Recent advancements in coral health, microbiome interactions and climate change.

Corals are the visible indicators of the disasters induced by global climate change and anthropogenic activities and have become a highly vulnerable ecosystem on the verge of extinction. Multiple stressors could act individually or synergistically which results in small to large scale tissue degradation, reduced coral covers, and makes the corals vulnerable to various diseases. The coralline diseases are like the Chicken pox in humans because they spread hastily throughout the coral ecosystem and can devastate the coral cover formed over centuries in an abbreviated time. The extinction of the entire reef ecosystem will alter the ocean and earth's amalgam of biogeochemical cycles causing a threat to the entire planet. The current manuscript provides an overview of the recent advancement in coral health, microbiome interactions and climate change. Culture dependent and independent approaches in studying the microbiome of corals, the diseases caused by microorganisms, and the reservoirs of coral pathogens are also discussed. Finally, we discuss the possibilities of protecting the coral reefs from diseases through microbiome transplantation and the capabilities of remote sensing in monitoring their health status.

Genomic investigations provide insights into the mechanisms of resilience to heterogeneous habitats of the Indian Ocean in a pelagic fish.

The adaptive genetic variation in response to heterogeneous habitats of the Indian Ocean was investigated in the Indian oil sardine using ddRAD sequencing to understand the subpopulation structure, stock complexity, mechanisms of resilience, and vulnerability in the face of climate change. Samples were collected from different ecoregions of the Indian ocean and ddRAD sequencing was carried out. Population genetic analyses revealed that samples from the Gulf of Oman significantly diverged from other Indian Ocean samples. SNP allele-environment correlation revealed the presence of candidate loci correlated with the environmental variables like annual sea surface temperature, chlorophyll-a, and dissolved oxygen concentration which might represent genomic regions allegedly diverging as a result of local adaptation. Larval dispersal modelling along the southwest coast of India indicated a high dispersal rate. The two major subpopulations (Gulf of Oman and Indian) need to be managed regionally to ensure the preservation of genetic diversity, which is crucial for climatic resilience.

Abundance and characteristics of microplastics in commercially important bottom dwelling finfishes and shellfish of the Vembanad Lake, India.

This paper characterize microplastics (MPs) in the heavily urbanized, brackish water Vembanad Lake (India), focussing on some commercially important bottom-feeding fishes and shellfish (Arius maculatus, Etroplus suratensis, E. maculatus and Villorita sp.). The average abundance of MPs was higher in the water column (872 ± 573 nos./m3) than in finfishes (15 ± 13 particles per fish) and shellfish (23 ± 20 nos./ind.). Fibre was the most abundant MP type in the water and the organisms examined. The size of MPs obtained from finfishes ranged between 0.04 and 4.73 mm (4 ± 3 mm), with a majority of particles being <4 mm. No correlation was found between biological features (e.g. gut length, mouth size) of fishes and the size of MPs in their gut. In Villorita sp., the abundance of MPs was positively correlated with the size of the individuals. Raman spectroscopy confirmed the presence of chlorinated polyvinyl chloride, polyethylene, polypropylene and polyester in the samples.

Signals of selection in the mitogenome provide insights into adaptation mechanisms in heterogeneous habitats in a widely distributed pelagic fish.

Oceans are vast, dynamic, and complex ecosystems characterized by fluctuations in environmental parameters like sea surface temperature (SST), salinity, oxygen availability, and productivity. Environmental variability acts as the driver of organismal evolution and speciation as organisms strive to cope with the challenges. We investigated the evolutionary consequences of heterogeneous environmental conditions on the mitogenome of a widely distributed small pelagic fish of Indian ocean, Indian oil sardine, Sardinella longiceps. Sardines were collected from different eco-regions of the Indian Ocean and selection patterns analyzed in coding and non-coding regions. Signals of diversifying selection were observed in key functional regions involved in OXPHOS indicating OXPHOS gene regulation as the critical factor to meet enhanced energetic demands. A characteristic control region with 38-40 bp tandem repeat units under strong selective pressure as evidenced by sequence conservation and low free energy values was also observed. These changes were prevalent in fishes from the South Eastern Arabian Sea (SEAS) followed by the Northern Arabian Sea (NAS) and rare in Bay of Bengal (BoB) populations. Fishes belonging to SEAS exhibited accelerated substitution rate mainly due to the selective pressures to survive in a highly variable oceanic environment characterized by seasonal hypoxia, variable SST, and food availability.

Implications of sea level rise scenarios on land use /land cover classes of the coastal zones of Cochin, India.

Physical responses of the coastal zones in the vicinity of Cochin, India due to sea level rise are investigated based on analysis of inundation scenarios. Quantification of potential habitat loss was made by merging the Land use/Land cover (LU/LC) prepared from the satellite imagery with the digital elevation model. Scenarios were generated for two different rates of sea level rise and responses of changes occurred were made to ascertain the vulnerability and loss in extent. LU/LC classes overlaid on 1 m and 2 m elevation showed that it was mostly covered by vegetation areas followed by water and urban zones. For the sea level rise scenarios of 1 m and 2 m, the total inundation zones were estimated to be 169.11 km(2) and 598.83 km(2) respectively using Geographic Information System (GIS). The losses of urban areas were estimated at 43 km(2) and 187 km(2) for the 1 m and 2 m sea level rise respectively which is alarming information for the most densely populated state of India. Quantitative comparison of other LU/LC classes showed significant changes under each of the inundation scenarios. The results obtained conclusively point that sea level rise scenarios will bring profound effects on the land use and land cover classes as well as on coastal landforms in the study region. Coastal inundation would leave ocean front and inland properties vulnerable. Increase in these water levels would alter the coastal drainage gradients. Reduction in these gradients would increase flooding attributable to rainstorms which could promote salt water intrusion into coastal aquifers and force water tables to rise. Changes in the coastal landforms associated with inundation generate concern in the background that the coastal region may continue to remain vulnerable in the coming decades due to population growth and development pressures.

Hydrographic characterization of southeast Arabian Sea during the wane of southwest monsoon and spring intermonsoon.

Seasonal variation of the hydrography along the southeast Arabian Sea is described using data collected onboard FORV Sagar Sampada in September--October 2003 (later phase of Southwest monsoon, SWM) and March--April 2004 (Spring inter monsoon, SIM). During the later phase of the SWM, upwelling was in the withdrawal phase and the frontal structure was clearer in the northern sections (13 and 15 degrees N lat) indicating strong upwelling in the area. The driving force of upwelling is identified as the combination of alongshore wind stress and remote forcing with a latitudinal variability. Although a more prominent upwelling was found in the north, a maximum surface Chlorophyll-a was found in the south (10 degrees N). During the SIM, the area was characterized by oligotrophic water with relatively high Sea Surface Temperature (>29 degrees C) and low salinity (33.8 to 35.4). During March, the surface hydrography was found to be controlled mainly by the intrusion of low-saline waters from the south, while during September by the high saline water from the north. The presence of various water masses [Arabian Sea High Salinity Water (ASHSW), Persian Gulf Water (PGW), Red Sea Water (RSW)] and their seasonal variations in the region is discussed and their decreasing influence towards the south is noted during both periods of observation. During the SWM, the dynamic topography showed the equator-ward flow of the West India Coastal Current (WICC) at the surface and a pole-ward coastal under current at sub-thermocline depth. During the SIM, surface circulation revealed the WICC flowing pole-ward north of 13 degrees N, but equator-ward flow in the south, with a clockwise circulation around the Lakshadweep High.