Deep proteome profiling of sera from never-smoked lung cancer patients.

Previous studies on the serum proteome are hampered by the huge dynamic range of concentration of different protein species. The use of Equalizer Beads coupled with a combinatorial library of ligands has been shown to allow access to many low-abundance proteins or polypeptides undetectable by classical analytical methods. This study focused on never-smoked lung cancer, which is considered to be more homogeneous and distinct from smoking-related cases both clinically and biologically. Serum samples obtained from 42 never-smoked lung cancer patients (28 patients with active untreated disease and 14 patients with tumor resected) were compared with those from 30 normal control subjects using the pioneering Equalizer Beads technology followed by subsequent analysis by surface-enhanced laser desorption/ionization time-of-flight mass spectrometry (SELDI-TOF-MS). Eighty-five biomarkers were significantly different between lung cancer and normal control. The application of classification algorithms based on significant biomarkers achieved good accuracy of 91.7%, 80% and 87.5% in class-prediction with respect to presence or absence of disease, subsequent development of metastasis and length of survival (longer or shorter than median) respectively. Support vector machine (SVM) performed best overall. We have proved the feasibility and convenience of using the Equalizer Beads technology to study the deep proteome of the sera of lung cancer patients in a rapid and high-throughput fashion, and which enables detection of low abundance polypeptides/proteins biomarkers. Coupling with classification algorithms, the technologies will be clinically useful for diagnosis and prediction of prognosis in lung cancer.

Atom-molecule interactions on transition metal surfaces: a DFT Study of CO and several atoms on Rh(100), Pd(100) and Ir(100).

Density functional theory (DFT) calculations have been performed to determine the interaction energy between a CO probe molecule and all atoms from the first three rows of the periodic table coadsorbed on Rh(100), Pd(100) and Ir(100) metal surfaces. Varying the coverage of CO or the coadsorbed atom proved to have a profound effect on the strength of the interaction energy. The general trend, however, is the same in all cases: the interaction energy becomes more repulsive when moving towards the right along a row of elements, and reaches a maximum somewhere in the middle of a row of elements. The absolute value of the interaction energy between an atom-CO pair ranges from about -0.40 eV (39 kJ mol(-1)) attraction to +0.70 eV (68 kJ mol(-1)) repulsion, depending on the coadsorbate, the metal and the coverage. The general trend in interaction energies seems to be a common characteristic for several transition metals.

Acetylene decomposition on Rh(100): theory and experiment.

The decomposition of acetylene on a Rh(100) single crystal was studied by a combination of experimental techniques [static secondary ion mass spectrometry (SSIMS), temperature-programmed desorption (TPD), and low-energy electron diffraction (LEED)] to gain insight into the reaction pathway and the nature of the reaction intermediates. The experimental techniques were combined with a computational approach using density functional theory (DFT). Acetylene adsorbs irreversibly on the Rh(100) surface and eventually decomposes to atomic carbon and gas-phase hydrogen. The combination of experimental and computational results enabled us to determine the most likely reaction pathway for the decomposition process.

The influence of carbon on the adsorption of CO on a Rh(100) single crystal.

The influence of carbon on the adsorption of CO from a Rh(100) single crystal has been studied by a combination of experimental techniques: Temperature Programmed Desorption (TPD), Low Energy Electron Diffraction (LEED), and High Resolution Electron Energy Loss Spectroscopy (HREELS). These experimental techniques were combined with a computational approach using Density Functional Theory (DFT). Using this combination of techniques, we have shown that surface carbon greatly influences adsorbed CO and we have determined the exact magnitude of this interaction. Furthermore, we have demonstrated that carbon does not remain fully on the surface; at higher coverage it diffuses partially to subsurface positions. The presence of these subsurface species significantly influences the adsorbates on the surface.

The influence of promoters and poisons on carbon monoxide adsorption on Rh(100): a DFT study.

Density functional theory calculations were performed to determine the pairwise lateral interaction energies between carbon monoxide and coadsorbed elements from the first three rows of the periodic table on a Rh(100) surface. The atoms were placed in a c(2x2) arrangement of fourfold hollow sites and the carbon monoxide probe molecule in a p(2x2) arrangement, so that each CO molecule had four atoms as nearest neighbours. The alkali atoms show an attractive interaction with CO while the other atoms show a repulsive interaction. For second-row elements the maximum repulsion is at nitrogen and for third-row elements at sulphur. Attempts to correlate the interaction energies with properties of the system, such as electronegativity, distances, or change in work function, failed, which implies that each combination of adsorbates needs to be calculated separately.

Sun protection practices for children: knowledge, attitudes, and parent behaviors.

OBJECTIVE: To examine the frequency with which sun protection is used by parents for their children. DESIGN AND SETTING: Descriptive survey conducted at a university medical clinic in Florida. PARTICIPANTS: Parents of children aged 1 to 16 years were approached in the waiting area, and 77 of 100 were successfully interviewed. MAIN OUTCOME MEASURES: Parents' self-reported use of sun protection measures for their children and their attitudes and beliefs about sun protection. RESULTS: Fewer than half of respondents (43%) reported regularly using sun protection for their child. Regular use of sun protection was reported more frequently by female caretakers and those with more favorable attitudes regarding sun protection use. Sunscreen was the most frequently used measure, and preventing sunburn was the primary reason for using sun protection. Respondents held several unfavorable sun protection attitudes, including the belief that sun exposure was healthy, that children looked better with a tan, and that it was okay to stay out in the sun longer if the child wore sunscreen. CONCLUSIONS: Regular use of sun protection for children is infrequent and consists primarily of applying sunscreen rather than methods that reduce sun exposure. Parents primarily use sunscreen to prevent sunburn and may increase their children's overall sun exposure as a result.

Anti-oxidant/pro-oxidant reactions of vitamin K.

Experiments were designed to measure O2 consumption caused by the oxidation of linoleic acid. These experiments show that vitamin K has antioxidant activity and that the reduction in linoleic acid oxidation is directly dependent upon vitamin K concentration. Conversely, vitamin K hydroquinone enhances linoleic acid oxidation in the absence of iron catalyst, again in a concentration dependent manner. At equilmolar concentrations vitamin K is about 80% as effective as vitamin E as an antioxidant. Vitamin E inhibits the oxidation of linoleic acid catalyzed by vitamin K hydroquinone. Vitamin E also strongly inhibits vitamin K dependent formation of both vitamin K epoxide and gamma-carboxyglutamic acid (gla). The significance of these observations to vitamin K action in vivo is discussed.