Co-infection of Chlamydia psittaci and Tropheryma whipplei: A case report.

BACKGROUND: The co-infection of Chlamydia psittaci (C. psittaci) and Tropheryma whipplei (T. whipplei) is unusual, and the detection of pathogenic microorganisms is particularly important for patients with severe diseases or poor experience in treatment. Early identification of pathogens can significantly improve the prognosis of the patients. Targeted next-generation sequencing (tNGS) is currently widely used in clinical practice for various infectious diseases, including respiratory infections, to achieve early, accurate, and rapid microbial diagnosis. CASE SUMMARY: We report a case of a 40-year-old female patient with a history of contact with parrots who was diagnosed with C. psittaci and T. whipplei infection through bronchial lavage fluid targeted next generation sequencing. After moxifloxacin treatment, the patient's symptoms improved significantly, and the imaging changes were obviously resolved. CONCLUSION: Coinfection with C. psittaci and T. whipplei is not common. In this case, timely and accurate identification of both pathogens was achieved using tNGS. Moreover, the efficacy of monotherapy with moxifloxacin was confirmed.

Advances in the biosynthesis of cyclodipeptide type natural products derived from actinomycetes / 生物工程学报

Cyclodipeptide (CDP) composed of two amino acids is the simplest cyclic peptide. These two amino acids form a typical diketopiperazine (DKP) ring by linking each other with peptide bonds. This characteristic stable ring skeleton is the foundation of CDP to display extensive and excellent bioactivities, which is beneficial for CDPs' pharmaceutical research and development. The natural CDP products are well isolated from actinomycetes. These bacteria can synthesize DKP backbones with nonribosomal peptide synthetase (NRPS) or cyclodipeptide synthase (CDPS). Moreover, actinomycetes could produce a variety of CDPs through different enzymatic modification. The presence of these abundant and diversified catalysis indicates that actinomycetes are promising microbial resource for exploring CDPs. This review summarized the pathways for DKP backbones biosynthesis and their post-modification mechanism in actinomycetes. The aim of this review was to accelerate the genome mining of CDPs and their isolation, purification and structure identification, and to facilitate revealing the biosynthesis mechanism of novel CDPs as well as their synthetic biology design.

Chemical Modification, Characterization, and Activity Changes of Land Plant Polysaccharides: A Review.

Plant polysaccharides are widely found in nature and have a variety of biological activities, including immunomodulatory, antioxidative, and antitumoral. Due to their low toxicity and easy absorption, they are widely used in the health food and pharmaceutical industries. However, low activity hinders the wide application. Chemical modification is an important method to improve plant polysaccharides' physical and chemical properties. Through chemical modification, the antioxidant and immunomodulatory abilities of polysaccharides were significantly improved. Some polysaccharides with poor water solubility also significantly improved their water solubility after modification. Chemical modification of plant polysaccharides has become an important research direction. Research on the modification of plant polysaccharides is currently increasing, but a review of the various modification studies is absent. This paper reviews the research progress of chemical modification (sulfation, phosphorylation, acetylation, selenization, and carboxymethylation modification) of land plant polysaccharides (excluding marine plant polysaccharides and fungi plant polysaccharides) during the period of January 2012-June 2022, including the preparation, characterization, and biological activity of modified polysaccharides. This study will provide a basis for the deep application of land plant polysaccharides in food, nutraceuticals, and pharmaceuticals.

[Improved production of microbial lipids in the two-liquid phase fermentation system].

In the present study, we developed a two-liquid phase fermentation system by adding 1% n-dodecane as oxygen-vector to enhance the microbial lipids productivity of Trichosporon fermentans using cassava starch hydrolysate. Results suggest that the oxygen-vector could alleviate the oxygen shortage in flask fermentation. The cell mass and lipids concentration were 101.2 g/L and 50.28 respectively in 2 L fermenter with the presence of 1% n-dodecane. Additionally, gas chromatography analysis also reveals that the microbial lipids produced by T. fermentans contained a higher percentage of saturated fatty acid in the oxygen-vector case.

Highly heteroselective ring-opening polymerization of racemic lactide initiated by divalent ytterbium complexes bearing amino bis(phenolate) ligands.

Polymerization of racemic lactide initiated by divalent ytterbium complexes supported by either dimethylamino-amino bis(phenolate) or methoxy-amino bis(phenolate) ligands proceeds rapidly at room temperature in a living fashion to give heterotactic polylactide with the racemic enchainment of monomer units P(r) ranging from 0.97-0.99.

