Metallic micronutrients are associated with the structure and function of the soil microbiome.

The relationship between metallic micronutrients and soil microorganisms, and thereby soil functioning, has been little explored. Here, we investigate the relationship between metallic micronutrients (Fe, Mn, Cu, Zn, Mo and Ni) and the abundance, diversity and function of soil microbiomes. In a survey across 180 sites in China, covering a wide range of soil conditions the structure and function of the soil microbiome are highly correlated with metallic micronutrients, especially Fe, followed by Mn, Cu and Zn. These results are robust to controlling for soil pH, which is often reported as the most important predictor of the soil microbiome. An incubation experiment with Fe and Zn additions for five different soil types also shows that increased micronutrient concentration affects microbial community composition and functional genes. In addition, structural equation models indicate that micronutrients positively contribute to the ecosystem productivity, both directly (micronutrient availability to plants) and, to a lesser extent, indirectly (via affecting the microbiome). Our findings highlight the importance of micronutrients in explaining soil microbiome structure and ecosystem functioning.

Three source-partitioning of CO2 fluxes based on a dual-isotope approach to investigate interactions between soil organic carbon, glucose and straw.

Inputs of available organic materials into soil alter the decomposition of soil organic matter (SOM), a process called priming effect. Organic carbon (C) inputs in terrestrial ecosystems are common from various sources (e.g. rhizodeposits, plant residues, microbial necromass) simultaneously, but their interactions as well as mutual effects on SOM decomposition are unknown because multisource partitioning of pools and fluxes was not available. A dual-isotope approach (identical materials except for straw being possessed two 13C abundances) was adopted to partition total CO2 emission from three C sources: SOM, glucose and straw. Cumulative CO2 efflux was quantified into straw-derived (558 µg C g-1), glucose-derived (480 µg C g-1) and SOM-derived (58 µg C g-1) CO2 during the first 7 days of incubation. Glucose or straw addition induced positive SOM priming, whereas glucose combined with straw resulted in higher SOC loss than that induced by single addition of glucose or straw after day 7. The Spearman's correlation showed that the interactions between glucose and straw shifted from increased CO2 evolved during their intensive decomposition (days 1 to 3) to mutual constraint on mineralization during the late stage (days 5 to 7). This study provides evidences for the suitability of the dual-isotope approach to partition multiple sources of CO2 fluxes and C pools, and evaluates their individual or mutual contributions to SOM priming, thus, implicating C sequestration in terrestrial ecosystems.

Effects of magnetic biochar-microbe composite on Cd remediation and microbial responses in paddy soil.

There is growing global interest in the bioremediation of cadmium (Cd) using combinations of biochar and microorganisms. However, the interactions among biochar, introduced and indigenous microorganisms remain unclear. Accordingly, a 90 day microcosm experiment was conducted to investigate this by adding Bacillus sp. K1 strain inoculated rice straw biochar (SBB) and magnetic straw biochar (MBB) into a Cd contaminated paddy soil from Hunan, China. All treatments were incubated aerobically (60% water holding capacity) or anaerobically for 90 d. During both soil incubations, Bacillus sp. K1 successfully colonized in soil with composites applications. Soil pH was significantly increased from acid to neutral, and available Cd decreased with the addition of both composites. The better remediation efficiency of MBB than SBB under anerobic conditions was attributed to the transformation of acetic acid-extractable Cd into the residual fraction, caused by Cd2+ bonding with crystal Fe3O4. The application of the two kinds of composites caused similar changes to both microbial communities. There was a slight decrease in indigenous microbial alpha diversity with the MBB aerobic application, while the total population number of bacteria was increased by 700%. Both the redundancy analysis and Mantel analyses indicated that pH and microbial biomass C contributed to the colonization of Bacillus sp. K1 with SBB under aerobic conditions, and with MBB under anerobic conditions, respectively. The research provides a new insight into interactive effects and investigates immobilization mechanisms involved of bacterial/biochar composites in anaerobic and aerobic soils.

Performance and mechanisms for remediation of Cd(II) and As(III) co-contamination by magnetic biochar-microbe biochemical composite: Competition and synergy effects.

