types of the radical cation, which undergo the subsequent fragmentation via two alternative reaction channels. This unusual effect is caused by the intramolecular rotational motion in the ground-state molecules around the arrow-marked bond Ar-//-X-CPh 3 (Ar = aromatic moiety; X = S, O, NH, CH 2), since such oscillations are directly connected with the electron distribution within the molecule. An unhindered electron jump from the donor trityl compound to the solvent radical cation, taking place in the subfemtosecond time range, generates the solute radical cation with the inherited geometry and the electron distribution of its precursor. Among the whole variety of produced radical cations, two extreme conformer states can be distinguished, namely, a planar and a twisted state. The planar type represents the structures with minimum energy, whereas the twisted type is destabilized by the increased value of the rotational barrier in the ionized state. The difference in the energetic profiles between planar and twisted radical cations plays a crucial role in their subsequent fragmentation. The planar radical cation follows the thermodynamically favored pathway generating ArX (*) and Ph 3C (+). A distinct part of the twisted radical cation dissociates faster than it relaxes into the more preferable planar conformation and, therefore, produces a thermodynamically unfavorable couple of products: ArX (+) and Ph 3C (*). This fragmentation channel is exclusively caused by FET. The undertaken quantum chemical calculations enable the judgment of the energetics of the different dissociation channels of the radical cations of the trityl derivatives.

Ionization of aromatic sulfides in nonpolar media: free vs reaction-controlled electron transfer.

The primary products of the bimolecular free electron transfer (FET) from aromatic sulfides (PhSCH2Ph, PhSCHPh2, PhSCPh3) to n-butyl chloride radical cations are two radical cation conformers: a dissociative and a metastable one. In analogy with formerly studied donor systems, this result seems to reflect femtosecond oscillations in the ground state of the sulfides such as torsion motions around the Ar-S bond. This motion is accompanied by a marked electron fluctuation within the HOMO (or the n) orbitals. The FET products observed in the nanosecond time scale such as the metastable sulfide radical cations (Ar-S-CR3*+), the dissociation products R3C+; and R3C*, and their (experimentally) nondetectable counterparts Ar-S* as well as Ar-S+ can be understood with the simplified assumption of two extreme conformations, namely a planar and a twisted donor molecule. Using mediator radical cations (benzene, butylbenzene, biphenyl), the stepwise reduction of the free energy of the electron transfer from -DeltaH = 2.5 to

Femtodynamics reflected in nanoseconds: bimolecular free electron transfer in nonpolar media.

The (free) electron transfer (FET) from electron donor molecules to parent solvent radical cations of alkanes and alkyl chlorides exhibits mechanistic peculiarities that are conditioned by the low polarity of these solvents. Because of the negligible solvation of ions in such systems and the almost complete lack of an activation barrier, the electron jump takes place at the very first encounter of the reactants and, as such, in extremely short times of

Repair reactions of pyrimidine-derived radicals by aliphatic thiols.

Pyrimidinyl radicals of various structures (Pyr*) were generated in aqueous and alcohol-containing solutions by means of pulse radiolysis to determine the rate constants of their repair reactions by different thiols (RSH = cysteamine, 2-mercaptoethanol, cysteine, and penicillamine): Pyr* + RSH --> PyrH + RS*. C5-OH and C6-OH adduct radicals of the pyrimidines react with thiols with k9 = (1.2-10.0) x 10(6) dm3 mol(-1) s(-1). Similar repair rate constants were found for uracil- and thymine-derived N1-centered radicals, k31 = (1.5-6.1) x 10(6) dm3 mol(-1) s(-1). However, pyrimidine radical anions protonated at their C6 position and C6-uracilyl radicals, with carbonyl groups at their C5 position, react with thiols faster, with k24 = (0.5-7.6) x 10(7) dm3 mol(-1) s(-1) and k14 = (1.4-4.8) x 10(7) dm3 mol(-1) s(-1), respectively. Quantum chemical calculations, at the B3LYP/6-31G(d,p) and self-consistent reaction field polarizable continuum model level point to the combined effects of the energy gap between interacting molecular orbitals, charge distribution within different pyrimidine-derived radicals, and the coefficients of the atomic orbitals as the possible reasons for the differences in the rate constants of repair.

