A Pockels cell enabled heterodyne phase contrast imaging diagnostic for detection of ion cyclotron emission.

This work describes a novel optical heterodyne detection scheme that significantly extends the frequency response of the phase contrast imaging method to detect electron density fluctuations in tens of megahertz frequency range. The system employs a variable frequency electro-optic modulator to allow operation at any frequency in the range 10-40 MHz without the need to realign the system. The frequency coverage of the system makes it suitable to measure the radial structure of the electron density component of ion cyclotron emission on devices having confining magnetic field of a few tesla, thus extending the purely temporal measurements provided so far by magnetic probes.

Turbulence and jet-driven zonal flows: Secondary circulation in rotating fluids due to asymmetric forcing.

We report on experiments and modeling on a rotating confined liquid that is forced by circumferential jets coaxial with the rotation axis, wherein system-scale secondary flows are observed to emerge. The jets are evenly divided in number between inlets and outlets and have zero net mass transport. For low forcing strengths the sign of this flow depends on the sign of a sloped end cap, which simulates a planetary ß plane. For increased forcing strengths the secondary flow direction is insensitive to the slope sign, and instead appears to be dominated by an asymmetry in the forcing mechanism, namely, the difference in radial divergence between the inlet and outlet jet profiles. This asymmetry yields a net radial velocity that is affected by the Coriolis force, inducing secondary zonal flow.

Overview of the Wendelstein 7-X phase contrast imaging diagnostic.

A phase contrast imaging (PCI) diagnostic has been developed for the Wendelstein 7-X (W7-X) stellarator. This diagnostic, funded by the U.S. Department of Energy through the Office of Fusion Energy Sciences, is a collaboration between the Max Planck Institute for Plasmaphysics, MIT, and SUNY Cortland. The primary motivation for the development of the PCI diagnostic is measurement of turbulent fluctuations, such as the ion temperature gradient, electron temperature gradient, and the trapped electron mode instabilities. Understanding how the magnetic geometry and other externally controllable parameters, such as the fueling method and heating scheme, modify the amplitude and spectrum of turbulence is important for finding operational scenarios that can lead to improved performance at fusion-relevant temperatures and densities. The PCI system is also sensitive to coherent fluctuations, as may arise from Alfvén eigenmodes or other MHD activity, for example. The PCI method creates an image of line-integrated variations in the index of refraction. For a plasma, the image created is proportional to the line-integral of electron density fluctuations. This paper provides an overview of some key features of the hardware and the optical system and presents two examples of recent measurements from the W7-X OP1.2a experimental campaign.

Reynolds number scaling of the influence of boundary layers on the global behavior of laboratory quasi-Keplerian flows.

We present fluid velocity measurements in a modified Taylor-Couette device operated in the quasi-Keplerian regime, where it is observed that nearly ideal flows exhibit self-similarity under scaling of the Reynolds number. In contrast, nonideal flows show progressive departure from ideal Couette as the Reynolds number is increased. We present a model that describes the observed departures from ideal Couette rotation as a function of the fluxes of angular momentum across the boundaries, capturing the dependence on Reynolds number and boundary conditions.

A design path for the hierarchical self-assembly of patchy colloidal particles.

Patchy colloidal particles are promising candidates for building blocks in directed self-assembly. To be successful the surface patterns need to be simple enough to be synthesized, while feature-rich enough to cause the colloidal particles to self-assemble into desired structures. Achieving this is a challenge for traditional synthesis methods. Recently it has been suggested that surface patterns themselves can be made to self-assemble. In this paper we present a design path for the hierarchical targeted self-assembly of patchy colloidal particles based on self-assembling surface patterns. At the level of the surface structure, we use a predictive method utilizing the universality of stripes and spots, coupled with stoichiometric constraints, to cause highly specific and functional patterns to self-assemble on spherical surfaces. We use a minimalistic model of an alkanethiol on gold as a demonstration, showing that even with limited control over the interaction between surface constituents we can obtain patterns that cause the colloidal particles themselves to self-assemble into various complex geometric structures, such as strings, membranes, cubic aggregates and colloidosomes, as well as various crystalline patterns.

Nonlinear stability of laboratory quasi-Keplerian flows.

Experiments in a modified Taylor-Couette device, spanning Reynolds numbers of 10(5) to greater than 10(6), reveal the nonlinear stability of astrophysically relevant flows. Nearly ideal rotation, expected in the absence of axial boundaries, is achieved for a narrow range of operating parameters. Departures from optimal control parameters identify centrifugal instability of boundary layers as the primary source of turbulence observed in former experiments. By driving perturbations from a series of jets we demonstrate the robustly quiescent nature of quasi-Keplerian flows, indicating that sustained turbulence does not exist.

Using the uncertainty principle to design simple interactions for targeted self-assembly.

We present a method that systematically simplifies isotropic interactions designed for targeted self-assembly. The uncertainty principle is used to show that an optimal simplification is achieved by a combination of heat kernel smoothing and Gaussian screening of the interaction potential in real and reciprocal space. We use this method to analytically design isotropic interactions for self-assembly of complex lattices and of materials with functional properties. The derived interactions are simple enough to narrow the gap between theory and experimental implementation of theory based designed self-assembling materials.

