Weighted Gene Coexpression Network Analysis to Construct Competitive Endogenous RNA Network in Chromogenic Renal Cell Carcinoma.

AIM: This study is aimed at constructing the competing endogenous RNA (ceRNA) network in chromophobe renal cell carcinoma (ChRCC). METHODS: Clinical and RNA sequence profiles of patients with ChRCC, including messenger RNAs (mRNAs), microRNAs (miRNAs), and long noncoding RNAs (lncRNAs), were obtained from The Cancer Genome Atlas (TCGA) database. "edgeR" and "clusterProfiler" packages were utilized to obtain the expression matrices of differential RNAs (DERNAs) and to conduct gene ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) analyses. Weighted gene coexpression network analysis (WGCNA) was performed to screen the highly related RNAs, and miRcode, StarBase, miRTarBase, miRDB, and TargetScan datasets were used to predict the connections between them. Univariate and multivariate Cox proportional hazards regressions were performed in turn to elucidate prognosis-related mRNAs in order to construct the ceRNA regulatory network. RESULTS: A total of 1628 DElncRNAs, 104 DEmiRNAs, and 2619 DEmRNAs were identified. WGCNA showed significant correlation in 1534 DElncRNAs, 98 DEmiRNAs, and 2543 DEmRNAs, which were related to ChRCC. Fourteen DEmiRNAs, 113 DElncRNAs, and 43 DEmRNAs were screened. Nine mRNAs (ALPL, ARHGAP29, CADM2, KIT, KLRD1, MYBL1, PSD3, SFRP1, and SLC7A11) significantly contributed to the overall survival (OS) of patients with ChRCC (P < 0.05). Furthermore, two mRNAs (CADM2 and SFRP1) appeared to be independent risk factors for ChRCC. CONCLUSION: The findings revealed the molecular mechanism of ChRCC and potential therapeutic targets for the disease.

Tamsulosin Monotherapy Is Effective in Reducing Ureteral Stent-related Symptoms: A Meta-analysis of Randomized Controlled Studies.

This study aimed to evaluate the effectiveness of tamsulosin monotherapy for the treatment of ureteral stent-related symptoms (SRSs) and compare it with that of solifenacin monotherapy and combined therapy of tamsulosin and silifenacin. Randomized controlled trials (RCTs), which evaluated the effectiveness of tamsulosin for the treatment of SRSs, were searched from the databases PubMed, EMBASE and the Cochrane Library published up to November 2018. Eight RCTs involving 1087 participants were finally included in this meta-analysis. The results showed that tamsulosin monotherapy could significantly decrease the urinary symptoms [mean difference (MD) -7.56, 95% confidence interval (CI) (-11.47, -3.65), P=0.0001] and body pain [MD -5.25, 95% CI (-8.03, -2.46), P=0.0002], and improve the sexual performance [MD -1.06, 95% CI (-1.89, -0.24), P=0.01] compared with the control group. Moreover, there was no significant difference between tamsulosin monotherapy and solifenacin monotherapy in all outcomes except for significantly better sexual performance in solifenacin group [MD 0.29, 95% CI (0.06, 0.51), P=0.01]. In addition, the effectiveness of combined therapy of tamsulosin and solifenacin was not superior to that of tamsulosin monotherapy. Our study demonstrated that tamsulosin monotherapy was effective for the treatment of patients with SRSs; evident superiority could not be found for therapy of tamsulosin and solifenacin combined.

Complete mitochondrial genome of the natural pentaploid loach, Misgurnus anguillicaudatus (Teleostei: Cypriniformes: Cobitididae).

The complete mitochondrial genome of the natural pentaploid loach Misgurnus anguillicaudatus is a circular molecule of 16,643 bp in size, containing 13 protein-coding genes, 22 transfer RNA (tRNA) genes, two ribosomal RNA (rRNA) genes, and two main noncoding regions (the control region and the origin of the light strand replication). Most of the genes are encoded on the heavy strand, except for ND6 and eight tRNAs. The control region is 918 bp in length and located between the tRNA(Pro) and tRNA(Phe) genes, some typical conserved elements (TAS, CSB1-3 and CSB D-F) were found in this region. All these features reflect a typical vertebrate mitochondrial gene arrangement of the pentaploid M. anguillicaudatus.

Complete mitochondrial genome of Schizopygopsis malacanthus (Teleostei: Cypriniformes: Cyprinidae).