Deactivation of the first excited singlet state of thiophenols.

On the bases of picosecond and nanosecond laser flash photolysis with detection by emission and absorption spectroscopy, a quantitative description is given of all deactivation channels of the first excited singlet state of thiophenols ArSH(S(1)) such as fluorescence, intersystem crossing (ISC), chemical dissociation into radicals, and radiation-less internal conversion (IC). For this purpose, the photolysis of thiophenol and its methyl-, methoxy-, and chloro-substituted derivatives was studied in solvents of increasing polarity: 1-chlorobutane, ethanol, and acetonitrile. The fluorescence lifetime of the thiophenols was found to range from some hundreds of picoseconds up to a few nanoseconds, correlating with fluorescence quantum yields between 0.001-0.040, at room temperature. Depending on the substitution pattern of the aromatic ring, the quantum yield of the S-H bond dissociation was found to be between 0.3-0.5, irrespective of the solvent polarity. In laser photolysis, no triplet formation of the investigated compounds could be observed neither by the direct way nor by subsequent sensitization with beta-carotene. As a difference to the total, the radiation-less internal conversion (Phi(IC)>or= 0.5) was found to be the dominating process.

Free electron transfer from xanthenyl- and fluorenylsilanes (Me3 or Ph3) to parent solvent radical cations: effects of molecule dynamics.

Parent radical cations of nonpolar solvents (alkanes and alkyl chlorides) ionize 9-(trimethylsilyl)xanthenes and 9-(trimethylsilyl)fluorenes in a diffusion-controlled electron transfer. The actual electron jump as the deciding part of the process does not require a defined encounter complex, and therefore the reactants are not subjected to any geometry optimization. Considering the molecule dynamics of the donors, bending motions of the silyl group are concerted with fluctuations of the highest occupied molecular orbital electrons. Ionizing such a standing conformer mixture creates metastable (microsecond) as well as dissociative donor radical cations. A mobility restriction of the benzylic silane group in positions vertical to the phenyl plane stabilizes the radical cations and accounts for a declining amount of dissociative radical cations, which undergo C-Si bond fragmentation in the order benzylsilane > xanthenylsilane > fluorenylsilane.

Trans lipid formation induced by thiols in human monocytic leukemia cells.

Trans lipids in humans originate exogenously from the ingestion of isomerized fats. An endogenous path comprising a thiyl radical-catalyzed cis-trans isomerization of cis-unsaturated phospholipids was proposed. However, whether an isomerization process might be feasible in eukaryotic cells remained to be established. Here we report the presence of trans lipids in human monocytic leukemia cell membranes (THP-1) before and after treatment with a 10 mM series of thiols. Oleic, linoleic, and arachidonic acid residues of membrane phospholipids were analyzed and, unexpectedly, an initial trans lipid content was found in control cells. Then, incubation for 24 h with thiols under physiological conditions slightly increased trans lipid content. Formation of trans isomers was also evaluated in the presence of thiol and under free radical stress induced by gamma-irradiation or by thermal decomposition of azo-compounds. The similarity of isomer trends formed under incubation and stress conditions, together with the reactivity order of fatty acid residues (arachidonic > linoleic approximately oleic), indicated a common radical path and some mechanistic considerations are advanced. These results offer the first evidence that trans lipids are formed in eukaryotic cells and confirm that thiyl radicals are harmful to the integrity of cis lipid geometry. This work motivates further studies into the relationship between lipid isomerization outcome and thiyl radicals in cellular systems, as well as the formation of trans lipids and the metabolic response to such a perturbation introduced into biological membranes.

Thiyl radical interaction with pyrimidine C5-C6 double bond.

Addition and elimination interaction of thiyl radicals with the C5-C6 double bond in pyrimidines was studied by the pulse radiolysis technique in aqueous solution with the use of different monitoring systems. For this purpose, p-thiocresol, cysteamine hydrochloride, and mercaptoethanol were used. The rate constants of addition and elimination of thiyl radicals were determined by applying the modified version of ACUCHEM (computer program for modeling complex reaction systems). Aliphatic thiyl radicals add to the pyrimidine C5-C6 double bond with k = 1.0-3.0 x 10(7) dm3 mol(-1) s(-1), whereas elimination takes place with k = 0.7-2.0 x 10(5) s(-1). Quantum chemical calculations at the B3LYP/6-31G(d)/PCM level show that the addition should occur at the C6 position of the pyrimidine ring and that the energy of interaction between thiyl radicals and the pyrimidine double bond C5-C6 is low.

