Proton-induced direct and indirect damage of plasmid DNA.

Clustered DNA damage induced by 10, 20 and 30 MeV protons in pBR322 plasmid DNA was investigated. Besides determination of strand breaks, additional lesions were detected using base excision repair enzymes. The plasmid was irradiated in dry form, where indirect radiation effects were almost fully suppressed, and in water solution containing only minimal residual radical scavenger. Simultaneous irradiation of the plasmid DNA in the dry form and in the solution demonstrated the contribution of the indirect effect as prevalent. The damage composition slightly differed when comparing the results for liquid and dry samples. The obtained data were also subjected to analysis concerning different methodological approaches, particularly the influence of irradiation geometry, models used for calculation of strand break yields and interpretation of the strand breaks detected with the enzymes. It was shown that these parameters strongly affect the results.

Dehalogenation of 5-halo-uracil molecules induced by 100 keV proton collisions.

Neutral and cationic halogen loss of singly and doubly ionised 5-X-uracil (X = F, Cl, Br, I) after collisions with 100 keV protons have been studied in the gas phase. The rates of these dissociation channels are strongly dependant on the nature of the halogen substituent. It is very weak in the case of fluorine but is a dominant channel for iodine. Dissociation mechanisms are proposed for a number of significant channels associated to dehalogenation. It is suggested that some final ion products originate from specific processes. For instance, ion products of mass 38, 39 and 40 amu are very sensitive to the nature of the primarily ejected halogen and result from pathways associated to dehydrogenation and transient formation of the dehalogenated uracil cation.