Unravelling the Molecular Origin of the Regiospecificity in Extradiol Catechol Dioxygenases.

Many factors have been suggested to control the selectivity for extradiol or intradiol cleavage in catechol dioxygenases. The varied selectivity of model complexes and the ability to force an extradiol enzyme to do intradiol cleavage indicate that the problem may be complex. In this paper we focus on the regiospecificity of the proximal extradiol dioxygenase, homoprotocatechuate 2,3-dioxygenase (HPCD), for which considerable advances have been made in our understanding of the mechanism from an experimental and computational standpoint. Two key steps in the reaction mechanism were investigated: (1) attack of the substrate by the superoxide moiety and (2) attack of the substrate by the oxyl radical generated by O-O bond cleavage. The selectivity at both steps was investigated through a systematic study of the role of the substrate and the first and second coordination spheres. For the isolated native substrate, intradiol cleavage is calculated to be both kinetically and thermodynamically favored, therefore nature must use the enzyme environment to reverse this preference. Two second sphere residues were found to play key roles in controlling the regiospecificity of the reaction: Tyr257 and His200. Tyr257 controls the selectivity by modulating the electronic structure of the substrate, while His200 controls selectivity through steric effects and by preventing alternative pathways to intradiol cleavage.

Reversible C-C bond formation between redox-active pyridine ligands in iron complexes.

This manuscript describes the formally iron(I) complexes L(Me)Fe(Py-R)(2) (L(Me) = bulky ß-diketiminate; R = H, 4-tBu), in which the basal pyridine ligands preferentially accept significant unpaired spin density. Structural, spectroscopic, and computational studies on the complex with 4-tert-butylpyridine ((tBu)py) indicate that the S = 3/2 species is a resonance hybrid between descriptions as (a) high-spin iron(II) with antiferromagnetic coupling to a pyridine anion radical and (b) high-spin iron(I). When the pyridine lacks the protection of the tert-butyl group, it rapidly and reversibly undergoes radical coupling reactions that form new C-C bonds. In one reaction, the coordinated pyridine couples to triphenylmethyl radical, and in another, it dimerizes to give a pyridine-derived dianion that bridges two iron(II) ions. The rapid, reversible C-C bond formation in the dimer stores electrons from the formally reduced metal as a C-C bond in the ligands, as demonstrated by using the coupled diiron(II) complex to generate products that are known to come from iron(I) precursors.

Achieving C-N bond cleavage in dinuclear metal cyanide complexes.

Cleavage of cyanide is more difficult to achieve compared to dinitrogen and carbon monoxide, even though these species contain triple bonds of greater strength. In this work, we have used computational methods to investigate thermodynamic and mechanistic aspects of the C-N bond cleavage process in [L(3)M-CN-M'L(3)] systems consisting of a central cyanide unit bound in an end-on fashion to two terminal metal tris-amide complexes. In these systems, [M] is a d(3) transition metal from the 3d, 4d, 5d, or 6d series and groups 4 through 7, and [L] is either [NH(2)], [NMe(2)], [N(i)PrPh], or [N(t)BuAr]. A comparison of various models for the experimentally relevant [L(3)Mo-CN-MoL(3)] system has shown that while the C-N cleavage step appears to be an energetically favourable process, a large barrier exists for the dissociation of [L(3)Mo-CN-MoL(3)]((-)) into [L(3)Mo-C]((-)) and [N-MoL(3)], which possibly explains why C-N bond scission is not observed experimentally. The general structural, bonding, and thermochemical trends across the transition metal series investigated, indicate that the systems exhibiting the greatest degree of C-N activation, and most favourable energetics for C-N cleavage, also possess the most favourable electronic properties, namely, a close match between the relevant π-like orbitals on the metal-based and cyanide fragments. The negative charge on the cyanide fragment leads to significant destabilization of the π* level which needs to be populated through back-donation from the metal centres in order for C-N bond scission to be achieved. Therefore, metal-based systems with high-lying d(π) orbitals are best suited to C-N cleavage. In terms of chemical periodicity, these systems can be identified as the heavier members within a group and the earlier members within a period. As a consequence, Mo complexes are not well suited to cleaving the C-N bond, whereas the Ta analogues are the most favourable systems and should, in principle, be capable of cleaving cyanide under relatively mild conditions. An important conclusion from this work is that a successful strategy for achieving cleavage of multiply-bonded, and relatively unreactive, molecular fragments, may simply lie in tuning the electronic structures and orbital interactions by judicious choice of metal sites and ligand groups.

Mechanistic study of amine to imine oxidation in a dinuclear Cu(II) complex containing an octaaza dinucleating ligand.

Density functional theory (DFT) calculations have been carried out to elucidate the mechanism of self-oxidation of a Cu(II) complex octaaza dinucleating macrocyclic ligand. The reaction is bimolecular and spontaneous, in which amine groups of one macrocycle are oxidized and the Cu(II) centers of a second macrocylic complex are reduced. No additional oxidation or external base agents are required. DFT calculations predict the reaction to proceed via a two-step mechanism, in which the first step is proton transfer between two reactant complexes. This is followed by a second transfer step in which an electron and proton are transferred together between the two complexes. Concurrent with this external transfer there is also an internal electron transfer in which the ligand reduces the metal center to give the imine product bound to Cu(I). The complexity of this final step differs from the generally accepted mechanisms for transition metal catalyzed amine to imine oxidation in which protons and electrons are transferred individually.

