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1.
Sci Rep ; 14(1): 17251, 2024 Jul 27.
Artigo em Inglês | MEDLINE | ID: mdl-39060361

RESUMO

The grid-based precipitation dataset is an important source for studying precipitation change in the high mountains of Asia due to where precipitation stations are sparse. It is essential to evaluate the accuracy of grid-based precipitation datasets in the high mountains of Asia before selecting an appropriate grid-based dataset. Therefore, this study comprehensively evaluated the precipitation errors of four commonly utilized precipitation datasets (multi-source weighted-ensemble precipitation (MSWEP), global precipitation climatology centre (GPCC), global precipitation measurement (GPM), and soil moisture to rain-advanced scatterometer (SM2RAIN-ASCAT)) in the high mountains of Asia from temporal and spatial perspectives. It then decomposed the precipitation errors to reveal their sources. The results showed that MSWEP, GPCC, GPM, and SM2RAIN-ASCAT overestimated precipitation amount and probability compared with station observations. Meanwhile, all precipitation data sets except MSWEP data underestimated precipitation in the dry season. In terms of the average values of the error metrics, GPCC performed the best. There was an evident annual periodicity in the error assessment metrics for the four precipitation data sets. Multiple linear regression analysis revealed that four precipitation-related factors (false alarm precipitation, missed amount of precipitation, precipitation detected presented, and precipitation detected event) explained the root mean square error values for four precipitation data sets, with precipitation detected presented having the largest weight. The root mean square error of each product exhibits periodic fluctuations with changes in precipitation quantity, attributed to the occurrences of precipitation detected presented and precipitation detected events. These findings provide useful reference information for correcting biases in precipitation data sets for high mountains of Asia.

2.
Sensors (Basel) ; 24(13)2024 Jun 24.
Artigo em Inglês | MEDLINE | ID: mdl-39000870

RESUMO

In recent years, advancements in the Internet of Things (IoT), manufacturing processes, and material synthesis technologies have positioned flexible sensors as critical components in wearable devices. These developments are propelling wearable technologies based on flexible sensors towards higher intelligence, convenience, superior performance, and biocompatibility. Recently, two-dimensional nanomaterials known as MXenes have garnered extensive attention due to their excellent mechanical properties, outstanding electrical conductivity, large specific surface area, and abundant surface functional groups. These notable attributes confer significant potential on MXenes for applications in strain sensing, pressure measurement, gas detection, etc. Furthermore, polymer substrates such as polydimethylsiloxane (PDMS), polyurethane (PU), and thermoplastic polyurethane (TPU) are extensively utilized as support materials for MXene and its composites due to their light weight, flexibility, and ease of processing, thereby enhancing the overall performance and wearability of the sensors. This paper reviews the latest advancements in MXene and its composites within the domains of strain sensors, pressure sensors, and gas sensors. We present numerous recent case studies of MXene composite material-based wearable sensors and discuss the optimization of materials and structures for MXene composite material-based wearable sensors, offering strategies and methods to enhance the development of MXene composite material-based wearable sensors. Finally, we summarize the current progress of MXene wearable sensors and project future trends and analyses.

3.
Sci Rep ; 13(1): 21336, 2023 Dec 04.
Artigo em Inglês | MEDLINE | ID: mdl-38049499

RESUMO

Revealing changes in actual evapotranspiration is essential to understanding regional extreme hydrological events (e.g., droughts). This study utilized the Global Land Evaporation Amsterdam Model (GLEAM) to analyse the spatial and temporal characteristics of actual evapotranspiration over 40 years in the Southeast River basin of China. The relationship between changes in actual evapotranspiration and the drought index was quantified. The results indicated a significant increase in actual evapotranspiration in the Southeast River basin from 1981 to 2020 (2.51 mm/year, p < 0.01). The actual evapotranspiration components were dominated by vegetation transpiration (73.45%) and canopy interception (18.26%). The actual evapotranspiration was closely related to the normalised difference vegetation index (r = 0.78, p < 0.01), and vegetation changes could explain 10.66% of the increase of actual evapotranspiration in the Southeast River basin since 2000. Meanwhile, actual evapotranspiration and standardised precipitation evapotranspiration index (SPEI) showed a highly significant negative spatial correlation, with a Moran's I index of - 0.513. The rise in actual evapotranspiration is an important trigger factor for seasonal droughts in the region. Therefore, these results help deepen the understanding of hydro-climatic process changes in the southeastern coastal region of China.

