Graph-based abstractive biomedical text summarization.

Summarization is the process of compressing a text to obtain its important informative parts. In recent years, various methods have been presented to extract important parts of textual documents to present them in a summarized form. The first challenge of these methods is to detect the concepts that well convey the main topic of the text and extract sentences that better describe these essential concepts. The second challenge is the correct interpretation of the essential concepts to generate new paraphrased sentences such that they are not exactly the same as the sentences in the main text. The first challenge has been addressed by many researchers. However, the second one is still in progress. In this study, we focus on the abstractive summarization of biomedical documents. In this regard, for the first challenge, a new method is presented based on the graph generation and frequent itemset mining for generating extractive summaries by considering the concepts within the biomedical documents. Then, to address the second challenge, a transfer learning-based method is used to generate abstractive summarizations from extractive summaries. The efficiency of the proposed solution has been evaluated by conducting several experiments over BioMed Central and NLM's PubMed datasets. The obtained results show that the proposed approach admits a better interpretation of the main concepts and sentences of biomedical documents for the abstractive summarization by obtaining the overall ROUGE of 59.60%, which, on average, is 17% better than state-of-the-art summarization techniques. The source code, datasets, and results are available in GitHub1.

Tough and deformable glasses with bioinspired cross-ply architectures.

Glasses are optically transparent, hard materials that have been in sustained demand and usage in architectural windows, optical devices, electronics and solar panels. Despite their outstanding optical qualities and durability, their brittleness and low resistance to impact still limits wider applications. Here we present new laminated glass designs that contain toughening cross-ply architectures inspired from fish scales and arthropod cuticles. This seemingly minor enrichment completely transforms the way laminated glass deforms and fractures, and it turns a traditionally brittle material into a stretchy and tough material with little impact on surface hardness and optical quality. Large ply rotation propagates over large volumes, and localization is delayed in tension, even if a strain softening interlayer is used, in a remarkable mechanism which is generated by the kinematics of the plies and geometrical hardening. Compared to traditional laminated glass which degrades significantly in performance when damaged, our cross-ply architecture glass is damage-tolerant and 50 times tougher in energy terms. STATEMENT OF SIGNIFICANCE: Despite the outstanding optical qualities and durability of glass, its brittleness and low resistance to impact still limits its wider application. Here we present new laminated glass designs that contain toughening cross-ply architectures inspired from fish scales and arthropod cuticles. Enriching laminated designs with crossplies completely transforms the material deforms and fractures, and turns a traditionally brittle material into a stretchy and tough material - with little impact on surface hardness and optical quality. Large ply rotation propagates over large volumes and localization is delayed in tension because of a remarkable and unexpected geometrical hardening effect. Compared to traditional laminated glass which degrades significantly in performance when damaged, our cross-ply architecture glass is damage-tolerant and it is 50 times tougher in energy terms. Our glass-based, transparent material is highly innovative and it is the first of its kind. We believe it will have impact in broad range of applications in construction, coatings, chemical engineering, electronics, photovoltaics.

Strain rate hardening: a hidden but critical mechanism for biological composites?

Natural materials such as nacre, bone, collagen and spider silk boast unusual combinations of stiffness, strength and toughness. Behind this performance is a staggered microstructure, which consists of stiff and elongated inclusions embedded in a softer and more deformable matrix. The micromechanics of deformation and failure associated with this microstructure are now well understood at the "unit cell" level, the smallest representative volume for this type of material. However, these mechanisms only translate to high performance if they propagate throughout large volumes, an important condition which is often overlooked. Here we present, for the first time, a model which captures the conditions for either spreading of deformations or localization, which determines whether a staggered composite is brittle or deformable at the macroscale. The macroscopic failure strain for the material was calculated as function of the viscoplastic properties of the interfaces and the severity of the defect. As expected, larger strains at failure can be achieved when smaller defects are present within the material, or with more strain hardening at the interface. The model also shows that strain rate hardening is a powerful source of large deformations for the material as well, a result we confirmed and validated with tensile experiments on glass-polydimethylsiloxane (PDMS) nacre-like staggered composites. An important implication is that natural materials, largely made of rate-dependent materials, could rely on strain rate hardening to tolerate initial defects and damage to maintain their functionality. Strain rate hardening could also be harnessed and optimized in bio-inspired composites in order to maximize their overall performance.

Fabrication, testing and modeling of a new flexible armor inspired from natural fish scales and osteoderms.