Contaminations by heavy metals in the environment always exist as a mixture of both metal and metalloid. Thus, it is a challenge to simultaneously remove both components due to their adverse chemical behaviors. Herein, effective cadmium (Cd) and arsenic (As) removal in aqueous solution was achieved by use of a novel composite, which was synthesized by Bacillus sp. K1 loaded onto Fe3O4 biochar (MBB). The combination with Bacillus sp. K1 provided new biosorption sites such as amine and hydroxyl groups in the composite surface, which significantly increasing the removal capability of Cd(II) by 230% when compared with the raw magnetic biochar. Both competition and synergy effects were found in binary system. Adsorption of As(III) extended active sites for capturing Cd(II), which appeared on the surface of the MBB as type B ternary surface complexes. The maximum adsorption capacity of Cd(II) and As(III) reached 25.04 and 4.58 mg g-1 in a binary system, respectively. In summary, this environmentally friendly composite is promising for simultaneous Cd(II) and As(III) remediation.

Changes in microbial community structure due to chronic trace element concentrations in different sizes of soil aggregates.

Studies on the effects of trace elements (TEs) (e.g. Cu, Cd, Zn) on soil microbial communities have provided useful information on the toxicity of TEs to microbes. However, previous studies mainly focused on the effects of TEs on microbial community structure in intact soil, while there are few studies on the impact of TEs on microbial community structure in soil aggregates. In this study, soils previously polluted for 20 years, and now containing low and high TE concentrations derived from, now abandoned, metal smelters were sampled from the surface layer (0-15 cm) of two adjacent Chinese paddy fields. The aim was to determine the effects of TEs on the soil microbial biomass and community structure in different sized soil aggregates. Long-term high TE pollution decreased microbial biomass concentration and species, changed the proportion of bacteria and fungi and decreased the diversity of bacteria in the different sized aggregates. The microbial communities in soil aggregates became clustered with increasing TE concentrations.

Elevated temperature shifts soil N cycling from microbial immobilization to enhanced mineralization, nitrification and denitrification across global terrestrial ecosystems.

We assessed the response of soil microbial nitrogen (N) cycling and associated functional genes to elevated temperature at the global scale. A meta-analysis of 1,270 observations from 134 publications indicated that elevated temperature decreased soil microbial biomass N and increased N mineralization rates, both in the presence and absence of plants. These findings infer that elevated temperature drives microbially mediated N cycling processes from dominance by anabolic to catabolic reaction processes. Elevated temperature increased soil nitrification and denitrification rates, leading to an increase in N2 O emissions of up to 227%, whether plants were present or not. Rates of N mineralization, denitrification and N2 O emission demonstrated significant positive relationships with rates of CO2 emissions under elevated temperatures, suggesting that microbial N cycling processes were associated with enhanced microbial carbon (C) metabolism due to soil warming. The response in the abundance of relevant genes to elevated temperature was not always consistent with changes in N cycling processes. While elevated temperature increased the abundances of the nirS gene with plants and nosZ genes without plants, there was no effect on the abundances of the ammonia-oxidizing archaea amoA gene, ammonia-oxidizing bacteria amoA and nirK genes. This study provides the first global-scale assessment demonstrating that elevated temperature shifts N cycling from microbial immobilization to enhanced mineralization, nitrification and denitrification in terrestrial ecosystems. These findings infer that elevated temperatures have a profound impact on global N cycling processes with implications of a positive feedback to global climate and emphasize the close linkage between soil microbial C and N cycling.

Response of soil native microbial community to Eschericia coli O157:H7 invasion.

The presence of Eschericia coli O157:H7 in the natural environment is a serious threat to human health. The native microbial community in soil plays an important role in resisting E. coli O157:H7 invasion. This study examined the responses of soil microbial community to E. coli O157:H7 invasion during a 32-day incubation. The E. coli O157:H7 persisted longer in γ-irradiated soil than non-irradiated soil while glucose addition decreased its persistence in the irradiated soil which was associated with an increasing recovery of the native community. The invasion of E. coli O157:H7 increased soil organic carbon mineralization, an indicator of microbial activity, in both non-irradiated and irradiated soils, while glucose addition significantly promoted the carbon mineralization process. The 16S rRNA sequencing data showed the gradual recovery of the native bacterial population including specific taxa such as proteobacteria and actinobacteria following irradiation. It is concluded that soil microbial function and structure can affect persistence of E. coli O157:H7 and that lower biodiversity of the native community favors its persistence.

Maize straw biochar addition inhibited pentachlorophenol dechlorination by strengthening the predominant soil reduction processes in flooded soil.