4.
Sci Total Environ ; 901: 165941, 2023 Nov 25.
Artigo em Inglês | MEDLINE | ID: mdl-37536586

RESUMO

Estuary and coastal waters are hotspot areas for microplastics (MPs) pollution. MPs of varying sizes converge in this complex nearshore environment. Aggregation is an important process that affects the transport and fate of MPs in the aqueous environment. Nevertheless, the influence of different factors on the aggregation behavior and the aggregates structure of MPs is unclear. In this study, the aggregation behavior and the aggregates structure of polyethylene microplastics (PEs) of different sizes under the impact of nearshore environmental conditions (i.e., salinity gradient, dissolved organic matter-DOM, turbulent flow) were investigated. The results show that particle size was the dominant factor affecting the stability of PEs in the aqueous environment, and the critical coagulation concentration (CCC) of PEs shifts to the right with increasing size. It was also found that the size of PEs stable aggregates is negatively correlated with the turbulent kinetic energy dissipation rate. The particle size of PEs can significantly affect the fractal dimension (FD) of stable aggregates, and the smaller the particle size, the more compact the aggregates formed. Moreover, salinity and DOM control the size and FD of PEs stable aggregates through different mechanisms. The findings of this study will be helpful for the prediction of the transport and fate of MPs in the aqueous environment.

5.
Biomimetics (Basel) ; 8(2)2023 May 26.
Artigo em Inglês | MEDLINE | ID: mdl-37366818

RESUMO

Artificial skin, also known as bioinspired electronic skin (e-skin), refers to intelligent wearable electronics that imitate the tactile sensory function of human skin and identify the detected changes in external information through different electrical signals. Flexible e-skin can achieve a wide range of functions such as accurate detection and identification of pressure, strain, and temperature, which has greatly extended their application potential in the field of healthcare monitoring and human-machine interaction (HMI). During recent years, the exploration and development of the design, construction, and performance of artificial skin has received extensive attention from researchers. With the advantages of high permeability, great ratio surface of area, and easy functional modification, electrospun nanofibers are suitable for the construction of electronic skin and further demonstrate broad application prospects in the fields of medical monitoring and HMI. Therefore, the critical review is provided to comprehensively summarize the recent advances in substrate materials, optimized fabrication techniques, response mechanisms, and related applications of the flexible electrospun nanofiber-based bio-inspired artificial skin. Finally, some current challenges and future prospects are outlined and discussed, and we hope that this review will help researchers to better understand the whole field and take it to the next level.

6.
Chemistry ; 29(43): e202301015, 2023 Aug 01.
Artigo em Inglês | MEDLINE | ID: mdl-37191050

RESUMO

Here the supramolecular liquid crystalline (LC) phase behavior of a series of fullerene block molecules was investigated regarding spacer length, alkyl tail length and temperature. These compounds exhibit several lamellar LC phases with different packings of self-organized fullerene two-dimensional (2D) crystals. With a short hexamethylene spacer, they form sandwich-like structures with triple or quadruple fullerene layers. By increasing the spacer length to 10 or 12 carbons, a composite layers-in-lamella superlattice structure with alternating soft hydrocarbon single layers and fullerene single or double layers was obtained. As the molecular configurational freedom between incompatible moieties was enhanced by the elongated spacer, the required cross-sectional fullerene-to-hydrocarbon ratio for the superlattice could be achieved despite of different volume fractions of the blocks. The superlattice phase range is efficiently widened by the design principle of constructing LC molecules with a long spacer, which also provides a facile way to tailor novel superstructures.

