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1.
Nat Commun ; 11(1): 1080, 2020 Feb 21.
Artigo em Inglês | MEDLINE | ID: mdl-32081865

RESUMO

An amendment to this paper has been published and can be accessed via a link at the top of the paper.

2.
Nat Commun ; 11(1): 616, 2020 01 30.
Artigo em Inglês | MEDLINE | ID: mdl-32001691

RESUMO

Synthetic DNA is gaining momentum as a potential storage medium for archival data storage. In this process, digital information is translated into sequences of nucleotides and the resulting synthetic DNA strands are then stored for later retrieval. Here, we demonstrate reliable file recovery with PCR-based random access when as few as ten copies per sequence are stored, on average. This results in density of about 17 exabytes/gram, nearly two orders of magnitude greater than prior work has shown. We successfully retrieve the same data in a complex pool of over 1010 unique sequences per microliter with no evidence that we have begun to approach complexity limits. Finally, we also investigate the effects of file size and sequencing coverage on successful file retrieval and look for systematic DNA strand drop out. These findings substantiate the robustness and high data density of the process examined here.


Assuntos
DNA/química , Armazenamento e Recuperação da Informação/métodos , Sequência de Bases , Bases de Dados de Ácidos Nucleicos , Dosagem de Genes , Engenharia Genética/métodos , Sequenciamento de Nucleotídeos em Larga Escala , Ciência da Informação
3.
Nat Commun ; 10(1): 2933, 2019 07 03.
Artigo em Inglês | MEDLINE | ID: mdl-31270330

RESUMO

Synthetic DNA is becoming an attractive substrate for digital data storage due to its density, durability, and relevance in biological research. A major challenge in making DNA data storage a reality is that reading DNA back into data using sequencing by synthesis remains a laborious, slow and expensive process. Here, we demonstrate successful decoding of 1.67 megabytes of information stored in short fragments of synthetic DNA using a portable nanopore sequencing platform. We design and validate an assembly strategy for DNA storage that drastically increases the throughput of nanopore sequencing. Importantly, this assembly strategy is generalizable to any application that requires nanopore sequencing of small DNA amplicons.


Assuntos
DNA/genética , Armazenamento e Recuperação da Informação/métodos , DNA/síntese química , Bases de Dados Genéticas , Nanoporos , Nanotecnologia , Análise de Sequência de DNA/instrumentação
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