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1.
Sci Rep ; 10(1): 1400, 2020 Jan 29.
Artigo em Inglês | MEDLINE | ID: mdl-31996733

RESUMO

Bonding of a variety of inorganic and organic polymers as multi-layered structures is one of the main challenges for biochip production even to date, since the chemical nature of these materials often does not allow easy and straight forward bonding and proper sealing. After selection of an appropriate method to bond the chosen materials to form a complex biochip, function and stability of bonding either requires qualitative burst tests or expensive mechanical multi-test stations, that often do not have the right adaptors to clamp biochip slides without destruction. Therefore, we have developed a simple and inexpensive bonding test based on 3D printed transmission elements that translate compressive forces via manual compression, hand press or hydraulic press compression into shear and tensile force. Mechanical stress simulations showed that design of the bonding geometry and size must be considered for bonding tests since the stress distribution thus bonding strength heavily varies with size but also with geometry. We demonstrate the broad applicability of our 3D printed bonding test system by testing the most frequent bonding strategies in combination with the respective most frequently used biochip material in a force-to-failure study. All evaluated materials are biocompatible and used in cell-based biochip devices. This study is evaluating state-of-the-art bonding approaches used for sealing of microfluidic biochips including adhesive bonding, plasma bonding, solvent bonding as well as bonding mediated by amino-silane monolayers or even functional thiol-ene epoxy biochip materials that obviate intermediate adhesive layers.

2.
Sci Rep ; 9(1): 9287, 2019 06 26.
Artigo em Inglês | MEDLINE | ID: mdl-31243326

RESUMO

In the advent of affordable photo- and soft-lithography using polydimethylsiloxane (PDMS), low cost multi-step microfabrication methods have become available to a broad scientific community today. Although these methods are frequently applied for microfluidic prototype production in academic and industrial settings, fast design iterations and rapid prototyping within a few minutes with a high degree of flexibility are nearly impossible. To reduce microfluidic concept-to-chip time and costs, a number of alternative rapid prototyping techniques have recently been introduced including CNC micromachining, 3D printing and plotting out of numeric CAD designs as well as micro-structuring of thin PDMS sheets and pressure sensitive adhesives. Although micro-structuring of pressure sensitive adhesives promises high design flexibility, rapid fabrication and simple biochip assembly, most adhesives are toxic for living biological systems. Since an appropriate bio-interface and proper biology-material interaction is key for any cell chip and organ-on-a-chip system, only a limited number of medical-grade materials are available for microfluidic prototyping. In this study, we have characterized four functional biomedical-grade pressure sensitive adhesives for rapid prototyping (e.g. less than 1 hour) applications including structuring precision, physical and optical properties as well as biocompatibilities. While similar biocompatibility was found for all four adhesives, significant differences in cutting behavior, bonding strength to glass and polymers as well as gas permeability was observed. Practical applications included stability testing of multilayered, membrane-integrated organ-on-a-chip devices under standard cell culture conditions (e.g. 2-3 weeks at 37 °C and 100% humidity) and a shear-impact up to 5 dynes/cm2. Additionally, time- and shear-dependent uptake of non-toxic fluorescently labelled nanoparticles on human endothelial cells are demonstrated using micro-structured adhesive-bonded devices. Our results show that (a) both simple and complex microdevices can be designed, fabricated and tested in less than 1 hour, (b) these microdevices are stable for weeks even under physiological shear force conditions and (c) can be used to maintain cell monolayers as well as 3D cell culture systems.


Assuntos
Dispositivos Lab-On-A-Chip , Microfluídica/instrumentação , Impressão Tridimensional/instrumentação , Adesivos/química , Materiais Biocompatíveis/química , Simulação por Computador , Dimetilpolisiloxanos/química , Células Endoteliais/efeitos dos fármacos , Desenho de Equipamento , Células Endoteliais da Veia Umbilical Humana , Humanos , Teste de Materiais , Microtecnologia , Oxigênio/química , Permeabilidade , Polímeros , Estresse Mecânico , Resistência à Tração
3.
Mater Today Bio ; 4: 100023, 2019 Sep.
Artigo em Inglês | MEDLINE | ID: mdl-32159153