7.
Int J Antimicrob Agents ; 61(5): 106787, 2023 May.
Artigo em Inglês | MEDLINE | ID: mdl-36935089

RESUMO

BACKGROUND: Inappropriate antimicrobial use is common among patients undergoing surgery. It remains unclear whether a multi-faceted computerized antimicrobial stewardship programme is effective and safe in reducing inappropriate antimicrobial use in surgical settings. METHODS: A multi-faceted computerized antimicrobial stewardship intervention system was developed, and an open-label, cluster-randomized, controlled trial was conducted among 18 surgical teams that enrolled 2470 patients for open chest cardiovascular surgery. The surgical teams were divided at random into intervention and control groups at a ratio of 1:1. The primary endpoints were days of therapy (DOT)/1000 patient-days, defined daily dose (DDD)/1000 patient-days and length of therapy (LOT)/1000 patient-days. RESULTS: Mean DOT, DDD and LOT per 1000 patient-days were significantly lower in the intervention group compared with the control group (472.2 vs 539.8, 459.5 vs 553.8, and 438.4 vs 488.7; P<0.05), with reductions of 14.2% [95% confidence interval (CI) 11.8-16.7%], 18.7% (95% CI 15.9-21.4%) and 11.9% (95% CI 9.6-14.1%), respectively. The daily risk of inappropriate antimicrobial use after discharge from the intensive care unit decreased by 23.9% [95% CI 15.5-31.5% (incidence risk ratio 0.76, 95% CI 0.69-0.85)] in the intervention group. There was no significant difference in rates of infection or surgical-related complications between the groups. Median antimicrobial costs were significantly lower in the intervention group {873.4 [interquartile range (IQR) 684.5-1255.4] RMB vs 1178.7 (IQR 869.1-1814.5) RMB; P<0.001} (1 RMB approximately equivalent to 0.16 US$ in 2022). CONCLUSIONS: The multi-faceted computerized antimicrobial stewardship interventions reduced inappropriate antimicrobial use safely. CLINICAL TRIAL REGISTRATION: Clinicaltrials.gov: NCT04328090.


Assuntos
Anti-Infecciosos , Gestão de Antimicrobianos , Humanos , Anti-Infecciosos/uso terapêutico , Unidades de Terapia Intensiva , Alta do Paciente
8.
Sci Total Environ ; 871: 162158, 2023 May 01.
Artigo em Inglês | MEDLINE | ID: mdl-36773914

RESUMO

Dissolved organic carbon (DOC) is a key water quality parameter that plays a crucial role in controlling aquatic ecosystems and carbon cycling. Understanding DOC dynamics during hydrological extremes (i.e., droughts and floods) helps in managing water quality, but such variability is rarely studied. Furthermore, how differences in DOC concentrations among phase-by-stages of drought/flood affect simulation performances based on hydrological features remains unclear. Here, phase-by-stages of hydrological drought (flood) were divided into intensification (rising) and recovery (falling) periods based on drought peak intensity (flood peak intensity). The long-term (1976-2019) daily discharge and weekly (biweekly) DOC concentrations from four headwater streams with different watershed sizes (from 9.97 to 119.09 ha) in south-central Ontario, Canada, were used to achieve the above aims. The results showed that (i) the average DOC concentration during intensification (rising) stage of drought (flood) was smaller (larger) than during recovery (falling). (ii) Simulations performed better when accounting for phase-by-stages of drought/flood, with reductions in mean absolute percentage error of 32.85 % and 53.59 % for drought and flood events, respectively. These results will help understand the dynamics of DOC during hydrological extremes and improve simulation performance of numerical models for water quality parameters under changing environmental conditions.

