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1.
PLoS One ; 16(9): e0257835, 2021.
Artigo em Inglês | MEDLINE | ID: mdl-34591916

RESUMO

This study surveyed visitor perceptions of the resources of the Guanwu National Forest Recreation Area (GNFRA) in Taiwan', their perceptions toward the ecosystem service functions of the GNFRA, their expectations and opinions on its management, and their recreational activities. Independent sample t-tests and one-way analysis of variance (ANOVA) were used to examine the influences of the backgrounds of respondents on their perceptions toward the ecosystem service functions of the GNFRA. The importance-performance analysis (IPA) method was used to explore evaluations by tourists on the management of the GNRFA. Finally, a global positioning system (GPS) was used to process records of recreational activities by tourists within the GNFRA to understand the movement of tourists during their recreational activities within the GNRFA. The results showed that visitors to the GNRFA regarded its recreational resources to be valuable and that they had a high willingness to revisit. The visitors also showed a certain understanding of the ecosystem services provided by the forest ecosystem. There were significant differences in perceptions of ecosystem services among visitors of different backgrounds. In addition, the results of IPA showed the "importance" of perceptions and "performance" within the opinions of tourists on the management of the forest recreation area. The records of recreational activities by tourists showed that they experienced the most benefits when experiencing picturesque scenery along walking trails. The results of this study can contribute to future management of the GNRFA.


Assuntos
Conservação dos Recursos Naturais/métodos , Viagem/psicologia , Ecossistema , Sistemas de Informação Geográfica , Humanos , Percepção , Opinião Pública , Taiwan
2.
Front Microbiol ; 10: 983, 2019.
Artigo em Inglês | MEDLINE | ID: mdl-31191462

RESUMO

Short-read next generation sequencing (NGS) platforms can easily and quickly generate thousands to hundreds of thousands of sequences per sample. However, the limited length of these sequences can cause problems during fungal taxonomic identification. Here we validate the use of Pacbio sequencing, a long-read NGS method, for characterizing the fungal community (mycobiome) of Castanopsis carlesii deadwood. We report the successful use of Pacbio sequencing to generate long-read sequences of the full-length (500-780 bp) fungal ITS regions of the C. carlesii mycobiome. Our results show that the studied deadwood mycobiome is taxonomically and functionally diverse, with an average of 85 fungal OTUs representing five functional groups (animal endosymbionts, endophytes, mycoparasites, plant pathogens, and saprotrophs). Based on relative abundance data, Basidiomycota were the most frequently detected phyla (50% of total sequences), followed by unidentified phyla, and Ascomycota. However, based on presence/absence data, the most OTU-rich phyla were Ascomycota (58% of total OTUs, 72 OTUs) followed by Basidiomycota and unidentified phyla. The majority of fungal OTUs were identified as saprotrophs (70% of successfully function-assigned OTUs) followed by plant pathogens. Finally, we used phylogenetic analysis based on the full-length ITS sequences to confirm the species identification of 14/36 OTUs with high bootstrap support (99-100%). Based on the numbers of sequence reads obtained per sample, which ranged from 3,047 to 13,463, we conclude that Pacbio sequencing can be a powerful tool for characterizing moderate- and possibly high-complexity fungal communities.

3.
Molecules ; 21(1): 67, 2016 Jan 07.
Artigo em Inglês | MEDLINE | ID: mdl-26751439

RESUMO

Amentotaxus, a genus of Taxaceae, is an ancient lineage with six relic and endangered species. Four Amentotaxus species, namely A. argotaenia, A. formosana, A. yunnanensis, and A. poilanei, are considered a species complex because of their morphological similarities. Small populations of these species are allopatrically distributed in Asian forests. However, only a few codominant markers have been developed and applied to study population genetic structure of these endangered species. In this study, we developed and characterized polymorphic expressed sequence tag-simple sequence repeats (EST-SSRs) from the transcriptome of A. formosana. We identified 4955 putative EST-SSRs from 68,281 unigenes as potential molecular markers. Twenty-six EST-SSRs were selected for estimating polymorphism and transferability among Amentotaxus species, of which 23 EST-SSRs were polymorphic within Amentotaxus species. Among these, the number of alleles ranged from 1-4, the polymorphism information content ranged from 0.000-0.692, and the observed and expected heterozygosity were 0.000-1.000 and 0.080-0.740, respectively. Population genetic structure analyses confirmed that A. argotaenia and A. formosana were separate species and A. yunnanensis and A. poilanei were the same species. These novel EST-SSRs can facilitate further population genetic structure research of Amentotaxus species.