RESUMO

In this work, we describe a microfluidic three-dimensional (3D) chondrocyte culture mimicking in vivo articular chondrocyte morphology, cell distribution, metabolism, and gene expression. This has been accomplished by establishing a physiologic nutrient diffusion gradient across the simulated matrix, while geometric design constraints of the microchambers drive native-like cellular behavior. Primary equine chondrocytes remained viable for the extended culture time of 3 weeks and maintained the low metabolic activity and high Sox9, aggrecan, and Col2 expression typical of articular chondrocytes. Our microfluidic 3D chondrocyte microtissues were further exposed to inflammatory cytokines to establish an animal-free, in vitro osteoarthritis model. Results of our study indicate that our microtissue model emulates the basic characteristics of native cartilage and responds to biochemical injury, thus providing a new foundation for exploration of osteoarthritis pathophysiology in both human and veterinary patients.

4.
Animal ; 10(11): 1883-1889, 2016 Nov.
Artigo em Inglês | MEDLINE | ID: mdl-27160573

RESUMO

The production of protein from animal sources is often criticized because of the low efficiency of converting plant protein from feeds into protein in the animal products. However, this critique does not consider the fact that large portions of the plant-based proteins fed to animals may be human-inedible and that the quality of animal proteins is usually superior as compared with plant proteins. The aim of the present study was therefore to assess changes in protein quality in the course of the transformation of potentially human-edible plant proteins into animal products via livestock production; data from 30 Austrian dairy farms were used as a case study. A second aim was to develop an approach for combining these changes with quantitative aspects (e.g. with the human-edible feed conversion efficiency (heFCE), defined as kilogram protein in the animal product divided by kilogram potentially human-edible protein in the feeds). Protein quality of potentially human-edible inputs and outputs was assessed using the protein digestibility-corrected amino acid score and the digestible indispensable amino acid score, two methods proposed by the Food and Agriculture Organization of the United Nations to describe the nutritional value of proteins for humans. Depending on the method used, protein scores were between 1.40 and 1.87 times higher for the animal products than for the potentially human-edible plant protein input on a barn-gate level (=protein quality ratio (PQR)). Combining the PQR of 1.87 with the heFCE for the same farms resulted in heFCE×PQR of 2.15. Thus, considering both quantity and quality, the value of the proteins in the animal products for human consumption (in this case in milk and beef) is 2.15 times higher than that of proteins in the potentially human-edible plant protein inputs. The results of this study emphasize the necessity of including protein quality changes resulting from the transformation of plant proteins to animal proteins when evaluating the net contribution of livestock to the human food supply. Furthermore, these differences in protein quality might also need to be considered when choosing a functional unit for the assessment of environmental impacts of the production of different proteins.


Assuntos
Agricultura/estatística & dados numéricos , Proteínas Alimentares/normas , Abastecimento de Alimentos/estatística & dados numéricos , Gado , Carne/normas , Animais , Áustria , Bovinos , Indústria de Laticínios , Meio Ambiente , Feminino , Humanos , Leite/química , Valor Nutritivo , Proteínas de Vegetais Comestíveis/provisão & distribuição
5.
J Dairy Sci ; 99(2): 1228-1236, 2016 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-26709167

RESUMO

Besides the widely discussed negative environmental effects of dairy production, such as greenhouse gas emissions, the feeding of large amounts of potentially human-edible feedstuffs to dairy cows is another important sustainability concern. The aim of this study was therefore to investigate the effects of a complete substitution of common cereal grains and pulses with a mixture of wheat bran and sugar beet pulp in a high-forage diet on cow performance, production efficiency, feed intake, and ruminating behavior, as well as on net food production potential. Thirteen multiparous and 7 primiparous mid-lactation Holstein dairy cows were randomly assigned to 1 of 2 treatments in a change-over design with 7-wk periods. Cows were fed a high-forage diet (grass silage and hay accounted for 75% of the dry matter intake), supplemented with either a cereal grain-based concentrate mixture (CON), or a mixture of wheat bran and dried sugar beet pulp (WBBP). Human-edible inputs were calculated for 2 different scenarios based on minimum and maximum potential recovery rates of human-edible energy and protein from the respective feedstuffs. Dietary starch and neutral detergent fiber contents were 3.0 and 44.1% for WBBP, compared with 10.8 and 38.2% in CON, respectively. Dietary treatment did not affect milk production, milk composition, feed intake, or total chewing activity. However, chewing index expressed in minutes per kilogram of neutral detergent fiber ingested was 12% lower in WBBP compared with CON. In comparison to CON, the human-edible feed conversion efficiencies for energy and protein, defined as human-edible output per human-edible input, were 6.8 and 5.3 times higher, respectively, in WBBP under the maximum scenario. For the maximum scenario, the daily net food production (human-edible output minus human-edible input) increased from 5.4 MJ and 250 g of crude protein per cow in CON to 61.5 MJ and 630 g of crude protein in the WBBP diet. In conclusion, our data suggest that in forage-based dairy production systems, wheat bran and sugar beet pulp could replace common cereal grains in mid-lactation dairy cows without impairing performance, while strongly increasing human-edible feed conversion efficiency and net food production index.