9.
Environ Pollut ; 316(Pt 2): 120649, 2023 Jan 01.
Artigo em Inglês | MEDLINE | ID: mdl-36375574

RESUMO

Microplastics (MPs) are emerging as a class of pollutants that are a potential threat to biological and human health. Aggregation and settling are crucial to controlling MPs transport and environmental fate. However, the influence of clay minerals in the aqueous environment on the aggregation-settling processes of larger size MPs and its mechanisms remain unclear. In this study, homoaggregation of pristine and aged polyethylene microplastics (PEs) and heteroaggregation-settling of PEs with typical clay minerals (chlorite, illite, kaolinite, montmorillonite) under different hydrochemical conditions (NaCl, CaCl2, MgCl2) were systematically investigated. The results showed that the cation type has a greater influence on the homoaggregation system. In detail, the aged PEs is more stable than pristine PEs in monovalent electrolyte solutions, but not in divalent electrolytes. In heteroaggregation systems, electrostatic repulsion dominates the interaction of PEs (pristine, aged) with clay minerals. However, the settling ratio of PEs (pristine, aged) contributed by clay minerals is not very dependent on the clay mineral type. Conversely, high NaCl concentrations are more conducive to the heteroaggregation-settling of PEs, which can be explained by the DLVO theory. The findings of this study provide new insights into the environmental fate and distribution of MPs in natural waters.


Assuntos
Microplásticos , Polietileno , Humanos , Idoso , Argila , Plásticos , Cloreto de Sódio , Minerais
10.
Sci Rep ; 12(1): 20993, 2022 12 05.
Artigo em Inglês | MEDLINE | ID: mdl-36470893

RESUMO

Water scarcity has become a global severe challenge over the past few decades. Quantifying the impact of climate variability and land use on water resource availability is crucial for integrated water resource management. Many studies have focused on blue water but ignored green water which is important in the terrestrial ecosystem, especially on different temporal scales. In this study, we selected the Shanmei Reservoir, the most import drinking water resource for a rapidly development city of Southeast China, as a case for analysis of these impacts for the entire basin. We adopted the Soil and Water Assessment Tool (SWAT) to investigate the spatial and temporal distributions of blue water (BW), green water flow (GWF) and green water storage (GWS) in the Shanmei Reservoir Basin (SRB). The results of the blue and green water components (BW and GW) revealed that SRB is dominated by BW, accounting for 52.6% of the total water resources, while GW accounted for 47.4%. There was an insignificant upward trend of BW and a significant upward trend of GWF, with a tendency rate of 1.125 mm a-1. Precipitation was the key factor affecting BW on annual and monthly scales. The GWF was more sensitive to temperature at both the annual and monthly scales. The GWS was significantly correlated with precipitation at the monthly scale, while insignificant correlation occurred at the annual scale. The spatial distribution of BW was largely dominated by precipitation, and land-use types led to the differentiation of GW. It indicates that the BW of paddy fields is greater than that of forests, while the GWS of forests is greater than that of orchards and rainfed croplands.


Assuntos
Ecossistema , Recursos Hídricos , Rios , Mudança Climática , China , Água
11.
Sensors (Basel) ; 22(21)2022 Nov 05.
Artigo em Inglês | MEDLINE | ID: mdl-36366231

RESUMO

This paper presented a new kind of salinity and temperature dual-parameter sensor based on a fiber ring laser (FRL) with tapered side-hole fiber (SHF) embedded in a Sagnac interferometer. The sensing structure is majorly composed of tapered SHF located in the middle of SHF inside the Sagnac interferometer loop structure. The influences of the SHF's diameters of different tapered in the Sagnac interferometer loop on the FRL sensing system are studied. The presence of air holes in the SHF makes the cladding mode easier to excite, and the interaction between the cladding mode with its surroundings is enhanced, thus having higher salinity sensitivity. Besides, the unique advantages of high resolution, narrower linewidth, and high signal-to-noise ratio (SNR) of fiber laser make the measurement results more accurate. In this experiment, the SHF with different taper diameters was made, and it was found that reducing the diameter of the taper waist diameter could further improve the salinity sensitivity. When the waist diameter was 9.70 µm, the maximum salinity sensitivity of 0.2867 nm/‱ was achieved. Temperature sensing experiments were also carried out. The maximum temperature sensitivity of the FRL sensing system was -0.3041 nm/°C at the temperature range from 20 to 30 °C. The sensor has the characteristics of easy manufacture, good selectivity, and high sensitivity, proving the feasibility of simultaneous measurement of seawater salinity and temperature.

