Infrared and vibrational circular dichroism spectra of methyl ß-D-glucopyranose in water: The application of the quantum cluster growth and clusters-in-a-liquid solvation models.

The infrared (IR) and vibrational circular dichroism (VCD) spectra of methyl ß-D-glucopyranose in water were measured. Both implicit and explicit solvation models were utilized to explain the observed spectra. The vast body of existing experimental and theoretical data suggested that about eight explicit water molecules are needed to account for the solvent effects, supported by the current Quantum Cluster Growth (QCG) analysis. Extensive manual and systematic conformational searches of the molecular target and its water clusters were carried out by using a recently developed conformational searching tool, conformer-rotamer ensemble sampling tool (CREST), and the microsolvation model in the associated QCG code. The Boltzmann averaged IR and VCD spectra of the methyl ß-D-glucopyranose-(water)n (n = 8) conformers in the PCM of water provide better agreement with the experimental ones than those with n = 0, 1, and 2. The explicit solvation with eight water molecules was shown to greatly modify the conformational preference of methyl ß-D-glucopyranose from its monomeric form. Further analyses show that the result is consistent with the existence of long-lived methyl ß-D-glucopyranose monohydrates with the additional explicit water effects being accounted for with the quantum mechanical treatment of the other seven close-by water molecules in the PCM of water.

Stereochemical Properties of Two Schiff-Base Transition Metal Complexes and Their Ligand by Using Multiple Chiroptical Spectroscopic Tools and DFT Calculations.

Two transition metal complexes were synthesized with Ni(II) and Cu(II) using a tetradentate Schiff-base ligand, (R,R) and (S,S)-N,N'-Bis(3,5-di-tert-butylsalicylidene)-1,2-cyclohexanediamine. The stereochemical properties of the ligand and the metal complexes were investigated using a combined experimental and theoretical approach. Multiple spectroscopic techniques, which include IR, vibrational circular dichroism (VCD), UV-Vis and electronic circular dichroism (ECD), as well as Raman and the newly discovered ECD-circularly polarized Raman (i.e., eCP-Raman) spectroscopies were utilized. The good agreement achieved between the experimental and simulated IR, VCD, UV-Vis and ECD spectra of the ligand allowed one to identify the presence of three main ligand conformers in solution, thanks, especially to the high VCD sensitivity to the conformations associated with the tertbutyl groups. The helicity of the metal complexes was identified to be M and P for those with the (R,R) and (S,S) ligands, respectively. Furthermore, eCP-Raman measurements were carried out for the two metal complexes under (near) resonance. Their induced solvent chiral Raman features were explained, and the potential application of eCP-Raman was discussed.

Raman Optical Activity of N-Acetyl-L-Cysteine in Water and in Methanol: The "Clusters-in-a-Liquid" Model and ab Initio Molecular Dynamics Simulations.

Raman and Raman Optical Activity (ROA) spectra of N-acetyl-L-cysteine (NALC), a flexible chiral molecule, were measured in water and in methanol to evaluate the solvent effects. Two different solvation approaches, that is, the DFT based "clusters-in-a-liquid" solvent model and the ab initio molecular dynamics (AIMD) simulations, were applied to simulate the Raman and ROA spectra. Systematic conformational searches were carried out using a recently developed conformational searching tool, CREST, with the inclusion of polarizable continuum model of water and of methanol. The CREST candidates of NALC and the NALC-solvent complexes were re-optimized and their Raman and ROA simulations were done at the B3LYP-D3BJ/def2-TZVP and the B3LYP-aug-cc-pVDZ//cc-pVTZ levels. Also, AIMD simulations, which includes some anharmonic effects and all intermolecular interactions in solution, were performed. By empirically weighting the computed Raman and ROA spectra of each conformer, good agreements with the experimental data were achieved with both approaches, while AIMD offered some improvements in the carbonyl and in the low wavenumber regions over the static DFT approach. The pros and cons of these two different approaches for accounting the solvent effects on Raman and ROA of this flexible chiral system will also be discussed.

Matrix Isolation-Vibrational Circular Dichroism Spectroscopic Study of Conformations and Non-Covalent Interactions of Tetrahydro-2-Furoic Acid.

