Hydrogen bonding patterns and C-H...π interactions in the structure of the antiparkinsonian drug (R)-rasagiline mesylate determined using laboratory and synchrotron X-ray powder diffraction data.

The structure of (R)-rasagiline mesylate [(R)-RasH+·Mes-], an active pharmaceutical ingredient used to treat Parkinson's disease, is presented. The structure was determined from laboratory and synchrotron powder diffraction data, refined using the Rietveld method, and validated and optimized using dispersion-corrected DFT calculations. The unit-cell parameters obtained in both experiments are in good agreement and the refinement with both datasets converged to good agreement factors. The final parameters obtained from laboratory data were a = 5.4905 (8), b = 6.536 (2), c = 38.953 (3) Å, V = 1398.0 (4) Å3 and from synchrotron powder data were a = 5.487530 (10) Å, b = 6.528939 (12) Å, c = 38.94313 (9) Å, V = 1395.245 (5) Å3 with Z = 4 and space group P212121. Preferred orientation was properly accounted for using the synchrotron radiation data, leading to a March-Dollase parameter of 1.140 (1) instead of the 0.642 (1) value obtained from laboratory data. In the structure, (R)-RasH+ moieties form layers parallel to the ab plane connected by mesylate ions through N-H...O and C-H...O hydrogen bonds. These layers stack along the c axis and are further connected by C-H...π interactions. Hirshfeld surface analysis and fingerprint plot calculations indicate that the main interactions are: H...H (50.9%), H...C/C...H (27.1%) and H...O/O...H (21.1%).

Foreword to the special virtual issue on Modern approaches and tools for teaching crystallography.

A compilation of articles with a strong teaching element published since 2018 is presented alongside an overview of the articles in the special issue on this topic.

Crystal structure from X-ray powder diffraction data, DFT-D calculation, Hirshfeld surface analysis, and energy frameworks of (RS)-trichlorme-thia-zide.

The structure of racemic (RS)-trichlorme-thia-zide [systematic name: (RS)-6-chloro-3-(di-chloro-meth-yl)-1,1-dioxo-3,4-di-hydro-2H-1λ6,2,4-benzo-thia-di-azine-7-sulfonamide], C8H8Cl3N3O4S2 (RS-TCMZ), a diuretic drug used in the treatment of oedema and hypertension, was determined from laboratory X-ray powder diffraction data using DASH [David et al. (2006 ▸). J. Appl. Cryst. 39, 910-915.], refined by the Rietveld method with TOPAS-Academic [Coelho (2018 ▸). J. Appl. Cryst. 51, 210-218], and optimized using DFT-D calculations. The extended structure consists of head-to-tail dimers connected by π-π inter-actions which, in turn, are connected by C-Cl⋯π inter-actions. They form chains propagating along [101], further connected by N-H⋯O hydrogen bonds to produce layers parallel to the ac plane that stack along the b-axis direction, connected by additional N-H⋯O hydrogen bonds. The Hirshfeld surface analysis indicates a major contribution of H⋯O and H⋯Cl inter-actions (32.2 and 21.7%, respectively). Energy framework calculations confirm the major contribution of electrostatic inter-actions (E elec) to the total energy (E tot). A comparison with the structure of S-TCMZ is also presented.

Synthesis, crystal structure, Hirshfeld surface analysis and energy framework calculations of trans-3,7,9,9-tetra-methyl-10-(prop-2-yn-1-yl)-1,2,3,4,4a,9,9a,10-octa-hydro-acridine.

The title heterocyclic compound, C20H27N, has been prepared in good yield (72%) via a BiCl3-catalyzed cationic Povarov reaction between N-propargyl-4-methyl-aniline and (±)-citronellal. The X-ray single-crystal study indicates that the structure consists of mol-ecules connected by C-H⋯π contacts to produce chains, which pack in a sandwich-herringbone fashion along the b-axis direction. Hirshfeld surface analysis indicates that H⋯H inter-actions dominate by contributing 79.1% to the total surface. Energy frameworks and DFT calculations indicate a major contribution of dispersive forces to the total inter-action energy.

NMR elucidation and crystal structure analysis of 1-hydroxy-3, 6-dimethoxy-8-methyl-9h-xanthen-9-one (lichexanthone) isolated from Vismia baccifera (Guttiferae) / Elucidación por RMN y análisis de la estructura cristalina de 1-hidroxi-3,6-dimetox1-8-methil-9h-xanten-9-ona (lichexanthone)

In the present investigation the structural analysis of 1-hydroxy-3,6-dimethoxy-8-methyl-9h-xanthen-9-one (lichexanthone) isolated from Vismia baccifera var. dealbata collected in Mérida-Venezuela, was established by NMR (1H and 13C), mass spectrometry and single crystal X-ray diffraction. Lichexanthone crystallizes in the monoclinic system, space group P21/c (No 14) with unit cell parameters a = 11.6405(5) Å; b = 7.5444(3) Å; c = 15.2341(6) Å; = 102.280(1)°; V = 1307.26(9) Å3; Z = 4. The structure refinement converged to R = 0.0397, wR2 = 0.1076, S = 1.04. Lichexanthone had been isolated before from Parmotrema sp and Ruprechtia tangarana (Polygonaceae). However, to the best of our knowledge, this is the first report of this compound obtained from V. baccifera var. dealbata (Guttiferae).

En la presente investigación el análisis estructural de 1-hidroxi-3,6-dimetoxi-8-metil-9h-xanten-9-ona (lichexanthone) aislada de Vismia baccifera var. dealbata colectada en Mérida-Venezuela, fue determinado por RMN (1H y 13C), espectrometría de masas y difracción de rayos X. La lichexanthona cristaliza en un sistema monoclínico con un grupo espacial P21/c (No 14) y parámetros de celda de a = 11.6405 (5) Å; b = 7.5444 (3) Å; c = 15.2341 (6) Å; = 102.280(1)°; V = 1307.26(9) Å3; Z = 4. El refinamiento de la estructura convergió a los valores de R = 0.0397, wR2 = 0.1076, S = 1.04. La lichexanthona ha sido aislada de Parmotrema sp y Ruprechtia tangarana (Polygonaceae). Sin embargo, para nuestro conocimiento, esta es la primera vez que se reporta el aislamiento de este compuesto en la especie V. baccifera var. dealbata (Guttiferae).

Supramolecular isomerism in multivalent metal-templated assemblies with topochemical influence in the regioselective synthesis of tetrakis(2-pyridyl)cyclobutane isomers.

An unprecedented example of supramolecular isomerism based on 2D hydrogen-bonded multi-component networks that leads to the preparation of different photoproducts via a topochemical transformation is reported.

cis-Dichloro[tris(diphenylphosphinoethyl)amine]ruthenium(II)-chloroform-water (1/2.5/1).

In the title compound, [RuCl(2)(C(42)H(42)NP(3))] x 2.5CHCl(3) x H(2)O, the Ru atom is six-coordinated, to one tetradentate tris(diphenylphosphinoethyl)amine ligand and two Cl atoms, in a distorted octahedral arrangement. Molecules of chloroform and water stabilize the framework through intermolecular hydrogen bonds.