Predicting climate heating impacts on riverine fish species diversity in a biodiversity hotspot region.

Co-occurring biodiversity and global heating crises are systemic threats to life on Earth as we know it, especially in relatively rare freshwater ecosystems, such as in Iran. Future changes in the spatial distribution and richness of 131 riverine fish species were investigated at 1481 sites in Iran under optimistic and pessimistic climate heating scenarios for the 2050s and 2080s. We used maximum entropy modeling to predict species' potential distributions by hydrologic unit (HU) occupancy under current and future climate conditions through the use of nine environmental predictor variables. The most important variable determining fish occupancy was HU location, followed by elevation, climate variables, and slope. Thirty-seven species were predicted to decrease their potential habitat occupancy in all future scenarios. The southern Caspian HU faces the highest future species reductions followed by the western Zagros and northwestern Iran. These results can be used by managers to plan conservational strategies to ease the dispersal of species, especially those that are at the greatest risk of extinction or invasion and that are in rivers fragmented by dams.

Fishes of Afghanistan; a revised and updated annotated checklist.

The current status of the ichthyofauna of Afghanistan is revised, and an updated checklist is presented. The confirmed fishes of Afghanistan comprise 121 species belonging to 11 orders, 22 families, and 68 genera. Among these, 18 species (14.9%) are alien, and 7 species (5.8%) are considered endemic to Afghanistan. The orders with the largest numbers of species in the ichthyofauna of Afghanistan are Cypriniformes (88 species), followed by Siluriformes (14 species), Anabantiformes (4 species), Acipenseriformes, Salmoniformes, and Cyprinodontiformes (3 species in each). At the family level, Cyprinidae have the greatest number of species (36 species; 29.8% of the total species), followed by Nemacheilidae (22 species), Leuciscidae (12 species), Danionidae (8 species), and Sisoridae (6 species). A total of 48 species previously reported from Afghanistan have been excluded from the checklist, either in the present study or in previous studies. According to the IUCN Red List criteria, among 121 listed fish species, 19 (15.7%) are in the threatened categories, with 4 (3.3%) CR, 6 (5.0%) EN, and 9 (7.4%) VU. Of the total number of taxa assessed, 5.0% (6 species) are NT and 51.2% (62 species) are LC. A total of 29 species are (24.0%) Not Evaluated (NE) and 5 species (4.1%) are classified as DD.

Comparative assessment of human health risk associated with heavy metals bioaccumulation in fish species (Barbus grypus and Tenualosa ilisha) from the Karoon River, Iran: Elucidating the role of habitat and feeding habits.

Concentrations of Cd, Ni, and Pb were measured in the liver and muscle tissues of benthic omnivorous (Barbus grypus) and pelagic herbivorous (Tenualosa ilisha) fish collected from two sampling sites along the Karoon River, Khuzestan Province, southwest of Iran. Potential human health risks were evaluated by measuring the estimated daily intake (EDI), target hazard quotient (THQ), hazard index (HI), and target cancer risk (TR). The results highlight the important role of habitat and feeding habits in the uptake of HMs by the two species. The EDI for all HMs exceeded the oral reference doses (RfDo) provided by the USEPA, indicating the two fish species are not entirely safe for human consumption. The THQ values were within the permissible limit (< 1), while HI values (> 1) showed there was non-carcinogenic risk for consumers. The TR values for Pb were within the acceptable range (1.00E-06-1.00E-04) for both species.

Freshwater fishes of Syria: a revised and updated annotated checklist-2023.

The current status of the freshwater fishes of Syria is revised, and an updated checklist is presented. The confirmed freshwater fishes of Syria comprise 108 species belonging to 15 orders, 25 families, and 51 genera. Among these, 11 species (10.2%) are alien, and six species (5.6%) are considered endemic to Syria. The orders with the largest numbers of species in the ichthyofauna of Syria are Cypriniformes (68 species), followed by Siluriformes and (nine species), Cichliformes (eight species), Mugiliformes (seven species), Cyprinodontiformes (six species), and others represent one species in each. At the family level, Cyprinidae has the greatest number of species (30 species; 27.8% of the total species), followed by Leuciscidae (21 species), Nemacheilidae (11 species), Cichlidae (eight species), and Mugilidae (seven species). According to IUCN Red List criteria, among 97 naturally distributed species (alien species not included), Tristramella sacra extinct (EX) and 24 species (26.5%) are categorized as threatened extinctions, CR, EN, and VU (eight species in each). A total of 17 species previously reported from Syria have been excluded from the checklist, either in the present study or in previous studies.

Freshwater fishes of Iraq: a revised and updated annotated checklist2023.