The conformational landscape and aggregation behaviour of tetrahydro-2-furoic acid (THFA) were investigated by using matrix isolation-vibrational circular dichroism (MI-VCD). The well-resolved experimental MI-IR and MI-VCD features in an argon matrix at 10 K allow one to identify two dominant monomeric conformations as trans-THFA where the hydroxyl and carbonyl groups of COOH are at opposite sides, as well as one cis-conformer. At 24 K and 30 K deposition temperatures, the experimental IR and VCD spectral features reveal further growth of the binary THFA aggregates. Systematic conformational searches identified three vastly different binary binding topologies, resulting in a few hundred stable (THFA)2 conformers. Interestingly, the main binary structures observed correspond to an unusual type of structure which is made of two trans-THFA subunits, in contrast to the usual double H-bonded ring binary structures, identified in a previous solution study. The present work showcases the power of MI-VCD spectroscopy in revealing unusual structures formed in a cold rare gas matrix.

Transfer and Amplification of Chirality Within the "Ring of Fire" Observed in Resonance Raman Optical Activity Experiments.

We report extremely strong chirality transfer from a chiral nickel complex to solvent molecules detected as Raman optical activity (ROA). Electronic energies of the complex were in resonance with the excitation-laser light. The phenomenon was observed for a wide range of achiral and chiral solvents. For chiral 2-butanol, the induced ROA was even stronger than the natural one. The observations were related to so-called quantum (molecular) plasmons that enable a strong chiral Rayleigh scattering of the resonating complex. According to a model presented here, the maximal induced ROA intensity occurs at a certain distance from the solute, in a three-dimensional "ring of fire", even after rotational averaging. Most experimental ROA signs and relative intensities could be reproduced. The effect might significantly increase the potential of ROA spectroscopy in bioimaging and sensitive detection of chiral molecules.

Aggregation of lactic acid in cold rare-gas matrices and the link to solution: a matrix isolation-vibrational circular dichroism study.

The matrix isolation (MI) technique has been utilized with vibrational circular dichroism (VCD) spectroscopy to obtain MI-VCD spectra of lactic acid (LA) in cold argon matrices, in addition to their MI-IR spectra. The experiments have been done at three different deposition temperatures (10 K, 16 K and 24 K) under different Ar flow rates so that different degrees of LA self-aggregation occur. The structural and spectral investigations of the LA monomer and the larger (LA)2,3,4 aggregates have been undertaken at three levels of theory (B3LYP/6-311++G(2d,p), B3LYP-D3BJ/6-311++G(2d,p) and B3LYP-D3BJ/def2-TZVPD) to evaluate the effects of dispersion correction and basis sets on optimized structures, relative conformer energies, and IR/VCD spectral features. Interestingly, the relative conformer energies vary considerably with and without dispersion correction, especially when the molecule gets larger and when it is placed in solution. Such uncertainties in the relative energies and in the vibrational band positions and IR/VCD intensities highlight the challenges in interpreting experimental spectroscopic data, especially those obtained in solution. With the narrow MI-IR band width and highly characteristic MI-VCD spectral features and the trend observed at three temperatures, we have been able to correlate the spectral features confidently to those of the LA monomer and the larger (LA)2,3,4 aggregates, with the aid of theoretical modeling. Finally, by noting the similarity of MI-IR and especially MI-VCD features obtained at 24 K with those of the 0.2 M solution, and with the aid of spectral simulation at the B3LYP-D3BJ/def2-TZVPD level, a composition of LA aggregates dominated by the LA tetramer and trimer has been identified. This conclusion differs from the previous reports where the LA dimer was identified as the main species at even higher concentration in CDCl3. The present work showcases the power of MI-VCD spectroscopy in aiding solution spectral assignment and in providing insight into the complex self-aggregation behavior of LA in solution.

IR, Raman, and Vibrational Optical Activity Spectra of Methyl Glycidate in Chloroform and Water: The Clusters-in-a-liquid Solvation Model.