12.
Front Oncol ; 12: 944000, 2022.
Artigo em Inglês | MEDLINE | ID: mdl-36158685

RESUMO

In the worldwide, uterine corpus endometrial carcinoma (UCEC) is the sixth most common malignancy in women, and the number of women diagnosed is increasing. Kinase plays an important role in the occurrence and development of malignant tumors. However, the research about kinase in endometrial cancer is still unclear. Here, we first downloaded the gene expression data of 552 UCEC patients and 23 healthy endometrial tissues from The Cancer Genome Atlas (TCGA), obtained 538 kinase-related genes from the previous literature, and calculated 67 differentially expressed kinases. Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) were referenced to identify multiple important biological functions and signaling pathways related to 67 differentially expressed kinases. Using univariate Cox regression and Least absolute shrinkage and selection operator (LASSO), seven kinases (ALPK2, CAMKV, TTK, PTK6, MAST1, CIT, and FAM198B) were identified to establish a prognostic model of endometrial cancer. Then, patients were divided into high- and low-risk groups based on risk scores. Receiver operating characteristic (ROC) curves were plotted to evaluate that the model had a favorable predictive ability. Kaplan-Meier survival analysis suggested that high-risk groups experienced worse overall survival than low-risk groups. qRT-PCR and ISH assays confirmed the consistency between predicted candidate genes and real sample contents. CIBERSORT algorithm and ssGSEA were adopted to investigate the relationship between this signature and tumor immune microenvironment, and revealed that in low- and high-risk groups, the types of tumor-infiltrating immune cells and the immune cell-related functions were significantly different. In summary, a seven-gene signature risk model has been constructed, and could accurately predict the prognosis of UCEC, which may offer ideas and breakthrough points to the kinase-associated development of UCEC.

13.
Front Bioeng Biotechnol ; 10: 850412, 2022.
Artigo em Inglês | MEDLINE | ID: mdl-35615476

RESUMO

In this study, a one-step electrochemical aptasensor was developed to detect the biomarker vascular endothelial growth factor (VEGF), an important protein in the pathogenesis of many retinal diseases, including age-related macular degeneration, diabetic retinopathy, retinopathy of prematurity, and retinal vein occlusion. The aptamer has a good affinity and can rapidly identify and capture VEGF based on its unique structure. We designed a VEGF aptasensor based on the aptamer recognition and complex metallo nanoenzyme particles as an electron exchange center and bridge between capture DNA and electrode. The aptamers maintained the hairpin structure to avoid nonspecific surface adsorption and expose the capture sequence outwards when the target was inexistent. Conversely, the aptamers opened the hairpin structure to release space to accomplish binding between VEGF and DNA, resulting in increased impedance. The performance of the electrochemical aptasensor is detected by electrochemical impedance spectroscopy (EIS). The limit of detection by EIS was as low as 8.2 pg ml-1, and the linear range was 10 pg ml-1-1 µg ml-1. The electrochemical aptasensor also showed high specificity and reproducibility.

14.
RSC Adv ; 12(3): 1393-1415, 2022 Jan 05.
Artigo em Inglês | MEDLINE | ID: mdl-35425188

RESUMO

Fluorescent probes have been widely studied and applied in environment and health analysis, where among them small molecular "covalent assembly" probes are a novel type of reaction probes with many advantages, including no background interference, remarkable colorimetric change, rapid response, high sensitivity, and strong fluorescent signal. During the past decade, significant contributions have been made globally to both the application and mechanism of covalent assembly probes. In this review, we summarize the recent development of covalent assembly probes, classifying them based on different analytes, such as anions, metal ions, small biological molecules, reactive oxidative spices (ROS), reactive nitrogen species (RNS), nerve agent mimics, and enzymes, and introduce their detection mechanism in detail. Furthermore, the perspective on the next generation of covalent-assembly probes toward biomolecules imaging is presented.