The current status of the freshwater fishes of Iraq is revised, and an updated checklist is presented. The confirmed freshwater fishes of Iraq comprise 98 species belonging to 16 orders, 28 families, and 56 genera. Among these, 21 species (21.4%) are alien, and three species (3.0%) are considered endemic to Iraq. The orders with the largest numbers of species in the ichthyofauna of Iraq are Cypriniformes (57 species), followed by Siluriformes (12 species), Mugiliformes and Cyprinodontiformes (six species in each), Acanthuriformes and Cichliformes (three species in each), Centrarchiformes and Gobiiformes (two species in each), and the others represent only one species. At the family level, the Cyprinidae have the greatest number of species (28; 28.3% of the total species), followed by Nemacheilidae (16 species), Leuciscidae (eight species), Mugilidae (six species), Sisoridae (five species), and Xenocyprididae (four species in each). A total of 20 species that have been previously reported from Iraq have been excluded from the checklist. According to IUCN Red List criteria, among 77 naturally distributed species (alien species not included), 10 species (13.0%) are categorized as threatened extinctions, with three (3.9%) as CR, one (1.3%) as EN, and six (7.8%) as VU. A total of 38 taxa were assessed (49.4%) as LC, 27 species were not assigned NE (35.1%), and two species (2.0%) were classified as DD, i.e., with insufficient knowledge.

Cobitis indus, a new spined loach from the Dalaman River in the Eastern Aegean Sea basin (Teleostei: Cobitidae).

Cobitis indus, new species, from the Dalaman River drainage, is distinguished from other Cobitis species in the eastern Aegean Sea basin by having two laminae circularis, a bifurcate suborbital spine, a narrow caudal peduncle, pigmentation zone 4 with 1724 small blotches often fused into a stripe, pigmentation below Z4 usually absent, and one black, comma-shaped spot at the upper caudal-fin base. It is further distinguished from its closest relative, C. dorademiri, by having 13 diagnostic nucleotide substitutions in the mtDNA COI barcode region and a K2P nearestneighbour distance of 2.32.7%. This is the fourth Cobitis species found in the Dalaman River drainage making this river the most species-rich in spined loaches in the Middle East.

Capoeta ekmekciae Turan, Kottelat, Kirankaya & Engin, 2006, a junior synonym of Capoeta capoeta (Güldenstädt, 1773) (Teleostei: Cyprinidae).

Some recent works have proposed that Capoeta ekmekciae from the Çoruh River and C. capoeta from the Kura-Aras River system are synonyms based on molecular data, which prompted this study to compare their morphometric, meristic and molecular data to investigate this hypothesis. Based on the results, the C. ekmekciae form displays morphometric and meristic traits quite similar to the C. capoeta form. Since there are no diagnostic traits to distinguish these two allopatric species from each other and they share identical cytb gene, we treat C. ekmekciae as a junior synonym of C. capoeta.

Mystus cyrusi, a new species of bagrid catfish (Teleostei: Bagridae) from Middle East.

Mystus cyrusi, new species, is described from the Kol River drainage which flows to the Straits of Hormuz in southern Iran. It is distinguished from its closest relative, Mystus pelusius from the Tigris-Euphrates River system by a combination of characters: The maxillary barbel short, not reaching to beyond pelvic fin (vs. extends as far as anal fin in some female M. pelusius), shorter adipose fin (30.837.4% SL) and with a steeper sloping at its origin vs. longer (37.645.6% SL) and with a more gently sloping in M. pelusius), greater head depth (16.6421.9% SL vs. 12.616.59% SL in M. pelusius), greater caudal-peduncle depth (10.312.5% SL vs. 8.710.5% SL in M. pelusius) and fewer total gill rakers (1214, mode 12) vs. (1417 in M. pelusius). Mystus cyrusi is also well distinguished by molecular characters. Genetically, M. cyrusi shows the lowest genetic distance with M. pelusius (4.6%), and then with M. singaringan (11.6%), M. wolffii (13.1%), and M. bleekeri (13.4%) among the 21 studied species in their mtDNA sequences. Mystus cyrusi shows the highest genetic distance with M. montanus (26.5%).

Garra rezai, a new species from two widely disjunct areas in the Tigris drainage (Teleostei: Cyprinidae).

Garra rezai, new species, is described from the Chooman, a tributary of the Lesser Zab in Iran, and from headwaters of the Yanarsu, a tributary of the upper Tigris in Turkey. It is distinguished from its congeners in the Garra variabilis species group by having two pairs of barbels, a well-developed mental disc, 35-40 total scales along the lateral line, 15-19 scales along the predorsal midline, and 15-18 circumpeduncular scales. It is further characterised by having ten diagnostic nucleotide substitutions and the K2P genetic distances with the closest species i.e. G. klatti, G. kemali and G. variabilis as 11.9, 12.0, and 13.7%, respectively in the mtDNA COI barcode region.

