Quantification of Slip Band Distribution in Polycrystals: An Automated Fast Fourier Transform Decomposition Approach.

Plastic deformation is accumulated in slip bands in a wide variety of engineering alloys. Multiple material and loading conditions impact their distribution and degree of slip localization, but these effects are rarely quantified. To tackle this, the current work introduces a fast Fourier transform (FFT) decomposition method and applies it to a tensile-loaded polycrystalline nickel-based superalloy imaged via high-resolution digital image correlation and electron backscatter diffraction. This approach identifies active slip planes over the FFT images of individual grains and performs inverse transforms such that slip band traces with shared orientations are isolated. This technique enabled the largest quantification of slip band spacings and in-plane strains to date, with a total of 6,557 slip bands detected. The results show that the slip band spacings increase with grain size, with no evident dependence on grain orientation and Schmid factor. Slip bands are found to develop similar spacings along different octahedral planes and continue to spread over larger regions of the grain as the resolved shear stress of the active slip system increases. The FFT decomposition technique, which could be employed with multiple microscopy techniques, will allow for much-needed large-scale quantitative studies of slip localization.

Molecular Characterization of SehB, a Type II Antitoxin of Salmonella enterica Serotype Typhimurium: Amino Acid Residues Involved in DNA-Binding, Homodimerization, Toxin Interaction, and Virulence.

Salmonella enterica serotype Typhimurium is a bacterium that causes gastroenteritis and diarrhea in humans. The genome of S. Typhimurium codes for diverse virulence factors, among which are the toxin-antitoxin (TA) systems. SehAB is a type II TA, where SehA is the toxin and SehB is the antitoxin. It was previously reported that the absence of the SehB antitoxin affects the growth of S. Typhimurium. In addition, the SehB antitoxin can interact directly with the SehA toxin neutralizing its toxic effect as well as repressing its own expression. We identified conserved residues on SehB homologous proteins. Point mutations were introduced at both N- and C-terminal of SehB antitoxin to analyze the effect of these changes on its transcription repressor function, on its ability to form homodimers and on the virulence of S. Typhimurium. All changes in amino acid residues at both the N- and C-terminal affected the repressor function of SehB antitoxin and they were required for DNA-binding activity. Mutations in the amino acid residues at the N-terminal showed a lower capacity for homodimer formation of the SehB protein. However, none of the SehB point mutants were affected in the interaction with the SehA toxin. In terms of virulence, the eight single-amino acid mutations were attenuated for virulence in the mouse model. In agreement with our results, the eight amino acid residues of SehB antitoxin were required for its repressor activity, affecting both homodimerization and DNA-binding activity, supporting the notion that both activities of SehB antitoxin are required to confer virulence to Salmonella enterica.

Specific detection of naturally occurring hepatitis C virus mutants with resistance to telaprevir and boceprevir (protease inhibitors) among treatment-naïve infected individuals.

The use of telaprevir and boceprevir, both protease inhibitors (PI), as part of the specifically targeted antiviral therapy for hepatitis C (STAT-C) has significantly improved sustained virologic response (SVR) rates. However, different clinical studies have also identified several mutations associated with viral resistance to both PIs. In the absence of selective pressure, drug-resistant hepatitis C virus (HCV) mutants are generally present at low frequency, making mutation detection challenging. Here, we describe a mismatch amplification mutation assay (MAMA) PCR method for the specific detection of naturally occurring drug-resistant HCV mutants. MAMA PCR successfully identified the corresponding HCV variants, while conventional methods such as direct sequencing, endpoint limiting dilution (EPLD), and bacterial cloning were not sensitive enough to detect circulating drug-resistant mutants in clinical specimens. Ultradeep pyrosequencing was used to confirm the presence of the corresponding HCV mutants. In treatment-naïve patients, the frequency of all resistant variants was below 1%. Deep amplicon sequencing allowed a detailed analysis of the structure of the viral population among these patients, showing that the evolution of the NS3 is limited to a rather small sequence space. Monitoring of HCV drug resistance before and during treatment is likely to provide important information for management of patients undergoing anti-HCV therapy.

Molecular epidemiology of autochthonous dengue virus strains circulating in Mexico.