15.
BMJ Open ; 10(11): e039717, 2020 11 26.
Artigo em Inglês | MEDLINE | ID: mdl-33243799

RESUMO

INTRODUCTION: Inappropriate antimicrobial use increases the prevalence of antimicrobial-resistant bacteria. Surgeons are reluctant to implement recommendations of guidelines in clinical practice. Antimicrobial stewardship (AMS) is effective in antimicrobial management, but it remains labour intensive. The computerised decision support system (CDSS) has been identified as an effective way to enable key elements of AMS in clinical settings. However, insufficient evidence is available to evaluate the efficacy of computerised AMS in surgical settings. METHODS AND ANALYSIS: The Evaluate of the Potential Impact of Computerised AMS trial is an open-label, single-centre, two-arm, cluster-randomised, controlled trial, which aims to determine whether a multicomponent CDSS intervention reduces overall antimicrobial use after cardiovascular surgeries compared with usual clinical care in a specialty hospital with a big volume of cardiovascular surgeries. Eighteen cardiovascular surgical teams will be randomised 1:1 to either the intervention or the control arm. The intervention will consist of (1) re-evaluation alerts and decision support for the duration of antimicrobial treatment decision, (2) re-evaluation alerts and decision support for the choice of antimicrobial, (3) quality control audit and feedback. The primary outcome will be the overall systemic antimicrobial use measured in days of therapy (DOT) per admission and DOT per 1000 patient-days over the whole intervention period (6 months). Secondary outcomes include a series of indices to evaluate antimicrobial use, microbial resistance, perioperative infection outcomes, patient safety, resource consumption, and user compliance and satisfaction. ETHICS AND DISSEMINATION: The Ethics Committee in Fuwai Hospital approved this study (2020-1329). The results of the trial will be submitted for publication in a peer-reviewed journal. TRIAL REGISTRATION NUMBER: NCT04328090.


Assuntos
Anti-Infecciosos , Gestão de Antimicrobianos , Antibacterianos/uso terapêutico , Anti-Infecciosos/uso terapêutico , Retroalimentação , Hospitais , Humanos , Ensaios Clínicos Controlados Aleatórios como Assunto
16.
Nat Metab ; 2(9): 946-957, 2020 09.
Artigo em Inglês | MEDLINE | ID: mdl-32895578

RESUMO

Not all individuals age at the same rate. Methods such as the 'methylation clock' are invasive, rely on expensive assays of tissue samples and infer the ageing rate by training on chronological age, which is used as a reference for prediction errors. Here, we develop models based on convoluted neural networks through training on non-invasive three-dimensional (3D) facial images of approximately 5,000 Han Chinese individuals that achieve an average difference between chronological or perceived age and predicted age of ±2.8 and 2.9 yr, respectively. We further profile blood transcriptomes from 280 individuals and infer the molecular regulators mediating the impact of lifestyle on the facial-ageing rate through a causal-inference model. These relationships have been deposited and visualized in the Human Blood Gene Expression-3D Facial Image (HuB-Fi) database. Overall, we find that humans age at different rates both in the blood and in the face, but do so coherently and with heterogeneity peaking at middle age. Our study provides an example of how artificial intelligence can be leveraged to determine the perceived age of humans as a marker of biological age, while no longer relying on prediction errors of chronological age, and to estimate the heterogeneity of ageing rates within a population.