Assuntos
Beta vulgaris , Bovinos , Dieta/veterinária , Fibras na Dieta , Animais , Carboidratos da Dieta/metabolismo , Proteínas Alimentares/administração & dosagem , Suplementos Nutricionais , Ingestão de Alimentos , Grão Comestível , Ingestão de Energia , Feminino , Abastecimento de Alimentos , Humanos , Lactação , Mastigação , Leite/química , Poaceae , Silagem
6.
J Dairy Sci ; 98(7): 4762-71, 2015 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-25981072

RESUMO

A rumen simulation technique was used to evaluate the effects of the complete substitution of a common concentrate mixture (CON) with a mixture consisting solely of by-products from the food industry (BP) at 2 different forage-to-concentrate ratios on ruminal fermentation profile, nutrient degradation, and abundance of rumen microbiota. The experiment was a 2×2 factorial arrangement with 2 concentrate types (CON and BP) and 2 concentrate levels (25 and 50% of diet dry matter). The experiment consisted of 2 experimental runs with 12 fermentation vessels each (n=6 per treatment). Each run lasted for 10d, with data collection on the last 5d. The BP diets had lower starch, but higher neutral detergent fiber (NDF) and fat contents compared with CON. Degradation of crude protein was decreased, but NDF and nonfiber carbohydrate degradation were higher for the BP diets. At the 50% concentrate level, organic matter degradation tended to be lower for BP and CH4 formation per unit of NDF degraded was also lower for BP. The BP mixture led to a higher concentration of propionate and a lower acetate-to-propionate ratio, whereas concentrations of butyrate and caproate decreased. Concentrate type did not affect microbial community composition, except that the abundance of bacteria of the genus Prevotella was higher for BP. Increasing the concentrate level resulted in higher degradation of organic matter and crude protein. At the higher concentrate level, total short-chain fatty acid formation increased and concentrations of isobutyrate and valerate decreased. In addition, at the 50% concentrate level, numbers of protozoa increased, whereas numbers of methanogens, anaerobic fungi, and fibrolytic bacteria decreased. No interaction was noted between the 2 dietary factors on most variables, except that at the higher concentrate level the effects of BP on CH4 and CO2 formation per unit of NDF degraded, crude protein degradation, and the abundance of Prevotella were more prominent. In conclusion, the results of this study suggest that BP in the diet can adequately substitute CON with regard to ruminal fermentation profile and microbiota, showing even favorable fermentation patterns when fed at 50% inclusion rate.


Assuntos
Ração Animal/análise , Bovinos/fisiologia , Digestão/efeitos dos fármacos , Fermentação/efeitos dos fármacos , Microbioma Gastrointestinal/efeitos dos fármacos , Rúmen/efeitos dos fármacos , Fenômenos Fisiológicos da Nutrição Animal/efeitos dos fármacos , Animais , Dieta/veterinária , Feminino , Rúmen/metabolismo
7.
J Dairy Sci ; 98(2): 1225-33, 2015 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-25483200