Biochar has received increasing attention for its multifunctional applications as a soil amendment. The dual effect of biochar on reductive organic pollutants and soil biogeochemical processes under anaerobic environments in parallel has yet to be fully explored. In this study, anaerobic batch experiments were conducted to examine the effect of biochar on both reductive transformation of pentachlorophenol (PCP) and soil redox processes in flooded soil. Compared to biochar-free controls, the reductive dechlorination of PCP was significantly inhibited following biochar addition, with the inhibition degree increased with increasing amount of biochar. Dissimilatory iron and sulfate reduction, as well as the production of methane, were significantly enhanced following biochar addition. The bacterial and archaeal communities showed a functional selection responded to the addition of biochar and PCP, with the core functional groups at the genus level including Dethiobacter, Clostridium, Geosporobacter, Desulfuromonas, Desulfatitalea, and Methanosarcina. These findings indicated that biochar could affect soil microbial redox processes and may act as an electron mediator altering electron distribution from PCP dechlorination to the predominant soil reduction processes, and increase understanding regarding biochar's comprehensive effects on the remediation of natural flooded soil polluted by chlorinated organic pollutants that can be degraded reductively.

Long-term nutrient inputs shift soil microbial functional profiles of phosphorus cycling in diverse agroecosystems.

Microorganisms play an important role in soil phosphorus (P) cycling and regulation of P availability in agroecosystems. However, the responses of the functional and ecological traits of P-transformation microorganisms to long-term nutrient inputs are largely unknown. This study used metagenomics to investigate changes in the relative abundance of microbial P-transformation genes at four long-term experimental sites that received various inputs of N and P nutrients (up to 39 years). Long-term P input increased microbial P immobilization by decreasing the relative abundance of the P-starvation response gene (phoR) and increasing that of the low-affinity inorganic phosphate transporter gene (pit). This contrasts with previous findings that low-P conditions facilitate P immobilization in culturable microorganisms in short-term studies. In comparison, long-term nitrogen (N) input significantly decreased soil pH, and consequently decreased the relative abundances of total microbial P-solubilizing genes and the abundances of Actinobacteria, Gammaproteobacteria, and Alphaproteobacteria containing genes coding for alkaline phosphatase, and weakened the connection of relevant key genes. This challenges the concept that microbial P-solubilization capacity is mainly regulated by N:P stoichiometry. It is concluded that long-term N inputs decreased microbial P-solubilizing and mineralizing capacity while P inputs favored microbial immobilization via altering the microbial functional profiles, providing a novel insight into the regulation of P cycling in sustainable agroecosystems from a microbial perspective.

Assembly of root-associated microbiomes of typical rice cultivars in response to lindane pollution.

Organochlorine pesticides have been extensively used for many years to prevent insect diseases of rice (Oryza sativa L.), but little is known about their residual impacts on the underground micro-ecology in anaerobic environment. In this glasshouse study, we characterized the lindane effects on the assembly of root-associated microbiomes of commonly used indica, japonica and hybrid rice cultivars, and their feedback in turn, in modifying lindane anaerobic dissipation during 60 days' rice production. The results showed that rice growth inhibited the anaerobic dissipation of lindane, but was not affected apparently by lindane at initial spiked concentration of 4.62 and 18.54 mg kg-1 soil. Suppressed removal of lindane in rice planted treatments as compared with that in unplanted control was likely due to inhibited reductive dechlorination induced by a comprehensive effect of radial O2 secretion of rice root and co-occurring Fe(III) reduction that consumed electron competitively in rice rhizosphere. However, the hybrid cultivar exhibited a less suppression than the conventional cultivars in high polluted soils. Bacteria was more sensitively responded to lindane pollution than fungal taxa, and Actinobacteria, Chloroflexi, Verrucomicrobia and Proteobacteria were the main different phyla between hybrid and conventional cultivars, with a more stable community structure exhibited in the hybrid rice under lindane stress. Our study highlights the assembly and variation of root-associated microbiomes in responses of lindane pollution, and suggests that hybrid rice cultivar might be most competent for cultivation in paddy fields polluted by lindane and other organochlorine pesticides, especially in the area with high residual levels.

Remediation of heavy metal contaminated soils by biochar: Mechanisms, potential risks and applications in China.

There are global concerns about heavy metal (HM) contamination in soils, which in turn has produced an increased demand for soil remediation. Biochar has been widely documented to effectively immobilize metals in contaminated soils and has received increasing attention for use in soil remediation. Here, we review recent progresses in understanding metal-biochar interactions in soils, potential risks associated with biochar amendment, and application of biochar in soil remediation in China. These recent studies indicate that: (1) the remediation effect depends on the characteristics of both biochar and soil and their interactions; (2) biochar applications could decrease the mobility/bioavailability of HMs in soils and HM accumulation in plants; and (3) despite its advantages, biochar applications could pose ecological and health risks, e.g., by releasing toxic substances into soils or by inhalation of biochar dust. Research gaps still exist in the development of practical methods for preparing and applying different biochars that target specific HMs. In the future, the long term effects and security of biochar applications on soil remediation, soil organisms and plant growth need to be considered.

