Methods for characterization of protein aggregates.

Physicochemical characterization of protein aggregates is important on one hand, due to its large impact in understanding many diseases for which formation of protein aggregates is one of the pathological hallmarks. On the other hand, recently it has been observed that bacterial inclusion bodies (IBs) are also highly pure proteinaceous aggregates of a few hundred nanometers produced by recombinant bacteria supporting the biological activities of the embedded polypeptides. From this fact arises a wide spectrum of uses of IBs as functional and biocompatible materials upon convenient engineering but very few is known about their physicochemical properties. In this chapter we present methods for the characterization of protein aggregates as particulate materials relevant to their physicochemical and nanoscale properties. Specifically, we describe the use of infrared spectroscopy (IR) for the determination of the secondary structure, dynamic light scattering (DLS) for sizing, nanosight for sizing and counting, and Z-potential measurements for the determination of colloidal stability. To study their morphology we present the use of atomic force microscopy (AFM). Cryo-transmission electron microscopy will be used for the determination of the internal structuration. Moreover, wettability and nanomechanical characterization can be performed using contact angle (CA) and force spectroscopic AFM measurements of the proteinaceous nanoparticles, respectively. The physical principles of the methods are briefly described and examples of data for real samples and how that data is interpreted are given to help clarify capabilities of each technique.

Influence of the group 11 metal on the emissive properties of complexes [M{(PR2)2C2B9H10}L].

The metal atoms in group 11 complexes [M{(PR2)2C2B9H10}L] [R = Ph, (i)Pr; L = tertiary phosphane; M = Au, Ag, Cu] play an important role in the emissive properties of these compounds. The influence of the metal follows the order Au ≫ Ag ≥ Cu. The three-coordinated complexes are obtained from the reaction of [AuClL], [Ag(OTf)L], or [Cu(NO3)(PPh3)2] with the closo carborane diphosphane in refluxing ethanol. For L = PPh2NHPy, cleavage of the P-N bond and the formation of the monophosphane PPh2OEt are observed, depending on the metal and the nido carborane diphosphane substituent ((i)Pr or Ph).

PDMS based photonic lab-on-a-chip for the selective optical detection of heavy metal ions.

The selective absorbance detection of mercury(II) (Hg(2+)) and lead(II) (Pb(2+)) ions using ferrocene-based colorimetric ligands and miniaturized multiple internal reflection (MIR) systems implemented in a low-cost photonic lab on a chip (PhLoC) is reported. The detection principle is based on the formation of selective stable complexes between the heavy metal ion and the corresponding ligand. This interaction modulates the ligand spectrum by giving rise to new absorbance bands or wavelength shifting of the existing ones. A comparative study for the detection of Hg(2+) was carried out with two MIR-based PhLoC systems showing optical path lengths (OPLs) of 0.64 cm and 1.42 cm as well as a standard cuvette (1.00 cm OPL). Acetonitrile solutions containing the corresponding ligand and increasing concentrations of the heavy metal ion were pumped inside the systems and the absorbance in the visible region of the spectra was recorded. The optical behaviour of all the tested systems followed the expected Beer-Lambert law. Thus, the best results were achieved with the one with the longest OPL, which showed a linear behaviour in a concentration range of 1 µM-90 µM Hg(2+), a sensitivity of 5.6 × 10(-3) A.U. µM(-1) and a LOD of 2.59 µM (0.49 ppm), this being 1.7 times lower than that recorded with a standard cuvette, and using a sample/reagent volume around 190 times smaller. This microsystem was also applied for the detection of Pb(2+) and a linear behaviour in a concentration range of 3-100 µM was obtained, and a sensitivity of 9.59 × 10(-4) A.U. µM(-1) and a LOD of 4.19 µM (0.868 ppm) were achieved. Such a simple analytical tool could be implemented in portable instruments for automatic in-field measurements and, considering the minute sample and reagent volume required, would enable the deployment of high throughput environmental analysis of these pollutants and other related hazardous species.

Supramolecular organization of protein-releasing functional amyloids solved in bacterial inclusion bodies.

Slow protein release from amyloidal materials is a molecular platform used by nature to control protein hormone secretion in the endocrine system. The molecular mechanics of the sustained protein release from amyloids remains essentially unexplored. Inclusion bodies (IBs) are natural amyloids that occur as discrete protein nanoparticles in recombinant bacteria. These protein clusters have been recently explored as protein-based functional biomaterials with diverse biomedical applications, and adapted as nanopills to deliver recombinant protein drugs into mammalian cells. Interestingly, the slow protein release from IBs does not significantly affect the particulate organization and morphology of the material, suggesting the occurrence of a tight scaffold. Here, we have determined, by using a combined set of analytical approaches, a sponge-like supramolecular organization of IBs combining differently folded protein versions (amyloid and native-like), which supports both mechanical stability and sustained protein delivery. Apart from offering structural clues about how amyloid materials release their monomeric protein components, these findings open exciting possibilities for the tailored development of smart biofunctional materials, adapted to mimic the functions of amyloid-based secretory glands of higher organisms.

Bacterial inclusion bodies: making gold from waste.

Many protein species produced in recombinant bacteria aggregate as insoluble protein clusters named inclusion bodies (IBs). IBs are discarded from further processing or are eventually used as a pure protein source for in vitro refolding. Although usually considered as waste byproducts of protein production, recent insights into the physiology of recombinant bacteria and the molecular architecture of IBs have revealed that these protein particles are unexpected functional materials. In this Opinion article, we present the relevant mechanical properties of IBs and discuss the ways in which they can be explored as biocompatible nanostructured materials, mainly, but not exclusively, in biocatalysis and tissue engineering.