Crocodiles, armadillo, turtles, fish and many other animal species have evolved flexible armored skins in the form of hard scales or osteoderms, which can be described as hard plates of finite size embedded in softer tissues. The individual hard segments provide protection from predators, while the relative motion of these segments provides the flexibility required for efficient locomotion. In this work, we duplicated these broad concepts in a bio-inspired segmented armor. Hexagonal segments of well-defined size and shape were carved within a thin glass plate using laser engraving. The engraved plate was then placed on a soft substrate which simulated soft tissues, and then punctured with a sharp needle mounted on a miniature loading stage. The resistance of our segmented armor was significantly higher when smaller hexagons were used, and our bio-inspired segmented glass displayed an increase in puncture resistance of up to 70% compared to a continuous plate of glass of the same thickness. Detailed structural analyses aided by finite elements revealed that this extraordinary improvement is due to the reduced span of individual segments, which decreases flexural stresses and delays fracture. This effect can however only be achieved if the plates are at least 1000 stiffer than the underlying substrate, which is the case for natural armor systems. Our bio-inspired system also displayed many of the attributes of natural armors: flexible, robust with 'multi-hit' capabilities. This new segmented glass therefore suggests interesting bio-inspired strategies and mechanisms which could be systematically exploited in high-performance flexible armors. This study also provides new insights and a better understanding of the mechanics of natural armors such as scales and osteoderms.

The weak interfaces within tough natural composites: experiments on three types of nacre.

Mineralization is a typical strategy used in natural materials to achieve high stiffness and hardness for structural functions such as skeletal support, protection or predation. High mineral content generally leads to brittleness, yet natural materials such as bone, mollusk shells or glass sponge achieve relatively high toughness considering the weakness of their constituents through intricate microstructures. In particular, nanometers thick organic interfaces organized in micro-architectures play a key role in providing toughness by various processes including crack deflection, crack bridging or energy dissipation. While these interfaces are critical in these materials, their composition, structure and mechanics is often poorly understood. In this work we focus on nacre, one of the most impressive hard biological materials in terms of toughness. We performed interfacial fracture tests on chevron notched nacre samples from three different species: red abalone, top shell and pearl oyster. We found that the intrinsic toughness of the interfaces is indeed found to be extremely low, in the order of the toughness of the mineral inclusions themselves. Such low toughness is required for the cracks to follow the interfaces, and to deflect and circumvent the mineral tablets. This result highlights the efficacy of toughening mechanisms in natural materials, turning low-toughness inclusions and interfaces into high-performance composites. We found that top shell nacre displayed the highest interfacial toughness, because of higher surface roughness and a more resilient organic material, and also through extrinsic toughening mechanisms including crack deflection, crack bridging and process zone. In the context of biomimetics, the main implication of this finding is that the interface in nacre-like composite does not need to be tough; the extensibility or ductility of the interfaces may be more important than their strength and toughness to produce toughness at the macroscale.

An improved failure criterion for biological and engineered staggered composites.

High-performance biological materials such as nacre, spider silk or bone have evolved a staggered microstructure consisting of stiff and strong elongated inclusions aligned with the direction of loading. This structure leads to useful combinations of stiffness, strength and toughness, and it is therefore increasingly mimicked in bio-inspired composites. The performance of staggered composites can be tuned; for example, their mechanical properties increase when the overlap between the inclusions is increased. However, larger overlaps may lead to excessive tensile stress and fracture of the inclusions themselves, a highly detrimental failure mode. Fracture of the inclusions has so far only been predicted using highly simplified models, which hinder our ability to properly design and optimize engineered staggered composites. In this work, we develop a new failure criterion that takes into account the complex stress field within the inclusions as well as initial defects. The model leads to an 'optimum criterion' for cases where the shear tractions on the inclusions is uniform, and a 'conservative' criterion for which the tractions are modelled as point forces at the ends of the overlap regions. The criterion can therefore be applied for a wide array of material behaviour at the interface, even if the details of the shear load transfer is not known. The new criterion is validated with experiments on staggered structures made of millimetre-thick alumina tablets, and by comparison with data on nacre. Formulated in a non-dimensional form, our new criterion can be applied on a wide variety of engineered staggered composites at any length scale. It also reveals new design guidelines, for example high aspect ratio inclusions with weak interfaces are preferable over inclusions with low aspect ratio and stronger interfaces. Together with existing models, this new criterion will lead to optimal designs that harness the full potential of bio-inspired staggered composites.