Dengue virus (DENV) is the most important arthropod-borne viral infection in humans. Here, the genetic relatedness among autochthonous DENV Mexican isolates was assessed. Phylogenetic and median-joining network analyses showed that viral strains recovered from different geographic locations are genetically related and relatively homogeneous, exhibiting limited nucleotide diversity.

Is ultra-violet radiation the main force shaping molecular evolution of varicella-zoster virus?

BACKGROUND: Varicella (chickenpox) exhibits a characteristic epidemiological pattern which is associated with climate. In general, primary infections in tropical regions are comparatively less frequent among children than in temperate regions. This peculiarity regarding varicella-zoster virus (VZV) infection among certain age groups in tropical regions results in increased susceptibility during adulthood in these regions. Moreover, this disease shows a cyclic behavior in which the number of cases increases significantly during winter and spring. This observation further supports the participation of environmental factors in global epidemiology of chickenpox. However, the underlying mechanisms responsible for this distinctive disease behavior are not understood completely. In a recent publication, Philip S. Rice has put forward an interesting hypothesis suggesting that ultra-violet (UV) radiation is the major environmental factor driving the molecular evolution of VZV. DISCUSSION: While we welcomed the attempt to explain the mechanisms controlling VZV transmission and distribution, we argue that Rice's hypothesis takes lightly the circulation of the so called "temperate VZV genotypes" in tropical regions and, to certain degree, overlooks the predominance of such lineages in certain non-temperate areas. Here, we further discuss and present new information about the overwhelming dominance of temperate VZV genotypes in Mexico regardless of geographical location and climate. SUMMARY: UV radiation does not satisfactorily explain the distribution of VZV genotypes in different tropical and temperate regions of Mexico. Additionally, the cyclic behavior of varicella does not shown significant differences between regions with different climates in the country. More studies should be conducted to identify the factors directly involved in viral spreading. A better understanding of the modes of transmissions exploited by VZV and their effect on viral fitness is likely to facilitate the implementation of preventive measures for disease control.

La fotocoagulación por rayos infrarrojos en el tratamiento de la enfermedad hemorroidaria / Infrared photocoagulation in hemorrhoidal disease treatment

Propósitos. Evaluar la eficacia de la fotocoagulación por rayos infrarrojos en el tratamiento de la enfermedad hemorroidaria grados I y II, en el Servicio de Coloproctología del Hospital General de México de la SSa. Material y métodos. Se incluyeron 60 pacientes con hemorragia transanal como síntoma único, sin patología anorrectal agregada. Fueron 30 pacientes del sexo femenino y 30 del sexo masculino, con una edad media de 39.9 años. Cada paciente recibió de 1 o 4 sesiones de fotocoagulación de acuerdo con los resultados que se obtuvieron en cada una. Se utilizó el fotocoagulador marca Redfield. Técnica. La aplicación de los disparos fue en forma de diamante o en arco iris, con una duración de 1.5 segundos cada uno. El tiempo de seguimiento fue de 24 meses. Resultados. Se obtuvo respuesta favorable en el 66.6 por ciento de los casos a partir de la segunda aplicación, y del 93.4 por ciento al término del estudio; en 4 pacientes (6.6 por ciento no hubo respuesta favorable y fueron tratados quirúrgicamente. Conclusiones. El tratamiento de la enfermedad hemorroidaria con fotocoagulación por rayos infrarrojos ofrece una buena alterantiva en los grados I y II, es indoloro, no requiere hospitalización y su costo es bajo

Validación de la logoaudiometría ósea / Validation of speech audiometry by bone conduction

Se planteó la validación de una prueba de logoaudiometría por vía ósea en pacientes con hípoacusias sensoriales y conductivas a fin de obtener una prueba que ayude en el diagnóstico y encamine a una adecuada rehabilitación. Las pruebas se realizaron en tres audiómetros de tres unidades médicas diferentes en tres grupos de pacientes, uno con perdida conductiva, otro sensorial y el tercero con audición normal. Se obtuvo un 97 por ciento de sensibilidad y 96.6 por ciento de especificidad de la prueba. Aunque son resultados preliminares, se concluye que la prueba es útil para la detección de reserva coclear en pacientes con pérdidas auditivas severas y profundas, sobre todo en pacientes con patología de oído medio