Synthesis and molecular structure of piperazidine-bridged bis(phenolate) samarium(II) complex and its reactivity to carbodiimides.

The reaction of Sm[N(TMS)(2)](2)(THF)(2) with H(2)L (L = 1,4-bis(2-hydroxy-3-tert-butyl-5-methyl-benzyl)-piperazidine) afforded [SmL(HMPA)(2)](4)·8THF 2 upon treatment with 2 equivalents of HMPA (hexamethyl phosphoric triamide). X-ray crystallographic analysis of 2 reveals a tetrametallic macrocyclic structure, which represents the first example of a crystal structure of a Sm(II) complex stabilized by heteroatom bridged bis(phenolate) ligands. Reduction of carbodiimides RNCNR (R = (i)Pr and Cy) by [SmL](2)(THF) 1, which was formed in situ by the reaction of Sm[N(TMS)(2)](2)(THF)(2) with H(2)L in THF, yielded the Sm(III) complex with an oxalamidinate ligand [LSm{(N(i)Pr)(2)CC(N(i)Pr)(2)}SmL]·THF 3 for (i)PrNCN(i)Pr and the Sm(III) complex with a diamidocarbene ligand [LSm(µ-CyNCNCy)SmL]·5.5THF 4 for CyNCNCy.

[Isolation of endophytic fungi from Huperzia serrata and their acetylcholinesterase inhibitory activity].

A total of 127 strains of endophytic fungi were isolated from roots, branches and leaves of Huperzia serrata. These strains were identified into 19 genera based on morphological characters and ribosomal DNA (rDNA) sequence analysis, there into Penicillium, Aspergillus and Podospora were dominant populations in H. serrata. From analysis results we found some endophytic fungi showed a certain degree of tissue preference. The isolation rate and colonization rate of stems were both larger than those of leaf and roots. After testing the acetylcholinesterase (AChE) inhibitory activity of these endophytic fungi, a total of 39 endophytic fungi belonging to 15 genera showed AChE inhibition. Eleven endophytic fungi showed potent AChE inhibition, 7 of which were isolated from leaf. The research not only provided theoretical basis for developing and utilizing the resources of endophytic fungi in H. serrata but also showed a new path for searching medicines resource which has AChE inhibitory activity.

Activation of carbodiimide and transformation with amine to guanidinate group by Ln(OAr)3(THF)2 (Ln: lanthanide and yttrium) and Ln(OAr)3(THF)2 as a novel precatalyst for addition of amines to carbodiimides: influence of aryloxide group.

Reaction of Ln(OAr(1))(3)(THF)(2) (Ar(1)= [2,6-((t)Bu)(2)-4-MeC(6)H(2)] with carbodiimides (RNCNR) in toluene afforded the RNCNR coordinated complexes (Ar(1)O)(3)Ln(NCNR) (R = (i)Pr (isopropyl), Ln = Y (1) and Yb (2); R = Cy (cyclohexyl), Ln = Y (3)) in high yields. Treatment of 1 and 2 with 4-chloroaniline, respectively, at a molar ratio of 1:1 yielded the corresponding monoguanidinate complex (Ar(1)O)(2)Y[(4-Cl-C(6)H(4)N)C(NH(i)Pr)N(i)Pr](THF) (4) and (Ar(1)O)(2)Yb[(4-Cl-C(6)H(4)N)C(NH(i)Pr)N(i)Pr](THF) (5). Complexes 4 and 5 can be prepared by the reaction of Ln(OAr(1))(3)(THF)(2) with RNCNR and amine in toluene at a 1:1:1 molar ratio in high yield directly. A remarkable influence of the aryloxide ligand on this transformation was observed. The similar transformation using the less bulky yttrium complexes Y(OAr(2))(3)(THF)(2) (Ar(2) = [2,6-((i)Pr)(2)C(6)H(3)]) or Y(OAr(3))(3)(THF)(2) (Ar(3) = [2,6-Me(2)C(6)H(3)]) did not occur. Complexes Ln(OAr(1))(3)(THF)(2) were found to be the novel precatalysts for addition of RNCNR with amines, which represents the first example of catalytic guanylation by the lanthanide complexes with the Ln-O active group. The catalytic activity of Y(OAr(1))(3)(THF)(2) was found to be the same as that of monoguanidinate complex 4, indicating 4 is one of the active intermediates in the present process. The other intermediate, amide complex (Ar(1)O)(2)Ln[(2-OCH(3)-C(6)H(4)NH)(2-OCH(3)-C(6)H(4)NH(2))] (6), was isolated by protonolysis of 4 with 2-OCH(3)-C(6)H(4)NH(2). All the complexes were structurally characterized by X-ray single crystal determination.