Assuntos
Face , Processamento de Imagem Assistida por Computador/métodos , Estilo de Vida , Envelhecimento da Pele/fisiologia , Adulto , Algoritmos , Bases de Dados Factuais , Aprendizado Profundo , Feminino , Humanos , Imageamento Tridimensional , Masculino , Pessoa de Meia-Idade , Redes Neurais de Computação , Valor Preditivo dos Testes , Transcriptoma
17.
Spectrochim Acta A Mol Biomol Spectrosc ; 229: 117949, 2020 Mar 15.
Artigo em Inglês | MEDLINE | ID: mdl-31864152

RESUMO

The combination of fluorescence method with paper-based diagnostic device is quite suitable in point-of-care testing (POCT). Herein, we designed a novel hybrid fluorescein-based probe ZN-2 and investigated its fluorescent properties thoroughly in the detection of Zn2+. In comparison with the fluorescein-based probe ZN-1, ZN-2 displayed better sensitivity, long-wavelength and faster response to Zn2+ within 20 min. Interestingly, we could achieve ultrasensitive, high-throughput and visual detection in the POCT analysis of Zn2+ by anchoring this probe ZN-2 on the paper-based device. This device with satisfied performance for Zn2+ detection was achieved in real samples including cytochylema, serum and lake water. Finally, the probe ZN-2 was further applied to visualize and monitor the level changes of Zn2+ in the living cells and zebrafishes.


Assuntos
Fluoresceínas/química , Corantes Fluorescentes/química , Testes Imediatos/estatística & dados numéricos , Soro/metabolismo , Água/metabolismo , Peixe-Zebra/metabolismo , Zinco/análise , Animais , Bovinos , Células HeLa , Células Hep G2 , Humanos , Espectrometria de Fluorescência
18.
Bioinformatics ; 36(3): 666-675, 2020 02 01.
Artigo em Inglês | MEDLINE | ID: mdl-31504161

RESUMO

MOTIVATION: Sequencing-based 3D genome mapping technologies can identify loops formed by interactions between regulatory elements hundreds of kilobases apart. Existing loop-calling tools are mostly restricted to a single data type, with accuracy dependent on a predefined resolution contact matrix or called peaks, and can have prohibitive hardware costs. RESULTS: Here, we introduce cLoops ('see loops') to address these limitations. cLoops is based on the clustering algorithm cDBSCAN that directly analyzes the paired-end tags (PETs) to find candidate loops and uses a permuted local background to estimate statistical significance. These two data-type-independent processes enable loops to be reliably identified for both sharp and broad peak data, including but not limited to ChIA-PET, Hi-C, HiChIP and Trac-looping data. Loops identified by cLoops showed much less distance-dependent bias and higher enrichment relative to local regions than existing tools. Altogether, cLoops improves accuracy of detecting of 3D-genomic loops from sequencing data, is versatile, flexible, efficient, and has modest hardware requirements. AVAILABILITY AND IMPLEMENTATION: cLoops with documentation and example data are freely available at: https://github.com/YaqiangCao/cLoops. SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.


Assuntos
Cromatina , Software , Algoritmos , Genoma , Genômica
20.
Inorg Chem ; 58(21): 14478-14489, 2019 Nov 04.
Artigo em Inglês | MEDLINE | ID: mdl-31618013

RESUMO

A new sublimable dicopper(I) complex bearing 1,2-bis(diphenylphosphino)ethane and 5-trifluoromethyl-3-(2'-pyridyl)pyrazolate ligands has been designed and synthesized, and its crystalline solvated and nonsolvated compounds have also been obtained and investigated. It is shown that only the crystalline solvated compound exhibits reversible and selective luminescence vapochromism, arising from its unique "pyridyl/CH2Cl2/pyridyl" organic sandwich-like stacking arrangement revealed by X-ray crystallography, as supported by time-dependent density functional theory calculations. Additionally, the neutral Cu(I) complex has excellent thermal stability and sublimability, good solid-state luminescence properties, and TADF character, and it is suggested to be a good emitter for vapor-deposited organic light-emitting diodes.

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