Ionization of aniline and its N-methyl and N-phenyl substituted derivatives by (free) electron transfer to n-butyl chloride parent radical cations.

The electron transfer from aniline and its N-methyl as well as N-phenyl substituted derivatives (N-methylaniline, N,N-dimethylaniline, diphenylamine, triphenylamine) to parent solvent radical cations was studied by electron pulse radiolysis in n-butyl chloride solution. The ionization results in the case of aniline (ArNH2) and the secondary aromatic amines (Ar2NH, Ar(Me)NH) in the synchronous and direct formation of amine radical cations, as well as aminyl radicals, in comparable amounts. Subsequently, ArNH2*+ deprotonates in a delayed reaction with the present nucleophile Cl-, and forms further ArNH*. In contrast, tertiary aromatic amines such as triphenylamine and dimethylaniline yield primarily the corresponding amine radical cations Ar3N*+ or Ar(Me2)N*+, only. The persistent Ar3N*+ forms a charge transfer complex (dimer) with the parent amine molecule, whereas Ar(Me2)N*+ deprotonates to carbon-centered radicals Ar(Me)NCH2*.

Quantitative description of the deactivation channels of the first excited singlet state of 2- and 4-thiosalicylic acids.

On the bases of picosecond and nanosecond laser flash photolysis with detection by emission and absorption spectroscopy, a quantitative description is given of all of the deactivation channels of the first excited singlet state of 2- and 4-thiosalicyclic acids (TS) such as fluorescence, intersystem crossing (ISC), chemical dissociation into radicals, and radiationless internal conversion (IC). For this purpose, the investigated compounds were studied in solvents of increasing polarity: 1-chlorobutane, acetonitrile, ethanol, and water. As an exception for thiols, and in contrast to recent findings on thiophenol and its methyl- and methoxy-substituted derivatives, the photoinduced first excited triplet state of the thiosalicyclic acids was directly observed by its T1-T(n) absorption spectra and characterized by sensitization experiments. According to the direct determination of the quantum yields of all deactivation channels of the first excited singlet state of 2- and 4-thiosalicylic acid isomers, it was found that the compounds studied have small fluorescence quantum yields (phi(F) = 0.003-0.009) and higher ones for triplet formation (phi(T) = 0.10-0.35) and S-H photodissociation (phi(D) = 0.05-0.15). As a difference to the total, the radiationless internal conversion (phi(IC) = 0.6-0.8) was found to be the dominating process.

Ionization of cyclic aromatic amines by free electron transfer: products are governed by molecule flexibility.

The bimolecular electron transfer from secondary aromatic amines to parent radical cations of nonpolar solvents such as alkanes and alkyl chlorides results in the synchronous formation of amine radical cations as well as aminyl radicals, in comparable amounts. If as for cyclic aromatic amines (c-Ar(2)NH) the intramolecular bending motion around the amine group is restricted in varying degrees (acridane, phenothiazine) or completely prevented (carbazole), then this picture is modified. In the free electron transfer, the completely rigid carbazole yields exclusively amine radical cations. Acridane exhibits preferred radical cations, but phenothiazine with the more flexible six-membered ring involving sulfur as a further heteroatom follows the common two-product rule; see above. The phenomenon is reasoned by a peculiarity in the bimolecular free electron transfer where after diffusional approach the actual electron jump proceeds in the ultrashort time range. Therefore, it reflects femtosecond molecular motions which, in the case of free mobility, continuously pass through different molecule conformers, combined with fluctuation of the electrons of the responsible molecular n-orbitals. The rigid systems, however, do not show this effect because of a nonexistent bending motion.

Radiation-induced free-radical transformation of phospholipids: MALDI-TOF MS study.