The first bridged lanthanide carbene complex formed through reduction of carbodiimide by diamine-bis(phenolate) ytterbium(II) complex and its reactivity to phenylisocyanate.

The reaction of YbL(THF)(2) (L = [-OC(6)H(2)(2,4-(t)Bu(2))(6-CH(2))](2)NCH(2)CH(2)NMe(2)) with (i)PrN=C=N(i)Pr led to the bridged carbene ytterbium complex (YbL)(2)(µ-N(i)PrCN(i)Pr) via a two-electron reduction process of carbodiimide, which reacted with PhNCO to afford a dinuclear ytterbium complex and a spiro derivative.

Chemical composition and antibacterial activity of the essential oil from leaves of Chimonanthus grammatus / 中国中药杂志

The chemical composition of essential oil, which from the leaves of Chimonanthus grammatus obtained by hydrodistillation were analyzed by GC-MS, and their possible antibacterial properties were screened. According to the results from GC-MS analysis, fifty-three components comprising 99.99% of the essential oil were identified. The major components of essential oil were 3-(4, 8-dimethyl-3,7-nonadienyl)(E) -furan (13.1%), bornyl acetate (12.66%), and 6,6-dimethyl-3-methylene-bicyclo[3.1.1] heptane (7.06%), etc. Antibacterial activity of essential oil was employed by two complementary test systems of disc diffusion and MIC/ MBC tests, which showed obviously antibacterial activity against all of the tested bacteria.

Microbial oil production by Trichosporon cutaneum B3 using cassava starch / 生物工程学报

Microbial oil, as raw material for biodiesel, can be produced by Trichosporon cutaneum B3 using cassava starch hydrolysate. Batch cultures demonstrated that there was little inhibitory effect with the concentration of cassava starch hydrolysate up to 90 g/L. The favorable initial pH, C/N molar ratio, nitrogen source and its concentration were 6.0, 116, yeast extract and 3.0 g/L, respectively. Under the optimized conditions, dry biomass reached 15.2 g/L and lipid content reached 40.9% after culture for 144 h in flask. Batch cultures in a 2 L stirred-tank fermenter were run for 44 h and resulted in dry biomass, lipid content and lipid yield of 28.7 g/L, 42.8% and 12.27 g/L, respectively. The chemical compositions of biodiesel prepared from lipids of T cutaneum B3 mainly included palmitic acid methyl ester, stearic acid methyl ester, oleic acid methyl ester and linoleic acid methyl ester etc., and its main physicochemical properties were in compliance with relevant national diesel standards. Therefore, the biodiesel prepared from lipids of T cutaneum B3 can serve as a potential fossil fuel alternatives.

[Carbon metabolism and energetic utilization of Synechococcus sp. PCC7942 under mixotrophic condition].

To investigate the energy utilization efficiency of Synechococcus sp. PCC7942 under mixotrophic conditions, we studied its growth characteristics in mixotrophic cultures with glucose and acetic acid respectively and discussed the carbon metabolism and energy utilization based on metabolic flux analysis. Results showed that both glucose and acetate could better enhance the growth of Synechococcus sp. PCC7942, and the latter was more effective. The metabolic flux through glycolytic pathway in mixotrophic cultures was stimulated by glucose whereas depressed by acetate, while the flux through the tricarboxylic acid cycle increased in both cases. Under mixotrophic conditions, glucose makes more significant impact on the diminishment of photochemical efficiency of Synechococcus sp. PCC7942. Although the contribution of light energy was smaller, the cell yields based on total energy in mixotrophic cultures were higher comparing with photoautotrophic culture. The energy conversion efficiencies based on ATP synthesis in photoautotrophic culture, mixotrophic cultures with glucose and with acetate were evaluated to be 6.81%, 7.43% and 8.77%, respectively.

[Electricity generation using the short-arm air-cathode microbial fuel cell].