Dinitrogen activation by Fryzuk's [Nb(P(2)N(2))] complex and comparison with the Laplaza-Cummins [Mo{N(R)Ar}(3)] and Schrock [Mo(N(3)N)] systems.

The reaction profile of N(2) with Fryzuk's [Nb(P(2)N(2))] (P(2)N(2)=PhP(CH(2)SiMe(2)NSiMe(2)CH(2))(2)PPh) complex is explored by density functional calculations on the model [Nb(PH(3))(2)(NH(2))(2)] system. The effects of ligand constraints, coordination number, metal and ligand donor atom on the reaction energetics are examined and compared to the analogous reactions of N(2) with the three-coordinate Laplaza-Cummins [Mo{N(R)Ar}(3)] and four-coordinate Schrock [Mo(N(3)N)] (N(3)N=[(RNCH(2)CH(2))(3)N](3-)) systems. When the model system is constrained to reflect the geometry of the P(2)N(2) macrocycle, the N--N bond cleavage step, via a N(2)-bridged dimer intermediate, is calculated to be endothermic by 345 kJ mol(-1). In comparison, formation of the single-N-bridged species is calculated to be exothermic by 119 kJ mol(-1), and consequently is the thermodynamically favoured product, in agreement with experiment. The orientation of the amide and phosphine ligands has a significant effect on the overall reaction enthalpy and also the N--N bond cleavage step. When the ligand constraints are relaxed, the overall reaction enthalpy increases by 240 kJ mol(-1), but the N(2) cleavage step remains endothermic by 35 kJ mol(-1). Changing the phosphine ligands to amine donors has a dramatic effect, increasing the overall reaction exothermicity by 190 kJ mol(-1) and that of the N--N bond cleavage step by 85 kJ mol(-1), making it a favourable process. Replacing Nb(II) with Mo(III) has the opposite effect, resulting in a reduction in the overall reaction exothermicity by over 160 kJ mol(-1). The reaction profile for the model [Nb(P(2)N(2))] system is compared to those calculated for the model Laplaza and Cummins [Mo{N(R)Ar}(3)] and Schrock [Mo(N(3)N)] systems. For both [Mo(N(3)N)] and [Nb(P(2)N(2))], the intermediate dimer is calculated to lie lower in energy than the products, although the final N-N cleavage step is much less endothermic for [Mo(N(3)N)]. In contrast, every step of the reaction is favourable and the overall exothermicity is greatest for [Mo{N(R)Ar}(3)], and therefore this system is predicted to be most suitable for dinitrogen cleavage.

Oxidative dehydrogenation of an amine group of a macrocyclic ligand in the coordination sphere of a Cu(II) complex.

The spontaneous oxidation of an amine group to an imine has been observed experimentally in an octa-aza macrocyclic dinucleating ligand LH(4) coordinated to Cu(II). The reaction is bimolecular and spontaneous in which amine groups of one macrocycle are oxidised and the Cu(II) centres of a second macrocyclic complex are reduced. No additional oxidating or external base agents are required. DFT calculations are carried out to compare the reaction with that recently reported for a ligand coordinated to an Fe(III) centre, but which requires an external base as proton acceptor. The computational results show that the copper and iron catalysed amine to imine reactions proceed via different mechanisms.

Optimizing small molecule activation and cleavage in three-coordinate M[N(R)Ar]3 complexes.

The sterically hindered, three-coordinate metal systems M[N(R)Ar]3 (R = tBu, iPr; Ar = 3,5-C6H3Me2) are known to bind and activate a number of fundamental diatomic molecules via a [Ar(R)N]3M-L-L-M[N(R)Ar]3 dimer intermediate. To predict which metals are most suitable for activating and cleaving small molecules such as N(2), NO, CO, and CN(-), the M-L bond energies in the L-M(NH2)3 (L = O, N, C) model complexes were calculated for a wide range of metals, oxidation states, and dn (n = 2-6) configurations. The strongest M-O, M-N, and M-C bonds occurred for the d2, d3, and d4 metals, respectively, and for these d(n) configurations, the M-C and M-O bonds were calculated to be stronger than the M-N bonds. For isoelectronic metals, the bond strengths were found to increase both down a group and to the left of a period. Both the calculated N-N bond lengths and activation barriers for N2 bond cleavage in the (H2N)3M-N-N-M(NH2)3 intermediate dimers were shown to follow the trends in the M-N bond energies. The three-coordinate complexes of Ta(II), W(III), and Nb(II) are predicted to deliver more favorable N2 cleavage reactions than the experimentally known Mo(III) system and the Re(III)Ta(III) dimer, [Ar(R)N]3Re-CO-Ta[N(R)Ar]3, is thermodynamically best suited for cleaving CO.