Five new species of the sisorid catfish genus Glyptothorax from Iran (Teleostei: Sisoridae).

Five new species of Glyptothorax are described from Iran. Glyptothorax alidaeii, new species, from the Seimare in the Karkheh drainage, G. galaxias, new species, from the upper Karun drainage, G. hosseinpanahii, new species, from the Zohreh drainage, G. pallens, new species, from the Sirvan drainage, and G. shapuri, new species, from Shapur in the Helleh drainage. Glyptothorax silviae from the Jarrahi drainage is re-diagnosed. All six species are morphologically distinguishable by the structure of the thoracic adhesive apparatus, as well as morphometric characters and details in the colour pattern. They form distinct mitochondrial clades between 1.2% and 4.1% minimum K2P distance based on the mitochondrial DNA barcode region.

Maternal and zygotic activin signaling promotes adequate pattern and differentiation of mesoderm through regulation of pluripotency genes during zebrafish development.

To investigate the role of maternal Activin-like factors in the preservation of stemness and mesendoderm induction, their effects were promoted and inhibited using synthetic human Activin A or SB-505124 treatments, respectively, before the maternal to zygotic transition (MZT). To study the role of zygotic Activin-like factors, SB-505124 treatment was also used after the MZT. Promoting the signaling intensity of maternal Activin-like factors led to premature differentiation, loss of stemness, and no mesendoderm malformation, while its alleviation delayed the differentiation and caused various malformations. Inhibition of the zygotic Activin-like factors was associated with suppressing the ndr1, ndr2, oct4 (pou5f3), mycb and notail transcription as well as differentiation retardation at the oblong stage, and a broad spectrum of anomalies in a dose-dependent manner. Together, promoting the signal intensity of maternal Activin-like factors drove development along with mesendodermal differentiation, while suppression of the maternal or zygotic ones maintained the pluripotent state and delayed differentiation.

The effect of Activin pathway modulation on the expression of both pluripotency and differentiation markers during early zebrafish development compared with other vertebrates.

Activin-like factors control many developmental processes, including pluripotency maintenance and differentiation. Although Activin-like factors' action in mesendoderm induction has been demonstrated in zebrafish, their involvement in preserving the stemness remains unknown. To investigate the role of maternal Activin-like factors, their effects were promoted or blocked using synthetic human Activin A or SB-431542 treatments respectively until the maternal to zygotic transition. To study the role of zygotic Activin-like factors, SB-431542 treatment was also applied after the maternal to zygotic transition. The effect of the pharmacological modulations of the Activin/Smad pathway was then studied on the mRNA expressions of the ndr1, ndr2, tbxta (no tail/ntl) as the differentiation index, mych, nanog, and oct4 (pou5f3) as the pluripotency markers of the zebrafish embryonic cells as well as sox17 as a definitive endoderm marker. Expression of the target genes was measured at the 16-cell, 256-cell, 1K-cell, oblong, dome, and shield stages using the real-time quantitative polymerase chain reaction (RT-qPCR). Activation of the maternal Activin signaling pathway led to an increase in zygotic expression of the tbxta, particularly marked at the oblong stage. In other words, promotion of the maternal Activin/Smad pathway induced differentiation by advancing the major peaks of ndr1 and nanog, thereby eliciting tbxta expression. Whereas suppression of the maternal or zygotic Activin/Smad pathway sustained the pluripotency by preventing the major peaks of ndr1 and nanog as well as tbxta encoding.

Rhodeus caspius, a new bitterling from Iran (Teleostei: Cypriniformes: Acheilognathidae).

A new bitterling from the Rhodeus amarus group is described based on morphological and molecular data. Rhodeus caspius sp. nov. from the Caspian Sea, Urmia Lake and the upper Tigris River drainages in Iran, is distinguished from its closest congeners (R. amarus and R. colchicus) by having short post-dorsal distance and caudal peduncle length and long head length. It is also characterized by one fixed diagnostic nucleotide substitutions and a K2P nearest neighbor distance of 1% to R. amarus and R. colchicus in the mtDNA COI barcode region.

Paraschistura makranensis, a new loach from the Jegin River drainage in southern Iran with comments on P. ilamensis and P. pasatigris (Teleostei: Nemacheilidae).

Paraschistura makranensis, new species, is described from the Jegin River drainage in southern Iran. It is distinguished from its congeners in Iran by having a plain brown or slightly mottled colour pattern on the flanks, a very slender body with a relatively short head, a complete lateral line extending almost to the caudal-fin base, the caudal peduncle covered by scales, and a suborbital flap in males. Paraschistura makranensis is distinguished from P. bampurensis and P. hormuzensis, its closest relatives in our dataset, by an uncorrected-pairwise distance based on the COI data of 4.0 and 5.4%, respectively. We treat Paraschistura pasatigris as a synonym of P. ilamensis.