RESUMO

When fed human-edible feeds, such as grains and pulses, dairy cows are very inefficient in transforming them into animal products. Therefore, strategies to reduce human-edible inputs in dairy cow feeding are needed to improve food efficiency. The aim of this feeding trial was to analyze the effect of the full substitution of a common concentrate mixture with a by-product concentrate mixture on milk production, feed intake, blood values, and the edible feed conversion ratio (eFCR), defined as human-edible output per human edible input. The experiment was conducted as a change-over design, with each experimental period lasting for 7wk. Thirteen multiparous and 5 primiparous Holstein cows were randomly assigned to 1 of 2 treatments. Treatments consisted of a grass silage-based forage diet supplemented with either conventional ingredients or solely by-products from the food processing industry (BP). The BP mixture had higher contents of fiber and ether extract, whereas starch content was reduced compared with the conventional mixture. Milk yield and milk solids were not affected by treatment. The eFCR in the BP group were about 4 and 2.7 times higher for energy and protein, respectively. Blood values did not indicate negative effects on cows' metabolic health status. Results of this feeding trial suggest that by-products could replace common concentrate supplements in dairy cow feeding, resulting in an increased eFCR for energy and protein which emphasizes the unique role of dairy cows as net food producers.


Assuntos
Ração Animal , Fenômenos Fisiológicos da Nutrição Animal , Bovinos/fisiologia , Grão Comestível , Ração Animal/análise , Animais , Dieta/veterinária , Fibras na Dieta , Proteínas Alimentares/metabolismo , Ingestão de Alimentos/fisiologia , Metabolismo Energético , Feminino , Indústria de Processamento de Alimentos , Humanos , Resíduos Industriais , Lactação/fisiologia , Leite/química , Poaceae , Pulso Arterial , Silagem , Amido
8.
Biosens Bioelectron ; 40(1): 82-8, 2013 Feb 15.
Artigo em Inglês | MEDLINE | ID: mdl-22770907

RESUMO

Adhesion and spreading of cells strongly depend on the properties of the underlying surface, which has significant consequences in long-term cell behavior adaption. This relationship is important for the understanding of both biological functions and their bioactivity in disease-related applications. Employing our magnetic lab-on-a-chip system, we present magnetoresistive-based real-time and label-free detection of cellular phagocytosis behavior during their spreading process on particle-immobilized sensor surfaces. Cell spreading experiments carried out on particle-free and particle-modified surfaces reveal a delay in spreading rate after an elapsed time of about 2.2h for particle-modified surfaces due to contemporaneous cell membrane loss by particle phagocytosis. Our associated magnetoresistive measurements show a high uptake rate at early stages of cell spreading, which decreases steadily until it reaches saturation after an average elapsed time of about 100 min. The corresponding cellular average uptake rate during the entire cell spreading process accounts for three particles per minute. This result represents a four times higher phagocytosis efficiency compared to uptake experiments carried out for confluently grown cells, in which case cell spreading is already finished and, thus, excluded. Furthermore, other dynamic cell-surface interactions at nano-scale level such as cell migration or the dynamics of cell attachment and detachment are also addressable by our magnetic lab-on-a-chip approach.


Assuntos
Técnicas Biossensoriais/instrumentação , Adesão Celular/fisiologia , Movimento Celular/fisiologia , Condutometria/instrumentação , Eletrodos , Fibroblastos/fisiologia , Fagocitose/fisiologia , Separação Celular/instrumentação , Células Cultivadas , Sistemas Computacionais , Impedância Elétrica , Desenho de Equipamento , Análise de Falha de Equipamento , Fibroblastos/citologia , Humanos , Campos Magnéticos
9.
Biosens Bioelectron ; 36(1): 116-22, 2012.
Artigo em Inglês | MEDLINE | ID: mdl-22560105

RESUMO

The uptake of large particles by cells (phagocytosis) is an important factor in cell biology and also plays a major role in biomedical applications. So far, most methods for determining the phagocytic properties rely on cell-culture incubation and end-point detection schemes. Here, we present a lab-on-a-chip system for real-time monitoring of magnetic particle uptake by human fibroblast (NHDF) cells. It is based on recording the time evolution of the average position and distribution of magnetic particles during phagocytosis by giant-magnetoresistive (GMR) type sensors. We employ particles with a mean diameter of 1.2 µm and characterize their phagocytosis-relevant properties. Our experiments at physiological conditions reveal a cellular uptake rate of 45 particles per hour and show that phagocytosis reaches saturation after an average uptake time of 27.7h. Moreover, reference phagocytosis experiments at 4°C are carried out to mimic environmental or disease related inhibition of the phagocytic behavior, and our measurements clearly show that we are able to distinguish between cell-membrane adherent and phagocytosed magnetic particles. Besides the demonstrated real-time monitoring of phagocytosis mechanisms, additional nano-biointerface studies can be realized, including on-chip cell adhesion/spreading as well as cell migration, attachment and detachment dynamics. This versatility shows the potential of our approach for providing a multifunctional platform for on-chip cell analysis.