Bioadhesiveness and efficient mechanotransduction stimuli synergistically provided by bacterial inclusion bodies as scaffolds for tissue engineering.

BACKGROUND: Bacterial inclusion bodies (IBs), mechanically stable, submicron protein particles of 50-500 nm dramatically favor mammalian cell spread when used for substrate surface decoration. The mechanisms supporting fast colonization of IB-modified surfaces have not yet been identified. RESULTS: This study provides evidence of mechanotransduction-mediated stimulation of mammalian cell proliferation on IB-decorated surfaces, as observed by the enhanced phosphorylation of the signal-regulated protein kinase and by the dramatic emission of filopodia in the presence of IBs. Interestingly, the results also show that IBs are highly bioadhesive materials, and that mammalian cell expansion on IBs is synergistically supported by both enhanced adhesion and mechanical stimulation of cell division. DISCUSSION: The extent in which these events influence cell growth depends on the particular cell line response but it is also determined by the genetic background of the IB-producing bacteria, thus opening exciting possibilities for the fine tailoring of protein nanoparticle features that are relevant in tissue engineering.

Highly emissive dinuclear complexes [Au2{µ-(PPh2)2C2B9H10}(C6F5)(PR3)] with different gold fragments coordinated to an anionic diphosphine.

Reaction of the yellow-green emitters [Au{(PPh(2))(2)C(2)B(9)H(10)}(PR(3))] with [Au(C(6)F(5))(tht)] affords orange-red emissive gold complexes [Au(2){µ-(PPh(2))(2)C(2)B(9)H(10)}(C(6)F(5))(PR(3))] which contain different neutral (PR(3)) and anionic (C(6)F(5)) auxiliary ligands and an anionic diphosphine. The resulting complexes are among the few reported in which an ortho-carborane diphosphine acts in a bridging mode, and are unique in containing not a closo- (neutral), but a nido-carborane (anionic) cluster. DFT and TDDFT calculations led to the prediction of the origin of the two first singlet-triplet transitions, which is consistent with the experimental results. Although the blue emissive nido-diphosphine plays a key role in the transitions of the three-coordinate precursors and the final dinuclear complexes, it is the environment around the gold centre that controls the emission energy.

Selective picomolar detection of mercury(II) using optical sensors.

The rational design of a mercury(II) ligand consisting in a 1-(4'-oxyphenyl)-4(1'-pyrenyl)-2,3-diaza-1,3-butadiene receptor unit, optimizes the sensitivity and reliability of a SPR sensor by the formation of a well packed SAM over the gold surface. SPR analysis allows detecting mercury(II) concentrations in aqueous systems in the picomolar range, meliorating on three orders of magnitude the EU mercury(II) detection limit in drinkable water.

The nanoscale properties of bacterial inclusion bodies and their effect on mammalian cell proliferation.

The chemical and mechanical properties of bacterial inclusion bodies, produced in different Escherichia coli genetic backgrounds, have been characterized at the nanoscale level. In regard to wild type, DnaK(-) and ClpA(-) strains produce inclusion bodies with distinguishable wettability, stiffness and stiffness distribution within the proteinaceous particle. Furthermore it was possible to observe how cultured mammalian cells respond differentially to inclusion body variants when used as particulate materials to engineer the nanoscale topography, proving that the actual range of referred mechanical properties is sensed and discriminated by biological systems. The data provide evidence of the mechanistic activity of the cellular quality control network and the regulation of the stereospecific packaging of partially folded protein species in bacteria. This inclusion body nanoscale profiling offers possibilities for their fine genetic tuning and the resulting macroscopic effects when applied in biological interfaces.

Protein nanodisk assembling and intracellular trafficking powered by an arginine-rich (R9) peptide.

AIMS: Arginine(R)-rich cationic peptides are powerful tools in drug delivery since, alone or when associated with polyplexes, proteins or chemicals, they confer DNA condensation, membrane translocation and blood-brain barrier crossing abilities. The unusual stability and high in vivo performance of their associated drugs suggest a particulate organization or R(n) complexes, which this study aimed to explore. MATERIALS & METHODS: We have analyzed the particulate organization and biological performance in DNA delivery of a model, R9-containing green fluorescent protein by dynamic light scattering, transmission electron microscopy, atomic force microscopy, single cell confocal microscopy and flow cytometry. RESULTS: A deep nanoscale examination of R9-powered constructs reveals a novel and promising feature of R9, that when fused to a scaffold green fluorescent protein, promote its efficient self-assembling as highly stable, regular disk-shaped nanoparticles of 20 x 3 nm. These constructs are efficiently internalized in mammalian cells and rapidly migrate through the cytoplasm towards the nucleus in a fully bioactive form. Besides, such particulate platforms accommodate, condense and deliver plasmid DNA to the nucleus and promote plasmid-driven transgene expression. CONCLUSION: The architectonic properties of arginine-rich peptides at the nanoscale reveal a new category of protein nanoparticles, namely nanodisks, and provide novel strategic concepts and architectonic tools for the tailored construction of new-generation artificial viruses for gene therapy and drug delivery.

Naked-eye and Selective Detection of Mercury (II) Ions in Mixed Aqueous Media Using a Cellulose-based Support.

A test paper for high-selectivity detecting Hg2+ ions in mixed acetonitrile-watersolutions has been achieved using a bis(ferrocenyl) azine, as chromogenic chemosensormolecule, and a solid cellulose fibre, as a substrate. Depending on the amount of mercuryions in contact with the detecting molecule a spectacular color change in the celluloseindicator is produced, being possible to determine the concentration of Hg2+ ions either bynaked eye or spectroscopically.