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1.
Nat Commun ; 14(1): 7649, 2023 Nov 27.
Artigo em Inglês | MEDLINE | ID: mdl-38012138

RESUMO

The identification and characterization of enzyme function is largely lacking behind the rapidly increasing availability of large numbers of sequences and associated high-resolution structures. This is often hampered by lack of knowledge on in vivo relevant substrates. Here, we present a case study of a high-resolution structure of an unusual orphan lipase in complex with an endogenous C18 monoacylglycerol ester reaction intermediate from the expression host, which is insoluble under aqueous conditions and thus not accessible for studies in solution. The data allowed its functional characterization as a prototypic long-chain monoacylglycerol lipase, which uses a minimal lid domain to position the substrate through a hydrophobic tunnel directly to the enzyme's active site. Knowledge about the molecular details of the substrate binding site allowed us to modulate the enzymatic activity by adjusting protein/substrate interactions, demonstrating the potential of our findings for future biotechnology applications.


Assuntos
Lipase , Monoacilglicerol Lipases , Monoacilglicerol Lipases/genética , Monoacilglicerol Lipases/metabolismo , Lipase/metabolismo , Domínios Proteicos , Domínio Catalítico
2.
Methods Mol Biol ; 2410: 149-175, 2022.
Artigo em Inglês | MEDLINE | ID: mdl-34914046

RESUMO

Coronaviruses are causative agents of different zoonosis including SARS, MERS, or COVID-19 in humans. The high transmission rate of coronaviruses, the time-consuming development of efficient anti-infectives and vaccines, the possible evolutionary adaptation of the virus to conventional vaccines, and the challenge to cover broad human population worldwide are the major reasons that made it challenging to avoid coronaviruses outbreaks. Although, a plethora of different approaches are being followed to design and develop vaccines against coronaviruses, most of them target subunits, full-length single, or only a very limited number of proteins. Vaccine targeting multiple proteins or even the entire proteome of the coronavirus is yet to come. In the present chapter, we will be discussing multi-epitope vaccine (MEV) and multi-patch vaccine (MPV) approaches to design and develop efficient and sustainably successful strategies against coronaviruses. MEV and MPV utilize highly conserved, potentially immunogenic epitopes and antigenic patches, respectively, and hence they have the potential to target large number of coronavirus proteins or even its entire proteome, allowing us to combat the challenge of its evolutionary adaptation. In addition, the large number of human leukocyte antigen (HLA) alleles targeted by the chosen specific epitopes enables MEV and MPV to cover broader global population.


Assuntos
COVID-19 , Infecções por Coronavirus/prevenção & controle , Epitopos de Linfócito B , Epitopos de Linfócito T , Vacinas Virais , Antígenos Virais/imunologia , COVID-19/prevenção & controle , Humanos , Proteoma , SARS-CoV-2 , Glicoproteína da Espícula de Coronavírus , Vacinas Virais/imunologia
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