Solvent effects, in particular those involving water as the solvent, are of significant interest to the chemistry and physics communities. IR, vibrational circular dichroism (VCD), Raman, and Raman optical activity (ROA) spectra of methyl glycidate in two very different solvents, namely CCl4 and water, have been measured experimentally and simulated theoretically. The observed spectra in CCl4 could be well modelled using the polarizable continuum model for the solvent, whereas the situation is much different in water. The experimental VCD spectrum of methyl glycidate in water reveals strong induced VCD signatures in the water bending region, indicating the presence of the relatively long-lived methyl glycidate-watern complexes. We applied the clusters-in-a-liquid approach to identify the dominant methyl glycidate-water1,2 complexes which are the long-lived species responsible for all the spectra observed in water. We examined the influences of solvent dielectric environment and the hydrogen-bonding interactions on the conformational distribution of methyl glycidate. The geometry optimizations, frequency calculations, IR, VCD, Raman and ROA intensity calculations were performed at the B3LYP/6-311++G(2d,p) and aug-cc-pVTZ levels of theory with D3BJ dispersion correction. It is particularly satisfying to note that the clusters-in-a-liquid approach has captured all main experimental features in IR, VCD, Raman and ROA spectra of methyl glycidate in water.

IR and Vibrational Circular Dichroism Spectroscopy of Matrine- and Artemisinin-Type Herbal Products: Stereochemical Characterization and Solvent Effects.

Five Chinese herbal medicines--matrine, oxymatrine, sophoridine, artemisinin, and dihydroartemisinin--were investigated using vibrational circular dichroism (VCD) experiments and density functional theory calculations to extract their stereochemical information. The three matrine-type alkaloids are available from the dry roots of Sophora flavescens and have long been used in various traditional Chinese herbal medicines to combat diseases such as cancer and cardiac arrhythmia. Artemisinin and the related dihydroartemisinin, discovered in 1979 by Professor Youyou Tu, a 2015 Nobel laureate in medicine, are effective drugs for the treatment of malaria. The VCD measurements were carried out in CDCl3 and DMSO-d6, two solvents with different dielectric constants and hydrogen-bonding characteristics. A "clusters-in-a-liquid" approach was used to model both explicit and implicit solvent effects. The studies show that effectively accounting for solvent effects is critical to using IR and VCD spectroscopy to provide unique spectroscopic features to differentiate the potential stereoisomers of these Chinese herbal medicines.

Conservation of Helicity in a Chiral Pyrrol-2-yl Schiff-Base Ligand and Its Transition Metal Complexes.

Tetradentate enantiopure Schiff-base ligand (R,R) and (S,S)-bis(pyrrol-2-ylmethyleneamine)-cyclohexane (H2L) and its five transition metal complexes with Ni(II), Cu(II), Zn(II), Pd(II), and Pt(II) were synthesized. Their structural properties, in particular, the ligand chirality, coordination topology, and the resulting helicity in solution, were investigated by using IR, vibrational circular dichroism (VCD), UV-vis, and electronic circular dichroism (ECD) spectroscopies, complemented with density functional theory calculations. Conformational searches and the associated spectral simulations for the ligands and the complexes were performed at the B3LYP/Gen level. Comparison of the experimental and theoretical IR and VCD spectral signatures of these complexes reveal that the Zn complex takes on a dinuclear, distorted tetrahedral coordination topology around the metal centers, whereas the other four metal complexes adopt the mononuclear, distorted square-planar coordination arrangement in solution. The helicity of all systems studied was identified to be M with the (R,R) ligand and P with the (S,S) ligand, dictated by the ligand chirality and the strong preference for the chair configuration by the cyclohexane moiety. Furthermore, the resulting helicity was found to dominate the ECD spectral features, even though the helicity-determining angles are close to zero for the nearly square-planar metal complexes. The related VCD spectral features are sensitive to both helicity of the complex and the chirality of the ligands, as well as the coordination topology. The simulated ECD spectra for the P and M helicity of the [Zn-(R,R)-L]2 complex shows almost mirror-imaged ECD spectral features, whereas very similar ECD spectra were recently reported for the P- and M-dinuclear Mn complexes with a di-µ-oxo dimetal core as a linker. We highlight the advantages of utilizing multiple chiroptical techniques and theoretical spectral simulations to correlate chiroptical spectral features with multiple chirality and helicity elements in the systems.