The short-arm air-cathode microbial fuel cell (ACMFC) was constructed using a cramp to fix the proton exchange membrane (PEM) and carbon paper with 0.5 mg/cm2 onto the short-arm side of the anode chamber. Exoelectrogens on the surface of graphite rod were enriched by a sludge microbial fuel cell from the anaerobic digestion sludge. And the cyclic voltammetry result showed these microbes had electrochemical activities. Using the graphite rod covered by exoelectrogens as the anode and sodium acetate as the substrate, the short-arm ACMFC showed a maximal power density (Pm) of 738 mW/m2, internal resistance (Ri) of 280 omega and open circuit voltage (OCV) of 741 mV. Continuous sparging the anode chamber with nitrogen or removal of the proton exchange membrane enhance the Pm of the cell to 745 mW/m2 and 759 mW/m2 respectively. When both of the two measures were used together, the Pm reached up to 922 mW/m2. Under these three conditions the Ri of the cell was kept around 280 omega. When the substrate concentration was 12.62-100.96 mg/L and external resistance was 510 omega, the maximal voltage of the cell and the substrate concentration showed an obvious linear relation (R2 = 0.99). But when the concentration was above 100.96 mg/L, the maximal voltage stably kept around 302mV(the external resistance was 510 omega). However, the Coulombic efficiency of the short-arm ACMFC gradually increased with the increase of the substrate concentration, from 31.83% to 45.03%.

Ytterbium triflate: a highly active catalyst for addition of amines to carbodiimides to N,N',N''-trisubstituted guanidines.

Ytterbium triflate was found to be efficient catalyst for addition of amines to carbodiimides to N,N',N''-trisubstituted guanidines with a wide scope of amines under solvent-free condition.

Accumulation of flavonoids and chlorogenic acid in callus and suspension cell of Eucommia ulmoides / 中国中药杂志

<p><b>OBJECTIVE</b>To analyze and compare the cell growth and accumulation of flavonoids and chlorogenic acid in the callus and suspension cell of Eucommia ulmoides.</p><p><b>METHOD</b>The callus induced from the leaf of E. ulmoides seedlings were suspended in liquid medium. The time courses of cell growth and yields of flavonoids and chlorogenic acid were studied.</p><p><b>RESULT</b>The highest contents of flavonoids and chlorogenic acid in the callus were 13.46, 1.712 mg x g(-1), respectively, while the contents of these two secondary metabolites were 16.63, 3.93 mg x g(-1) in suspension cell culture correspondingly.</p><p><b>CONCLUSION</b>Comparing with callus, the suspension cell showed a short growth period and high growth rate with a remarkable high content of flavonoids and chlorogenic acid.</p>

Carbon and energetic metabolism of Synechococcus sp. PCC7942 under photoautotrophic conditions / 生物工程学报

Metabolic flux analysis is a very powerful tool to understand CO2 fixation and light energy utilization of microalgae during photoautotrophic cultivation. A comprehensive network structure for the autotrophic growth of Synechococcus sp. PCC7942 was proposed, and the carbon and energetic metabolism under different incident light intensity was investigated based on metabolic flux analysis in this paper. These results showed that CO2 fixation was the main energy and reducing potential trap which accounted for 85% and 70% of the total energy and reducing potential consumption respectively. We also found that the cell yield and the maximum cell yield based on ATP synthesis were maintained 2.80 g/mol and 2.97 g/mol respectively under the appointed incident intensity. But the cell yield on absorbed light energy their corresponding energy conversion efficiency were descended with the increasing of incident intensity.

Divalent lanthanide complexes: highly active precatalysts for the addition of N-H and C-H bonds to carbodiimides.

Various divalent lanthanide complexes with the formula LnL2(sol)x (L = N(TMS)2, sol = THF, x = 3, Ln = Sm (I), Eu (II), Yb (III); L = MeC5H4, sol = THF, x = 2, Ln = Sm (IV); L = ArO(Ar = [2,6-((t)Bu)2-4-MeC6H2]), sol = THF, x = 2, Ln = Sm (V)), especially complexes I- III, serve as excellent catalyst precursors for catalytic addition of various primary and secondary amines to carbodiimides, efficiently providing the corresponding guanidine derivatives with a wide range of substrates under solvent-free condition. The reaction shows good functional groups tolerance. Complexes I- III are also excellent precatalysts for addition of terminal alkynes to carbodiimides yielding a series of propiolamidines. The active sequence of Yb < Eu < Sm for metal and MeC5H4 < ArO < N(TMS)2 for ligand around the metal was observed for both reactions. The first step in both reactions was supposed to include the formation of a bimetallic bisamidinate samarium species originating from the reduction-coupling reaction of carbodiimide promoted by lanthanide(II) complex. The active species is proposed to be a lanthanide guanidinate and a lanthanide amidinate.

[Construction of sugar-based microbial fuel cells by dissimilatory metal reduction bacteria].