Alburnus zagrosensis, a junior synonym of Alburnus sellal (Teleostei: Leuciscidae).

Morphometric, meristic and molecular (COI) characters of Alburnus zagrosensis, from the upper Karun River drainage in Iran, largely overlap or are identical with those of A. sellal, a species widely distributed in the Qweik River and the Persian Gulf basin, including the Karun River drainage. As no character states could be found to clearly distinguish these species, A. zagrosensis should be treated as a junior synonym of A. sellal.

A new species of the genus Capoeta Valenciennes, 1842 from the Caspian Sea basin in Iran (Teleostei, Cyprinidae).

A new species of algae-scraping cyprinid of the genus Capoeta Valenciennes, 1842 is described from the Kheyroud River, located in the southern part of the Caspian Sea basin in Iran. The species differs from other members of this genus by a combination of the following characters: one pair of barbels; predorsal length equal to postdorsal length; maxillary barbel slightly smaller than eye's horizontal diameter and reach to posterior margin of orbit; intranasal length slightly shorter than snout length; lateral line with 46-54 scales; 7-9 scales between dorsal-fin origin and lateral line, and 6-7 scales between anal-fin origin and lateral line.

Cobitis keyvani, a junior synonym of Cobitis faridpaki (Teleostei: Cobitidae).

The validity of C. keyvani and C. faridpaki is assessed based on morphological and molecular (COI) data from fishes collected from the type localities of both species. No diagnostic character was found to distinguish both species. Therefore, we treat C. keyvani as a junior synonym of C. faridpaki.

Alburnoides recepi, a junior synonym of Alburnus caeruleus (Teleostei: Cyprinidae).

Alburnoides recepi was described from the stream Merzimen, a tributary of the Euphrates in Turkey. Morphometric, meristic and molecular (Cyt b) characters of A. recepi are largely overlapping or even identical with those of Alburnus         caeruleus, a species known from the Qweik, Euphrates and Tigris River drainages. Alburnoides recepi is treated as a synonym of A. caeruleus.

A molecular approach to the genus Alburnoides using COI sequences data set and the description of a new species, A. damghani, from the Damghan River system (the Dasht-e Kavir Basin, Iran) (Actinopterygii, Cyprinidae).

The molecular status of nine species of the genus Alburnoides from different river drainages in Iran and additionally by seven species from Europe was assessed. mtDNA COI gene sequences from freshly collected specimens and available NCBI data revealed four major phylogenetic lineages. Based on the results, a distinct taxon from the Cheshmeh Ali (Ali Spring), a Damghan River tributary in the endorheic Dasht-e Kavir basin, northern Iran, which is the closest sister to Alburnoides namaki (Namak Lake basin) + Alburnoides coadi (Nam River in the endorheic Dasht-e Kavir basin) is considered as a new species, Alburnoides damghani sp. n. It is distinguished from other Alburnoides species in Iran by a combination of character states including: a weakly-developed, variably-scaled, ventral keel from completely scaleless to completely scaled, a short snout with the tip of the mouth cleft on a level with the lower margin of the pupil or slightly lower, a small eye (eye horizontal diameter slightly to markedly less than interorbital width), commonly 8½ branched dorsal-fin rays, commonly 11-12½ branched anal-fin rays, 40-46(47) total lateral-line scales, 2.5-4.2 or 2.5-4.1 pharyngeal teeth, gill rakers short and widely spaced, 6-8 in total, 39-41 (commonly 40), total vertebrae, (19)20(21) abdominal vertebrae, 19-21 (most commonly 20) caudal vertebrae, abdominal vertebral region most commonly equal to or longer than caudal region, and most common vertebral formulae 20+20 and 21+19.

Estimating the DNA strand breakage using a fuzzy inference system and agarose gel electrophoresis, a case study with toothed carp Aphanius sophiae exposed to cypermethrin.

The DNA breakage has been widely used in ecotoxicological studies to investigate effects of pesticides in fishes. The present study used a fuzzy inference system to quantify the breakage of DNA double strand in Aphanius sophiae exposed to the cypermethrin. The specimens were adapted to different temperatures and salinity for 14 days and then exposed to cypermethrin. DNA of each specimens were extracted, electrophoresed and photographed. A fuzzy system with three input variables and 27 rules were defined. The pixel value curve of DNA on each gel lane was obtained using ImageJ. The DNA breakage was quantified using the pixel value curve and fuzzy system. The defuzzified values were analyzed using a three-way analysis of variance. Cypermethrin had significant effects on DNA breakage. Fuzzy inference systems can be used as a tool to quantify the breakage of double strand DNA. DNA double strand of the gill of A. sophiae is sensitive enough to be used to detect cypermethrin in surface waters in concentrations much lower than those reported in previous studies.