Sorption of pentachlorophenol and phenanthrene by humic acid-coated hematite nanoparticles.

Hematite nanoparticles (NPs) exist naturally and ubiquitously in soil, and they are always associated with soil organic matter by forming organic-inorganic complexes. In this work, hematite NPs coated with peat humic acid (HApeat) and soil humic acid (HAsoil) were chosen as sorbents for hydrophobic organic contaminants (HOCs) to simulate the sorption processes in soil. Ionizable pentachlorophenol (PCP) and non-ionizable phenanthrene (PHE) were selected as representative HOCs. Compared with sorption isotherms of uncoated hematite NPs, the coating of HA onto the surface of hematite NPs substantially increased its sorption affinity for PCP and PHE by about 1-2 orders of magnitude, and the increasing degree was positively correlated to the HA content. These phenomena emphasized the dominant role of HA in the sorption process. The reduced polarity and the introduction of functional groups contributed to the enhanced sorption of HOCs on HA-coated hematite NPs. Furthermore, HApeat-hematite NPs showed higher sorption affinity for both PCP and PHE than HAsoil-hematite NPs, which was mainly due to the lower polarity and higher hydrophobicity of HApeat-hematite NPs. The sorption of PCP and PHE on HA-coated hematite NPs was inhibited obviously with increasing pH values and the pH effect on PCP sorption was more significant than that of PHE, due to the deprotonation of functional groups within adsorbed HA, the loose structure of adsorbed HA and the dissociation of PCP. Our findings elucidated the mechanisms involved in HOCs sorption processes by HA-hematite NPs and provided a theoretical basis for environmental remediation with natural NPs (e.g., hematite NPs).

Co-transport of phenanthrene and pentachlorophenol by natural soil nanoparticles through saturated sand columns.

Mobile colloids such as nanoparticles (NPs) are often considered to affect the fate and transport of various contaminants by serving as carriers. Many studies have focused on the effect of engineered NPs on contaminant transport. To date, very little information is available on the co-transport of natural soil NPs with typical organic contaminants. This study investigated the co-transport of phenanthrene (PHE) and pentachlorophenol (PCP) by three soil NPs through saturated sand columns. Soil NPs with high organic matter and particle concentration were the most effective in transporting PHE through columns. In addition, soil NPs significantly increased the transport of low-level PHE (0.2 mg L-1) but there was no obvious increase at 1.0 mg L-1 PHE. This is attributed to a higher ratio of NP-associated PHE to total PHE at a low-level than at a high-level during transport. In contrast to PHE, the chemical speciation of PCP determined its mobility, which was highly dependent on solution pH. At pH 6.5, anionic PCP became dominant and soluble in the effluent. This could account for the negligible effect of soil NPs on PCP mobility. At pH 4.0, however, neutral molecular PCP dominated and, as expected, decreased mobility of PCP occurred. Soil NPs considerably enhanced the transport of neutral PCP in NP-associated forms compared to controls, due to the high hydrophobicity and sorption affinity of PCP to NPs. The mobility of soil NPs was little affected by PHE and PCP under tested conditions. This study indicated that highly mobile soil NPs may be effective carriers for organic contaminants and give a new direction to polluted site remediation by using a natural material, e.g., soil.

Changes in nitrogen related functional genes along soil pH, C and nutrient gradients in the charosphere.

The interface between biochar and soil differs from both the bulk soil and the biochar itself, and has been termed the "charosphere". However, a complete definition of the charosphere, including aspects of size, properties, functional reach and effects on soil processes, is still required. In this study, the distributions of functional genes related to the soil N cycle within the charosphere were investigated over a multi-sectional gradient. We found that concentrations of dissolved organic carbon (DOC), available phosphorus and exchangeable cations (Ca2+, Mg2+, K+) increased with proximity to the biochar surface (termed the 'near charosphere'). Similarly, the abundance of bacterial amoA was greater in the near charosphere, while archaeal amoA abundance was relatively homogenous. This taxonomic asymmetry resulted in a shift in the predominant ammonia-oxidizers from ammonia-oxidizing bacteria (AOB) to ammonia-oxidizing archaea (AOA) in the far charosphere. This was associated with other factors such as decreasing pH and carbon availability with increasing distance from the biochar. Moreover, the ratio of nosZ/(nirS + nirK) genes also showed functionally asymmetry in the charosphere: increasing with increasing distance from the biochar. This is the first study to map spatial distributions of a set functional genes related to soil N cycling in the soil around biochar. This exploration into the underlying heterogeneity of biochar-affected mechanisms of N transformation provides new insight into the functional geometry of the charosphere.