Dissimilatory Metal Reduction Bacteria play an important role in the anaerobic environment. This kind of bacteria gains energy by coupling the oxidation of organic acid or sugars to the reduction of metal oxides. The graphite electrode rode can also be used as the final electron acceptor due to its similarity to solid metal oxides. Based on this biological mechanism, Dissimilatory Metal Reduction Bacteria Rhodoferaxferrireducens was used to construct a suit of microbial fuel cells with sugars as fuel, and the process and mechanism of electricity generation was studied. Rhodoferax ferrireducens was inoculated into the anode chamber in which a graphite electrode served as the final electron acceptor and glucose as the sole electron donor. It was showed that current density was up to 158mA/m2 with the resistance of 510omega at the normal temperature (platform voltage was around 0.46V, the effectual electrode surface was 57cm2). Following 20days' growth a large amount of bacteria cells attached to the electrode surface had been observed through the SEM images. The plandtonic cell protein concentration was 140mg/L and the attached biomass of electrode surface was 1180mg/m2 determined by the Bradford method, which indicated quite a few bacteria attached to the electrode. By analyzing the voltage value measured by the data acquisition system, it was proved that microbial electricity generation attributed mainly to the electrochemically and biologically active cells attached to the electrode, while the planktonic cells had no ability to catalyze electricity generation and almost had not electrochemically and biologically active. Furthermore, this kind of microbial fuel cells exhibited a good electrochemical cycle property and proved to be efficient in biomass utilization and energy restore since other sugars like fructose, sucrose, even xylose, could be oxidized and finally decomposed. Vast waste biomass in the form of carbohydrates is discarded in the environment. Not only is contamination of the environment caused by the discarded biomass, but also abundant energy stored in the biomass is drained away in vain. The sugar-based microbial fuel cells constructed by Rhodoferax ferrireducens could effectively transform the energy stored in sugars into electricity. Meanwhile, the microbial fuel cells presented in this paper, which could work cleanly at normal temperature with a good cycle property, showed a promising future application in this field.

Study on Flavonoids Producing and Kinetics in Cell Suspension Culture of Eucommia ulmoides Oliv / 中国生物工程杂志

The type of basic media and the contents of plant growth substances were investigated by orthogonal design experiment,and also the effects of different culture conditions on the growth of suspension cells and the accumulation of total flavonoids in Eucommia ulmoides were studied.The results showed that B5 medium supplemented with 0.5mg/L NAA,0.6mg/L 6-BA and 30g/L sucrose,at initial pH 5.0～5.5,20g(FW)/L inoculation quantity and 110 r/min of rotation speed was a preferable culture conditions for E.ulmoides suspension cells growth and flavonoids synthesis.The results of metabolic kinetics analysis for E.ulmoides cell suspension culture showed that the logistic and Luedeking-Piret equations can be used for describing the kinetics of cell growth,sucrose consumption and flavonoids production during the process.The maximum specific growth rate(?m),the actual growth yield based on sucrose(YG) and maintenance coefficient(m) were 0.417/d,0.619g/g and 0.0206g/(g?d-1) respectively.All these outcomes could give a basis for establishing the suspension cell culture of E.ulmoides and production of the natural active components in large-scale.

Isolation and Identification of Endophytic Bacteria H-6 with High Antifungal Activity from Huperzia serrata / 微生物学通报

In this study,nearly 200 endophytic bacteria were isolated from different part of Huperzia serrata, over 60 bacterium with clear antifungal activity were selected from those cultures.Among them,strain H-6 exhibited the highest antifungal activity which was strongly inhibits the growth of many plant pathogenic fungi such as Sclerotinia scleroliorum,Fusarium graminearumt,Sclerotinia libertiana,Phytophthora capsici Leonia and Sesame fusarium wilt.According to the characteristics of morphology,physiology and biochem- istry tests and the comparison of 16S rDNA sequence,the strain H-6 was similar to the Burkholderia.So strain H-6 was identified as Burkholderia sp.H-6.The results also showed that Burkholderia sp.H-6 was markedly different from Burkholderia cepacia that was applied widely in agriculture as antagonistic bacteria. The medium and culture conditions of the strain all were optimized by single factor and orthogonal experiments.In the investigation of the culture condition,growth was carried out in a basal medium(potato juice)and gradually supplemented with the various ingredients to be investigated.The major ingredients be- ing investigated included carbon sources and nitrogen sources.The optimal antifungal activity production condition is growth in a medium(potato juice with 2.5%mannitol and 0.1%NaNO3),initial pH 4.0 at 28℃.