Under the action of free-radical reaction initiators on membrane phospholipids, complex processes are taking place in both hydrophobic and hydrophilic parts of the phospholipids. Realization of these processes results in a mixture consisting of the initial lipids and their peroxidation and fragmentation products. Identification of compounds in such mixtures requires analytical methods of high sensitivity, reproducibility and accuracy to be applied. These properties are characteristic of the matrix-assisted laser desorption/ionization time-of-flight mass spectrometry (MALDI-TOF MS) method. In the studies of radiation-induced free-radical transformations of phosphatidylglycerol, the MALDI-TOF MS in combination with thin layer chromatography (TLC) has been shown to be able to detect and identify products of free-radical transformations taking place in both hydrophilic and hydrophobic parts of the phospholipid. Thus, the MALDI-TOF MS can serve as a suitable analytical tool to investigate free-radical transformations of lipids.

Formation of phosphatidic acid, ceramide, and diglyceride on radiolysis of lipids: identification by MALDI-TOF mass spectrometry.

By use of matrix-assisted laser desorption/ionization time-of-flight mass spectrometry, phosphatidic acid was found to be the main product of gamma radiolysis of cardiolipin, phosphatidylinositol, and phosphatidylglycerol. It has been shown that gamma irradiation of such glycolipids as cerebroside and galactosyl diglyceride leads to formation of ceramide and diglyceride, respectively. These findings, combined with those obtained earlier, allowed an assumption to be made that, owing to radiation-induced free radical fragmentation of lipids in their polar moiety, formation of signaling molecules can occur.

Highly conjugated p-quinonoid pi-extended tetrathiafulvalene derivatives: a class of highly distorted electron donors.

A new class of pi-extended TTF-type electron donors (11 a-c) has been synthesized by Wittig-Horner olefination of bianthrone (9) with 1,3-dithiole phosphonate esters (10 a-c). In cyclic voltammetry experiments, donors 11 a-c reveal a single, electrochemically irreversible oxidation-yielding the corresponding dicationic products-at relatively low oxidation potentials (approximately 0.7-0.8 V). Theoretical calculations, performed at the DFT level (B3 P86/6-31 G*), predict a highly-folded C(2h) structure for 11 a. In the ground state, the molecule adopts a double saddle-like conformation to compensate the steric hindrance. The calculations suggest that the intramolecular charge transfer associated with the HOMO-->LUMO transition is responsible for an absorption band observed above 400 nm. While the radical cation 11 a*+ retains the folded C(2h) structure predicted for the neutral molecule as the most stable conformation, the dication 11 a(2+) has a fully aromatic D(2) structure, formed by an orthogonal 9,9'-bianthryl central unit to which two singly-charged dithiole rings are attached. The drastic conformational changes that compounds 11 undergo upon oxidation account for their electrochemical properties. By means of pulse radiolysis measurements, radical-induced one-electron oxidation of 11 a-c was shown to lead to the radical cation species (11 a-c*+), which were found to disproportionate with generation of the respective dication species (11 a-c(2+)) and the neutral molecules (11 a-c).

Thiyl radicals in biosystems: inhibition of the prostaglandin metabolism by the cis-trans-isomerization of arachidonic acid double bonds.

This paper describes parallel and comparative experiments on the enzymatic cyclooxygenase (COX) driven conversion of arachidonic acid (AA, all-cis-5,8,11,14-eicosatetraenoic acid) into prostaglandins by using pure arachidonic acid and AA samples containing relatively small amounts of thiyl radical induced trans-isomers. The experiments were performed in a liquid aqueous model system using COX-1 as well as by the in vitro feeding of VD(3)-differentiated and LPS-stimulated promyelocytic HL-60 cells using the cell's own COX-2. In the model solution, all the different test methods used (oxygen consumption, ROS induced luminescence, and TMPD oxidation) indicated the greatly disproportionate, non-stoichiometric inhibition of the prostaglandin metabolism by the trans-isomers. Accordingly, measurements performed in the cell system gave comparable results: both luminescence ROS detection and the ELISA test on PGE(2) expression resulted in the strong inhibition of the prostaglandin metabolism. We interpret these findings as enzyme blocking caused by just one mono-trans-isomerized double bond of AA.