Nitrate supply and sulfate-reducing suppression facilitate the removal of pentachlorophenol in a flooded mangrove soil.

An anaerobic incubation was launched with varying nitrate (1, 5, 10 and 20 mM exogenous NaNO3) and molybdate (20 mM Na2MoO4, a sulfate-reducing inhibitor) additions to investigate the characteristics of PCP dechlorination, as well as the reduction of natural co-occurring electron acceptors, including NO3-, Fe(III) and SO42-, and the responses of microbial community structures under a unique reductive mangrove soil. Regardless of exogenous addition, nitrate was rapidly eliminated in the first 12 days. The reduction process of Fe(III) was inhibited, while that of SO42- reduction depended on addition concentration as compared to the control. PCP was mainly degraded from orth-position, forming the only intermediate 2,3,4,5-TeCP by anaerobic microbes, with the highest PCP removal rate of average 21.9% achieved in 1 and 5 mM NaNO3 as well as 20 mM Na2MoO4 treatments and the lowest of 7.5% in 20 mM NaNO3 treatment. The effects of nitrate on PCP dechlorination depended on addition concentration, while molybdate promoted PCP attenuation significantly. Analyses of the Illumina sequencing data and the relative abundance of dominant microorganisms indicated that the core functional groups regulated PCP removal at genera level likely included Bacillus, Pesudomonas, Dethiobacter, Desulfoporosinus and Desulfovbrio in the nitrate treatments; while that was likely Sedimentibacter and Geosporobacter_Thermotalea in the molybdate treatment. Nitrate supplement but not over supplement, or addition of molybdate are suggested as alternative strategies for better remediation in the nitrate-deficient and sulfur-accumulated soil ecosystem contaminated by PCP, through regulating the growth of core functional groups and thereby coordinating the interaction between dechlorination and its coupled soil redox processes due to shifts of more available electrons to dechlorination. Our results broadened the knowledge regarding microbial PCP degradation and their interactions with natural soil redox processes under anaerobic soil ecosystems.

A comprehensive mitigation strategy for heavy metal contamination of farmland around mining areas - Screening of low accumulated cultivars, soil remediation and risk assessment.

A three-year field test was conducted in an area surrounding past mining activity (mining area) to investigate the value of a novel comprehensive remediation strategy for Cd and Pb contamination, which included screening of low accumulated vegetable cultivars that take up Cd and Pb less than normal cultivars, in situ soil remediation using different soil amendments, and health risk assessment that evaluates the possibility of safe consumption for the vegetables. Results showed that cultivar Huoqing 91-5C of which vegetable was selected as a low accumulator of Cd and Pb in a soil contaminated with 0.5 mg kg-1 and 8180 mg kg-1 total Cd and Pb concentrations, respectively. Addition of 20 t ha-1 of biochar with 2 t ha-1 of calcium superphosphate in 10 cm depth could decrease available Cd and Pb by 70% and 85% after 1 year, respectively. Following treatments, hazard quotients for adults and children were below 1, indicating that the vegetables grown were safe for human consumption. The total cost of remediation was $3885 ha-1, so the cost of the remediation of the combination of Cd and Pb was economic in this mining area.

Soil available phosphorus content drives the spatial distribution of archaeal communities along elevation in acidic terrace paddy soils.