Assuntos
Nanopartículas de Magnetita/química , Técnicas Analíticas Microfluídicas , Fagocitose/fisiologia , Técnicas Biossensoriais , Linhagem Celular , Fibroblastos/citologia , Fibroblastos/metabolismo , Humanos , Técnicas Analíticas Microfluídicas/métodos
10.
Biotechnol Bioeng ; 88(7): 909-15, 2004 Dec 30.
Artigo em Inglês | MEDLINE | ID: mdl-15532038

RESUMO

The presence of a plasmid, containing gene sequences for DNA immunotherapy that are not expressed in microbial culture, imposed a degradation in bioreactor performance in cultures of the host E. coli strain. Significant decreases in growth rate (24%) and biomass yield (7%) and a corresponding increase in overflow metabolism were observed in a strain containing a therapeutic sequence (a hepatitis B antigen under the control of a CMV promotor). The observed increase in overflow metabolism was incorporated into a Metabolic Flux Analysis (MFA) model (as acetate secretion). Metabolic flux analysis revealed an increase in TCA cycle flux, consistent with an increased respiration rate observed in plasmid-containing cells. These effects are thought to result from increased ATP synthesis requirements (24%) arising from the expression of the Kanr plasmid marker gene whose product accounted for 18% of the cell protein of the plasmid-containing strain. These factors will necessitate significantly higher aeration and agitation rates or lower nutrient feed rates in high-density cultures than would be expected for plasmid-free cultures.


Assuntos
Escherichia coli/genética , Escherichia coli/metabolismo , Regulação Bacteriana da Expressão Gênica/fisiologia , Antígenos da Hepatite B/genética , Modelos Biológicos , Plasmídeos/genética , Plasmídeos/metabolismo , Sequência de Bases , Simulação por Computador , Proteínas de Escherichia coli/genética , Proteínas de Escherichia coli/metabolismo , Terapia Genética/métodos , Cinética , Dados de Sequência Molecular
11.
SAR QSAR Environ Res ; 14(5-6): 321-8, 2003.
Artigo em Inglês | MEDLINE | ID: mdl-14758976

RESUMO

Web-based tools offer many advantages for processing chemical information, most notably ease of use and high interactivity. Therefore more and more pharmaceutical companies are using web technology to deliver sophisticated molecular processing tools directly to the desks of their chemists, to assist them in the process of designing and developing new drugs. In this paper, the web-based cheminformatics system developed at Novartis and currently used by more than thousand users is described. The system allows various molecular modeling and molecular processing tasks, including the calculation of molecular and substituent properties, property-based virtual screening, visualization of molecules, bioisosteric design, diversity analysis, and support of combinatorial chemistry. The methodology to calculate various molecular properties relevant to drug design is described, including the prediction of intestinal absorption, blood-brain barrier penetration, efflux, and water solubility. Information about the web technology used is also provided.


Assuntos
Desenho de Fármacos , Indústria Farmacêutica , Internet , Informática Médica , Modelos Moleculares , Humanos , Relação Quantitativa Estrutura-Atividade , Interface Usuário-Computador
12.
Anal Chem ; 73(17): 4241-8, 2001 Sep 01.
Artigo em Inglês | MEDLINE | ID: mdl-11569815

