Evolution of the scattering properties of phytoplankton cells from flow cytometry measurements.

After the exponential growth phase, variability in the scattering efficiency of phytoplankton cells over their complete life cycle is not well characterised. Bulk measurements are impacted by senescent cells and detritrus. Thus the analysis of the evolution of the optical properties thanks to their morphological and/or intra-cellular variations remains poorly studied. Using the Cytosense flow cytometer (CytoBuoy b.v., NL), the temporal course of the forward and sideward efficiencies of two phytoplankton species (Thalassiosira pseudonana and Chlamydomonas concordia) were analyzed during a complete life-cycle. These two species differ considerably from a morphological point of view. Over the whole experiment, the forward and sideward efficiencies of Thalassiosira pseudonana were, on average, respectively 2.2 and 1.6 times higher than the efficiencies of Chlamydomonas concordia. Large intra-species variability of the efficiencies were observed over the life cycle of the considered species. It highlights the importance of considering the optical properties of phytoplankton cells as a function of the population growth stage of the considered species. Furthermore, flow cytometry measurements were combined with radiative transfer simulations and biogeochemical and optical measurements. Results showed that the real refractive index of the chloroplast is a key parameter driving the sideward signal and that a simplistic two-layered model (cytoplasm-chloroplast) seems particularly appropriate to represent the phytoplankton cells.

Determination of backscattering cross section of individual particles from cytometric measurements: a new methodology.

A methodology is developed to derive the backscattering cross section of individual particles as measured with the CytoSense (CytoBuoy b.v., NL). This in situ flow cytometer detects light scatter in forward and sideward directions and fluorescence in various spectral bands for a wide range of particles. First, the weighting functions are determined for the forward and sideward detectors to take into account their instrumental response as a function of the scattering angle. The CytoSense values are converted into forward and sideward scattering cross sections. The CytoSense estimates of uniform polystyrene microspheres from 1 to 90 µm are compared with Mie computations. The mean absolute relative differences ΔE are around 33.7% and 23.9% for forward and sideward scattering, respectively. Then, a theoretical relationship is developed to convert sideward scattering into backscattering cross section, from a synthetic database of 495,900 simulations including homogeneous and multi-layered spheres. The relationship follows a power law with a coefficient of determination of 0.95. To test the methodology, a laboratory experiment is carried out on a suspension of silica beads to compare backscattering cross section as measured by the WET Labs ECO-BB9 and derived from CytoSense. Relative differences are between 35% and 60%. They are of the same order of magnitude as the instrumental variability. Differences can be partly explained by the fact that the two instruments do not measure exactly the same parameter: the cross section of individual particles for the CytoSense and the bulk cross section for the ECO-BB9.

CDOM-DOC relationship in contrasted coastal waters: implication for DOC retrieval from ocean color remote sensing observation.

Increasing our knowledge on dissolved organic carbon (DOC) spatio-temporal distribution in the coastal ocean represents a crucial challenge for better understanding the role of these ecosystems in the global oceanic carbon cycle. The assessment of DOC concentration from the absorption properties of the colored part of the dissolved organic matter (a(cdom)) was investigated from an extensive data set covering a variety of coastal environments. Our results confirmed that variation in the a(cdom)(412) to DOC ratio (a*(cdom)(412)) can be depicted from the CDOM spectral slope in the UV domain (S(275-295)). They also evidenced that regional first order variation in both a*(cdom)(412) and S(275-295) are highly correlated to variation in a(cdom)(412). From these observations, generalized relationships for estimating a*(cdom)(412) from S(275-295) or a(cdom)(412) were parameterized from our development sites (N = 158; English Channel, French Guiana, Hai Phong Bay) and tested against an independent data set covering others coastal regions (N = 223; French Polynesia, Rhone River estuary, Gulf of Maine, Chesapeake Bay, Southern Middle Atlantic Bight) demonstrating the possibility to derive DOC estimates from in situ CDOM optical properties with an average accuracy of ~16% over very contrasted coastal environments (with DOC ranging from 50 to 250 µmol.L(-1)). The applicability of these generalized approaches was evaluated in the context of ocean color remote sensing observation emphasizing the limits of S(275-295)-based formulations and the potential for a(cdom)-based approaches to represent a compelling alternative for assessing synoptic DOC distribution.

Assessment of the colored dissolved organic matter in coastal waters from ocean color remote sensing.

Knowledge on absorption by colored dissolved organic matter, a(cdom), spatio-temporal variability in coastal areas is of fundamental importance in many field of researches related to biogeochemical cycles studies, coastal areas management, as well as land and water interactions in the coastal domain. A new method, based on the theoretical link between the vertical attenuation coefficient, K(d), and the absorption coefficient, has been developed to assess a(cdom). This method, confirmed from radiative transfer simulations and in situ measurements, and tested on an independent in situ data set (N = 126), allows a(cdom) to be assessed with a Mean Relative Absolute Difference, MRAD, of 33% over two order of magnitude (from 0.01 to 1.16 m(-1)). In the frame of ocean color observation, K(d) is not directly measured but estimated from the remote sensing reflectance, R(rs). Based on 109 satellite (SeaWiFS) and in situ coincident (i.e. match-up) data points a(cdom) is retrieved with a MRAD value of 37%. This simple model generally presents slightly better performances than recently developed empirical or semi-analytical algorithms.

Effect of inherent optical properties variability on the chlorophyll retrieval from ocean color remote sensing: an in situ approach.

The impact of the inherent optical properties (IOP) variability on the chlorophyll, Chl, retrieval from ocean color remote sensing algorithms is analyzed from an in situ data set covering a large dynamic range. The effect of the variability of the specific phytoplankton absorption coefficient, a(phy)/Chl, specific particulate backscattering coefficient, b(bp)/Chl, and colored detrital matter absorption to non-water absorption ratio, a(cdm)/a(nw), on the performance of standard operational algorithms is examined. This study confirms that empirical algorithms are highly dependent on the specifics IOP values (especially b(bp)/Chl and a(cdm)/a(nw)): Chl is over-estimated in waters with specific IOP values higher than averaged values, and vice versa. These results clearly indicate the necessity to account for the influence of the specific IOP variability in Chl retrieval algorithms.

Investigation of the variations in the water leaving polarized reflectance from the POLDER satellite data over two biogeochemical contrasted oceanic areas.

The biogeochemical characterization of marine particles suspended in sea water, is of fundamental importance in many areas of ocean science. Previous studies based on theoretical calculations and field measurements have demonstrated the importance of the use of the polarized light field in the retrieval of the suspended marine particles properties. However, because of the weakness of the water leaving polarized signal and of the limited number of appropriate spatial sensors, such measurements have never been exploited from space. Here we show that the marine polarized remote sensing reflectance, as detected from the POLarization and Directionality of the Earth's Reflectances (POLDER) sensor, can be measured from space over bright waters and in absence of aerosols. This feasibility study is carried out over two oceanic areas characterized by different nature of the bulk particulate assemblage: the Barents sea during an intense coccolithophore bloom, and the Rio de la Plata estuary waters dominated by suspended sediments. The retrieved absolute values of the degree of polarization, P, its angular pattern, and its behavior with the scattering level are consistent with theory and field measurements. Radiative transfer simulations confirm the sensitivity of the POLDER-2 P values to the nature of the particulate assemblage. These preliminary results are very promising for the assessment of the bulk particle composition from remote sensing of the polarized signal, at least over highly scattering waters.