Bulk soil bacterial community structure and function respond to long-term organic and conventional agricultural management.

Understanding how soil microbiomes respond to management is essential to maximizing soil health. We contrasted microbiomes in bulk soil under long-term organic and conventional management in a grain production setting. Management category significantly impacted the relative abundances of 17% of the most abundant taxa. Both conventional and organic management favored particular taxa, but these effects were not reflected in summary richness and diversity indices. Management systems also lead to differences in soil edaphic properties, including pH and nutrient status; this may have been the mechanism by which change in the prokaryote community was enacted. Community change between years of sampling was less pronounced, with only 6 taxa differentially abundant among years. Management category also impacted the abundance of functional genes related to the production and consumption of greenhouse gases. Particulate methane monooxygenase genes were more frequent in soil under organic management, while soluble methane monooxygenase genes were more frequent in soil under conventional management in 1 of 2 years. Nitrous oxide reductase genes were significantly less abundant in soils under second-year alfalfa than in soils under corn. This work highlights the ability of agricultural management to enact broad rearrangements to the structure of bulk soil bacterial communities.

Topographic and soil influences on root productivity of three bioenergy cropping systems.

Successful modeling of the carbon (C) cycle requires empirical data regarding species-specific root responses to edaphic characteristics. We address this need by quantifying annual root production of three bioenergy systems (continuous corn, triticale/sorghum, switchgrass) in response to variation in soil properties across a toposequence within a Midwestern agroecosystem. Using ingrowth cores to measure annual root production, we tested for the effects of topography and 11 soil characteristics on root productivity. Root production significantly differed among cropping systems. Switchgrass root productivity was lowest on the floodplain position, but root productivity of annual crops was not influenced by topography or soil properties. Greater switchgrass root production was associated with high percent sand, which explained 45% of the variation. Percent sand was correlated negatively with soil C and nitrogen and positively with bulk density, indicating this variable is a proxy for multiple important soil properties. Our results suggest that easily measured soil parameters can be used to improve model predictions of root productivity in bioenergy switchgrass, but the edaphic factors we measured were not useful for predicting root productivity in annual crops. These results can improve C cycling modeling efforts by revealing the influence of cropping system and soil properties on root productivity.

Crop residues: the rest of the story.

Sinking agricultural botanical and soil residues to the deep seafloor may not be a viable option for long-term carbon sequestration.

Nitrogen fertilizer effects on soil carbon balances in midwestern U.S. agricultural systems.

A single ecosystem dominates the Midwestern United States, occupying 26 million hectares in five states alone: the corn-soybean agroecosystem [Zea mays L.-Glycine max (L.) Merr.]. Nitrogen (N) fertilization could influence the soil carbon (C) balance in this system because the corn phase is fertilized in 97-100% of farms, at an average rate of 135 kg N x ha(-1) x yr(-1). We evaluated the impacts on two major processes that determine the soil C balance, the rates of organic-carbon (OC) inputs and decay, at four levels of N fertilization, 0, 90, 180, and 270 kg/ha, in two long-term experimental sites in Mollisols in Iowa, USA. We compared the corn-soybean system with other experimental cropping systems fertilized with N in the corn phases only: continuous corn for grain; corn-corn-oats (Avena sativa L.)-alfalfa (Medicago sativa L.; corn-oats-alfalfa-alfalfa; and continuous soybean. In all systems, we estimated long-term OC inputs and decay rates over all phases of the rotations, based on long-term yield data, harvest indices (HI), and root:shoot data. For corn, we measured these two ratios in the four N treatments in a single year in each site; for other crops we used published ratios. Total OC inputs were calculated as aboveground plus belowground net primary production (NPP) minus harvested yield. For corn, measured total OC inputs increased with N fertilization (P < 0.05, both sites). Belowground NPP, comprising only 6-22% of total corn NPP, was not significantly influenced by N fertilization. When all phases of the crop rotations were evaluated over the long term, OC decay rates increased concomitantly with OC input rates in several systems. Increases in decay rates with N fertilization apparently offset gains in carbon inputs to the soil in such a way that soil C sequestration was virtually nil in 78% of the systems studied, despite up to 48 years of N additions. The quantity of belowground OC inputs was the best predictor of long-term soil C storage. This indicates that, in these systems, in comparison with increased N-fertilizer additions, selection of crops with high belowground NPP is a more effective management practice for increasing soil C sequestration.