Chiral surfaces self-assembling in one-component systems with isotropic interactions.

We show that chiral symmetry can be broken spontaneously in one-component systems with isotropic interactions, i.e., many-particle systems having maximal a priori symmetry. This is achieved by designing isotropic potentials that lead to self-assembly of chiral surfaces. We demonstrate the principle on a simple chiral lattice and on a more complex lattice with chiral supercells. In addition, we show that the complex lattice has interesting melting behavior with multiple morphologically distinct phases that we argue can be qualitatively predicted from the design of the interaction.

Novel self-assembled morphologies from isotropic interactions.

We present results from particle simulations with isotropic medium range interactions in two dimensions. At low temperature novel types of aggregated structures appear. We show that these structures can be explained by spontaneous symmetry breaking in analytic solutions to an adaptation of the spherical spin model. We predict the critical particle number where the symmetry breaking occurs and show that the resulting phase diagram agrees well with results from particle simulations.

Designing isotropic interactions for self-assembly of complex lattices.

We present a direct method for solving the inverse problem of designing isotropic potentials that cause self-assembly into target lattices. Each potential is constructed by matching its energy spectrum to the reciprocal representation of the lattice to guarantee that the desired structure is a ground state. We use the method to self-assemble complex lattices not previously achieved with isotropic potentials, such as a snub square tiling and the kagome lattice. The latter is especially interesting because it provides the crucial geometric frustration in several proposed spin liquids.

Universality of striped morphologies.

We present a method for predicting the low-temperature behavior of spherical and Ising spin models with isotropic potentials. For the spherical model the characteristic length scales of the ground states are exactly determined but the morphology is shown to be degenerate with checkerboard patterns, stripes and more complex morphologies having identical energy. For the Ising models we show that the discretization breaks the degeneracy causing striped morphologies to be energetically favored and therefore they arise universally as ground states to potentials whose Hankel transforms have nontrivial minima.

Observation of reversed shear Alfvén eigenmodes between sawtooth crashes in the Alcator C-Mod tokamak.

Groups of frequency chirping modes observed between sawtooth crashes in the Alcator C-Mod tokamak are interpreted as reversed shear Alfvén eigenmodes near the q=1 surface. These modes indicate that a reversed shear q profile is generated during the relaxation phase of the sawtooth cycle. Two important parameters, q_{min} and its radial position, are deduced from comparisons of measured density fluctuations with calculations from the ideal MHD code NOVA. These studies provide valuable constraints for further modeling of the sawtooth cycle.

A novel strategy based on histological protein profiling in-silico for identifying potential biomarkers in urinary bladder cancer.

OBJECTIVE: To screen a publicly available immunohistochemistry (IHC) based web-atlas, to identify key proteins in bladder cancer that might serve as potential biomarkers. MATERIALS AND METHODS: The first version of the Human Protein Atlas (HPA 1.0), with 660 proteins, was visually examined to identify proteins with a variable staining pattern among the 12 tissue samples representing bladder cancer. None or limited previous characterization in bladder cancer, as well as a supportive Western blot, were also required. The selected proteins were then evaluated in an independent set of patient samples (106 tumour samples of differing stage and grade) represented in a tissue microarray (TMAi). The IHC expression of the identified proteins in the TMAi was scored and related to tumour stage and grade. RESULTS: The expression profiles of the 13 proteins selected from the web-atlas were confirmed in the TMAi. Expression patterns for seven proteins were significantly altered (P < 0.05) with higher stage and/or grade. Three of those (CN130, DSG3, PHF6) lack characterization in bladder cancer, whereas the remaining four proteins have previously been suggested as key proteins/potential biomarkers in cancer, some of them also in bladder cancer. CONCLUSION: New candidate proteins for urinary bladder cancer were identified through screening of the publicly available HPA 1.0. Although further evaluation is necessary, this strategy is promising in the search for new biomarkers, with potential to improve the management of patients with this disease.

Palmoplantar pustulosis and sternocostoclavicular arthro-osteitis.

Seventeen patients with shoulder pain and radiographic involvement of the sternoclavicular or sternocostal joints, or both, are described. Eleven of these patients also had palmoplantar pustulosis. Histological examination of the joints showed chronic and subacute inflammation, increased osteoblastic activity, and cartilage degeneration. Propionibacterium acnes was cultured in tissue samples from seven of the 15 biopsied patients, a finding at variance with those of previous reports. The possibility that sternoclavicular arthro-osteitis is of infectious origin should be the subject of further investigation. Non-steroidal anti-inflammatory drugs (NSAIDs) may provide pain relief, possibly owing to their inhibitory action on osteoblasts. In cases of severely restricted movement or severe pain resection of the medial clavicle may be considered.

A case of blackthorn synovitis.

A seven-year-old boy fell against a blackthorn bush and found that thorns had penetrated the skin over the left knee. Aseptic synovitis developed with repeated febrile episodes. With the suspicion of septic arthritis, the patient was treated with antibiotics on repeated occasions, two negative joint aspirations and a knee joint exploration were performed. Three months after the injury the correct diagnosis was made at a second arthrotomy when an intra-articular thorn was removed and synovectomy carried out, after which healing was uneventful.