Assuntos
DNA de Plantas/genética , Etiquetas de Sequências Expressas , Genoma de Planta , Polimorfismo Genético , Taxaceae/genética , Transcriptoma , Alelos , Espécies em Perigo de Extinção , Marcadores Genéticos , Heterozigoto , Sequenciamento de Nucleotídeos em Larga Escala , Repetições de Microssatélites , Filogenia , Taxaceae/classificação
4.
Glob Chang Biol ; 20(12): 3756-66, 2014 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-25141823

RESUMO

Altitudinal treelines are typically temperature limited such that increasing temperatures linked to global climate change are causing upslope shifts of treelines worldwide. While such elevational increases are readily predicted based on shifting isotherms, at the regional level the realized response is often much more complex, with topography and local environmental conditions playing an important modifying role. Here, we used repeated aerial photographs in combination with forest inventory data to investigate changes in treeline position in the Central Mountain Range of Taiwan over the last 60 years. A highly spatially variable upslope advance of treeline was identified in which topography is a major driver of both treeline form and advance. The changes in treeline position that we observed occurred alongside substantial increases in forest density, and lead to a large increase in overall forest area. These changes will have a significant impact on carbon stocking in the high altitude zone, while the concomitant decrease in alpine grassland area is likely to have negative implications for alpine species. The complex and spatially variable changes that we report highlight the necessity for considering local factors such as topography when attempting to predict species distributional responses to warming climate.


Assuntos
Altitude , Florestas , Modelos Biológicos , Temperatura , Árvores/crescimento & desenvolvimento , Sequestro de Carbono/fisiologia , Simulação por Computador , Geografia , Densidade Demográfica , Taiwan
5.
BMC Res Notes ; 7: 255, 2014 Apr 23.
Artigo em Inglês | MEDLINE | ID: mdl-24755442

RESUMO

BACKGROUND: Keteleeria davidiana var. formosana (Pinaceae), Taiwan cow-tail fir, is an endangered species listed on the IUCN Red List of Threatened Species and only two populations remain, both on the Taiwan Island. Sixteen polymorphic microsatellite loci were developed in an endangered and endemic gymnosperm species, Keteleeria davidiana var. formosana, and were tested in an additional 6 taxa, K. davidiana var. calcarea, K. davidiana var. chienpeii, K. evelyniana, K. fortunei, K. fortunei var. cyclolepis, and K. pubescens, to evaluate the genetic variation available for conservation management and to reconstruct the phylogeographic patterns of this ancient lineage. FINDINGS: Polymorphic primer sets were developed from K. davidiana var. formosana using the modified AFLP and magnetic bead enrichment method. The number of alleles ranged from 3 to 16, with the observed heterozygosity ranging from 0.28 to 1.00. All of the loci were found to be interspecifically amplifiable. CONCLUSIONS: These polymorphic and transferable loci will be potentially useful for future studies that will focus on identifying distinct evolutionary units within species and establishing the phylogeographic patterns and the process of speciation among closely related species.


Assuntos
DNA de Plantas/genética , Espécies em Perigo de Extinção , Especiação Genética , Repetições de Microssatélites , Pinaceae/genética , Alelos , Sequência de Bases , Cruzamento , Conservação dos Recursos Naturais , Loci Gênicos , Marcadores Genéticos , Heterozigoto , Dados de Sequência Molecular , Filogenia , Pinaceae/classificação , Polimorfismo Genético , Taiwan
6.
Am J Bot ; 99(4): e157-9, 2012 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-22447985

RESUMO

PREMISE OF THE STUDY: Fifteen microsatellite loci were developed in an endangered species, Amentotaxus formosana, and were tested in an additional three species, A. argotaenia, A. yunnanensis, and A. poilanei, to evaluate the population structure for conservation efforts and reconstruct the phylogeographic patterns of this ancient lineage. METHODS AND RESULTS: Polymorphic primer sets were developed from A. formosana; the number of alleles ranged from two to 10, with an observed heterozygosity ranging from 0 to 0.60. All of the loci were found to be interspecifically amplifiable. CONCLUSIONS: These polymorphic and transferable loci will be potentially useful for future studies that will focus on identifying distinct genetic units within species and establishing the phylogeographic patterns and the process of speciation among closely related species.


Assuntos
DNA de Plantas/genética , DNA de Plantas/isolamento & purificação , Loci Gênicos/genética , Repetições de Microssatélites/genética , Taxaceae/genética , Dados de Sequência Molecular , Polimorfismo Genético
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