The complete mitochondrial genome of Schizopygopsis malacanthus is a circular molecule of 16,677 bp in size, containing 13 protein-coding genes, 22 transfer RNA (tRNA) genes, 2 ribosomal RNA (rRNA) genes, and 2 main non-coding regions (the control region and the origin of the light strand replication). Most of the genes are encoded on the heavy strand, except for ND6 and eight tRNAs. The control region is 938 bp in length and located between the tRNA(Pro) and tRNA(Phe) genes, some typical conserved elements (TAS, CSB1-3 and CSB D-F) were found in this region. All these features reflect a typical vertebrate mitochondrial gene arrangement of the S. malacanthus.

[Algal community structure and water quality assessment on drawdown area of Kaixian waters in Three Gorges Reservoir during winter storage period].

The old town area of Kaixian county was flooded and showed reservoir characteristics after the water level of Three Gorges Reservoir got 172. 8 m in December 2008. The aquatic ecology and nutritional status of Kaixian drawdown area after water storage are still rarely reported. To understand the current water environment and changes in algal community structure of Kaixian drawdown area after 172.8 m water level, the algal composition, abundance, biomass distribution and changes of its sampling spots including Hanfeng Lake were observed twice during winter storage period in January and December 2009. The trends in phytoplankton community structure were analyzed and the water quality assessment of nutritional status was carried out. The results indicated that 6 phylums, 37 genera, 69 species of phytoplankton in total were identified in the two sampling, and the dominant species were Dinophyta and Cryptophyta. The cell density and biomass in December 2009 were lower than those in January 2009. The evaluation results of algal population structure and pollution indicators showed that the nutrition level of Kaixian drawdown area during the winter storage period was mesotrophic to eutrophic type, while diversity analysis result indicated moderate pollution.

[Seasonal variation of chlorophyll a and its potential relationship with various algal species in Xiaojiang River backwater area, Three Gorges Reservoir].

The seasonal variation of Chlorophyll a (Chla) in Xiaojiang river backwater area from May 2007 to April 2008 with 115 water samples was studied. Three trophic states i.e. Chla < or = 5 microg x L(-1), 5 microg x L(-1) < Chla < or = 19 microg x L(-1) and Chla >19 microg x L(-1), were applied to represent the potential relationship of Chla, algal cell density (CellD) and biomass (BioM) in Xiaojiang river backwater area. The results showed that the algal cell density, biomass and Chla had significantly positive correlations (r > 0.70, Sig. < or = 0.01) and their seasonal variation processes are synchronous. The average values of Chla and biomass of chlorophyta, diatoms, cyanobacteria, dinoflagellate during the study period in Xiaojiang river backwater area were (9.58 +/- 10.77), (1605 +/- 647), (707 +/- 124), (511 +/- 266) and (4019 +/- 1345) microg x L(-1), respectively. When Chla < or = 5 microg x L(-1), chlorophyta, diatoms and Chla were significantly positively correlated; while under 5 microg x L(-1) < Chla < or = 19 microg x L(-1) level, only cyanophytes and Chla showed a significantly positive correlation; At Chla > 19 microg x L(-1) level, Chla was positively correlated to dinoflagellate, and there were no significant correlations among Chla and other algae.

[Seasonal succession of phytoplankton function groups in the Xiaojiang (Pengxi) River backwater area, Three Gorges Reservoir].

Phytoplankton function classification came from the physiological characteristics and habitat adaption of specific phytoplankton species, matching the growth strategy of the species with the habitat template. The phytoplankton functional groups were classified based on the C-R-S growth strategy and its favored habitat. Phytoplankton function classification was applied in this study to the backwater area of Xiaojiang (Pengxi) River (XBA) of the Yangtze in the Three Gorges Reservoir. 26 functional groups were classified based on the phytoplankton species data from May, 2007 to April, 2009. J/F/H1/P/Lo/LM/B/Y/G/C was the major functional groups in the 2-year survey, while functional groups of MP/D/X1/X2/W1/W2 were also dominant and frequently detected. The succession traits among 5 sampling spots were generally the same. Succession series of the functional groups between the 2 years showed distinct. However, seasonal succession of functional groups based on the C-R-S strategy showed to have some in common: S/CS type dominated in the spring, while in the summer flood season a co-occurrence of S/CS type and R/CR type was evident. From autumn, the succession from S/CS type to R/CR type which dominated in winter was remarkable. In the February to March, the shift from R/CR type in winter to S/CS type in the early spring was completed in a relatilve short time span.