Isomer-selective vibrational spectroscopy of jet-cooled phenol-acetylene aggregates.

The structures of the phenol (Ph)-acetylene (A) clusters PhA1,2,3 and Ph2A1 are assigned on the basis of isomer and mass specific IR-UV double resonance spectroscopy and compared to the structure of the PhA cocrystal. The structures of the PhA1,2,3 clusters are dominated by phenol-acetylene π-hydrogen bonds whereas Ph2A1 binds via OH···OH···C≡C interaction with dominating Ph-Ph hydrogen bond like in the phenol dimer and acetylene attached to the free OH group of the proton acceptor phenol. The macroscopic crystal is a clathrate of phenol with acetylene with hydrogen bridges only between the phenol molecules and not between phenol and acetylene. (1) A possible aggregation pathway is proposed in which larger phenol clusters like Ph6 are cyclic with no free OH available anymore to which acetylene could attach as proton acceptor.

Acetylation makes the difference: a joint experimental and theoretical study on low-lying electronically excited states of 9H-adenine and 9-acetyladenine.

Vibronic spectra of 9H-adenine, 9-acetyladenine and several alkyladenines have been recorded by resonant two-photon ionization spectroscopy of the laser-desorbed molecules, entrained in a molecular beam. While adenine and the alkyladenines exhibit similar electronic spectra, 9-acetyladenine behaves considerably different. Theoretical absorption spectra of 9H-adenine and 9-acetyladenine were calculated using the combined density functional theory/multi-reference configuration interaction approach and using second order coupled cluster theory, in order to explain striking differences in the experimental spectra. The major differences between the 9H-adenine and the 9-acetyladenine absorption spectra can be traced back to the different configurations, which contribute to the excitations, both of the lowest ππ* and the nπ* states. While the excitations in 9H-adenine are localized in the chromophore, they show considerable charge transfer character from the chromophore to the acetyl group in the case of 9-acetyladenine.

Towards a spectroscopic and theoretical identification of the isolated building blocks of the benzene-acetylene cocrystal.

Isomer- and mass-selective UV and IR-UV double resonance spectra of the BA3, B2A, and B2A2 clusters of benzene (B) and acetylene (A) are presented. Cluster structures are assigned by comparison with the UV and IR spectra of benzene, the benzene dimer, as well as the BA, BA2, and B2A clusters. The intermolecular vibrations of BA are identified by dispersed fluorescence spectroscopy. Assignment of the cluster structures is supported by quantum chemical calculations of IR spectra with spin-component scaled second-order Møller-Plesset (SCS-MP2) theory. Initial propositions for various structures of the BA3 and B2A2 aggregates are generated with model potentials based on density functional theory combined with the symmetry-adapted perturbation theory (DFT-SAPT) approach. Shape and relative cluster stabilities are then confirmed with SCS-MP2. T-shaped geometries are the dominant structural motifs. Higher-energy isomers are also observed. The detected cluster structures are correlated with possible cluster formation pathways and their role as crystallization seeds is discussed.

Dispersed fluorescence and delayed ionization of jet-cooled 2-aminopurine: relaxation to a dark state causes weak fluorescence.

Dark state: The photophysics of 9H-2AP (see figure) depends strongly on the solvent and the temperature. In polar, aprotic solvents the fluorescence quantum yield is lower compared to protic ones. Analysis of the diffuse fluorescence spectra point to the existence of a dark singlet n,pi* state which is long-lived (1 microsecond).

IR/UV spectra and quantum chemical calculations of Trp-Ser: stacking interactions between backbone and indole side-chain.

We present infrared-UV double resonance spectra and quantum chemical calculations of the natural di-peptide H-Trp-Ser-OH. Two conformers are present in the supersonic expansions. They have a compact folded structure with two hydrogen bonds and with the serin residue stacked above the indole ring and an unusual NH(Trp)...O=C interaction in the lowest energy conformer. Conformational assignments are based on comparison with calculated (B97-D/TZV2P) structures and vibrational frequencies. Inclusion of dispersion in the quantum chemical calculations is mandatory for an accurate description of the conformer energies. We provide comparisons between methods often used in biochemistry and the dispersion-corrected double hybrid functional (B2PLYP-D) as a reference. Only concerted experimental and theoretical studies can unravel the conformational complexity already present in a dipeptide.