Archaea play crucial roles in geochemical cycles and influence the emission of greenhouse gases in acidic soils. However, little is known about the distribution pattern of total archaeal diversity and community composition with increasing elevation, especially in acidic agricultural ecosystems. Terraces, characterized by vertical climate changes and unique hydrological properties, are "natural experiments" to explore the spatial distribution of microorganisms along elevation in paddy soils. Here we investigated the diversity and structure of soil archaeal communities in nine increasingly elevated acidic paddy soils of the Yunhe terrace, China. Archaeal communities were dominated by Methanomicrobia of Euryarchaeota (38.5%), Group 1.1a-associated cluster (SAGSCG-1) of Thaumarchaeota (22.0%) and Subgroup-6 (previously described as crenarchaeotal group 1.3b) of Bathyarchaeota (17.8%). The archaeal phylotype richness decreased with increasing elevation. Both the species richness and phylogenetic diversity of the archaeal communities were significantly negatively correlated with soil available phosphorus (AP) content according to linear regression analyses. The archaeal communities differed greatly between soils of increasing elevation, and were roughly clustered into three groups, mostly in relation to AP contents. A variation partitioning analysis further confirmed that edaphic factors including the content of AP (17.1%), nitrate (7.83%), soil organic carbon (4.69%), dissolved organic carbon (4.22%) and soil pH (4.07%) shaped the archaeal community. The variation of soil properties were probably induced by elevation. The co-occurrence network indicated a modular structure of the archaeal community. Overall, our results emphasized that soil AP content was the best predictor of archaeal diversity and community structure, and the impacts of elevation on soil archaeal communities were not diminished by long-term rice cultivation, although minor compared with the effects of soil properties.

Effects of Cd, Cu, Zn and their combined action on microbial biomass and bacterial community structure.

Heavy metal pollution can decrease the soil microbial biomass and significantly alter microbial community structure. In this study, a long-term field experiment (5 years) and short-term laboratory experiment (40 d) were employed to evaluate the effects of heavy metals (Cd, Cu, Zn), and their combinations at different concentrations, on the soil microbial biomass and the bacterial community. The ranges of heavy metal concentration in the long-term and short-term experiments were similar, with concentration ranges of Cd, Cu and Zn of about 0.3-1.5, 100-500, and 150-300 mg kg-1, respectively. Microbial biomass decreased with increasing soil heavy metal concentrations in both the long-term and short-term experiments. The interaction between soil physicochemical factors (pH, TN, TC) and heavy metals (Cd, Cu, Zn) played a major role in change in the bacterial community in long-term polluted soil. In the laboratory experiment, although each heavy metal had an adverse effect on the microbial biomass and community structure, Cu appeared to have a greater role in the changes compared to Cd and Zn. However, the synergistic effects of the heavy metals were greater than those of the single metals and the synergistic effect between Cu and Cd was greater than that of Cu and Zn.

Genetic correlation network prediction of forest soil microbial functional organization.

Soil ecological functions are largely determined by the activities of soil microorganisms, which, in turn, are regulated by relevant interactions between genes and their corresponding pathways. Therefore, the genetic network can theoretically elucidate the functional organization that supports complex microbial community functions, although this has not been previously attempted. We generated a genetic correlation network based on 5421 genes derived from metagenomes of forest soils, identifying 7191 positive and 123 negative correlation relationships. This network consisted of 27 clusters enriched with sets of genes within specific functions, represented with corresponding cluster hubs. The clusters revealed a hierarchical architecture, reflecting the functional organization in the soil metagenomes. Positive correlations mapped functional associations, whereas negative correlations often mapped regulatory processes. The potential functions of uncharacterized genes were predicted based on the functions of located clusters. The global genetic correlation network highlights the functional organization in soil metagenomes and provides a resource for predicting gene functions. We anticipate that the genetic correlation network may be exploited to comprehensively decipher soil microbial community functions.

Combined application of biochar and nitrogen fertilizer benefits nitrogen retention in the rhizosphere of soybean by increasing microbial biomass but not altering microbial community structure.

The application of nitrogen fertilizer and biochar (N-biochar) is one of promising management practices recommended to improve soil fertility. A field trial based on seven treatments (control, urea, urea + biochar, KNO3, KNO3 + biochar, (NH4)2SO4, (NH4)2SO4 + biochar) were carried out in the field. Both rhizosphere and bulk soils were collected after harvest to investigate the response of microorganisms to N-biochar and the influence on N retention. The results showed that N-biochar increased total microbial biomass but did not change the relative proportions of microbial groups compared with the control. Principal component analysis suggested that microbial community structure in the rhizosphere differed from that in bulk soils, with lower ratios of G+/G- bacterial PLFAs, Saturated/Monounsaturated PLFAs and Cyclopropyl/Precursor PLFAs in the rhizosphere. More abundant biomass and better developed community structure in the rhizosphere could be ascribed to labile C from root exudates. The increased N content in soil-plant system as well as the relative high concentration of total N in the rhizosphere indicated that N-biochar benefited N retention towards near-root areas. Redundancy analysis and correlation analysis suggested that both fungi and bacteria were involved in promoting N retention, especially G- bacteria. Biochar-induced high soil pH favored G- bacteria development while the importance of labile C availability from biochar to G- bacterial activity.