RESUMO

Rapid identification of bacterial strains remains a well-known problem in applied medicine and, for viable pathogens, is an important diagnostic goal. We have investigated an electrochemical biosensor array, in which transduction is based on respiratory cycle activity measurements, where the microorganism's native respiratory chain is interrupted with non-native external oxidants. The selective biochemical recognition agents employed in this study are lectins that, once immobilized, recognize and bind to cell surface lipopolysaccharides. Porous membranes with different surface properties were examined as potential immobilization supports for these lectins. Optimizations performed using concanavalin A and E. coli JM105 show that immobilization methods involving pre-activated membranes significantly reduce the time required to create a functional lectin layer on the membrane surface. Overall, we found general agreement between agglutination test results and the electrochemical assessment of lectin-cell binding. Chronocoulometric measurements were made for cells captured on lectin-modified Immunodyne ABC membranes physically affixed to Pt working electrodes. This lectin-based sensor array was exposed to viable cells of gram-negative and gram-positive bacteria as well as yeast, and chronocoulometric measurements were used to generate a pattern of responses for each organism toward each lectin. Principal component analysis was used to classify the chronocoulometric results for the different microbial strains. With this new method, six microbial species (Baccilus cereus, Staphylococcus aureus, Proteus vulgaris, Escherichia coli, Enterobacter aerogenes, Saccharomyces cerevisiae) were readily distinguished.


Assuntos
Bactérias/química , Lectinas/química , Lipopolissacarídeos/química , Animais , Técnicas Biossensoriais , Reagentes de Ligações Cruzadas , Eletroquímica
13.
J Chem Inf Comput Sci ; 41(1): 196-201, 2001.
Artigo em Inglês | MEDLINE | ID: mdl-11206374

RESUMO

Histidinol dehydrogenase (HDH) is one of the enzymes involved in the L-histidine biosynthesis pathway. HDH is a dimer that contains one Zn2+ ion in each identical subunit. In this study, we predicted a possible binding conformation of the intermediate L-histidinal, which is experimentally not known, using a computational modeling method and three potent HDH inhibitors whose structures are similar to that of L-histidinal. At first, a set of the most probable active conformations of the potent inhibitors was determined using two different pharmacophore mapping techniques, the active analogue approach and the distance comparison method. From the most probable active conformations of the three potent inhibitors, the common parts of the L-histidinal structure were extracted and refined by energy minimization to obtain the binding conformation of L-histidinal. This predicted conformation of L-histidinal agrees with an experimentally determined conformation of L-histidine in a single crystal, suggesting that it is an experimentally acceptable conformation. The capability in this conformation to coordinate a Zn2+ ion was examined by comparing the spatial relative geometry of its functional groups with those of ligands that coordinate with a Zn2+ ion in Zn proteins of the Protein Data Bank. This comparison supported our predicted conformation.


Assuntos
Oxirredutases do Álcool/metabolismo , Histidinol/análogos & derivados , Histidinol/metabolismo , Modelos Químicos , Oxirredutases do Álcool/antagonistas & inibidores , Oxirredutases do Álcool/química , Ligação Proteica , Conformação Proteica
14.
J Med Chem ; 43(20): 3714-7, 2000 Oct 05.
Artigo em Inglês | MEDLINE | ID: mdl-11020286

RESUMO

Molecular polar surface area (PSA), i.e., surface belonging to polar atoms, is a descriptor that was shown to correlate well with passive molecular transport through membranes and, therefore, allows prediction of transport properties of drugs. The calculation of PSA, however, is rather time-consuming because of the necessity to generate a reasonable 3D molecular geometry and the calculation of the surface itself. A new approach for the calculation of the PSA is presented here, based on the summation of tabulated surface contributions of polar fragments. The method, termed topological PSA (TPSA), provides results which are practically identical with the 3D PSA (the correlation coefficient between 3D PSA and fragment-based TPSA for 34 810 molecules from the World Drug Index is 0.99), while the computation speed is 2-3 orders of magnitude faster. The new methodology may, therefore, be used for fast bioavailability screening of virtual libraries having millions of molecules. This article describes the new methodology and shows the results of validation studies based on sets of published absorption data, including intestinal absorption, Caco-2 monolayer penetration, and blood-brain barrier penetration.


Assuntos
Estrutura Molecular , Preparações Farmacêuticas/química , Disponibilidade Biológica , Transporte Biológico , Modelos Moleculares , Preparações Farmacêuticas/metabolismo , Reprodutibilidade dos Testes
15.
Anal Chem ; 72(20): 4949-56, 2000 Oct 15.
Artigo em Inglês | MEDLINE | ID: mdl-11055714

RESUMO

Ferricyanide reduction was studied by flow injection analysis (FIA) and chronoamperometry (CA) using two host strains and one recombinant strain of E. coli. Samples taken from batch cultures of E. coli JM105 and HB101 showed maximal specific ferricyanide reduction rates in the late exponential phase of growth, with values (micromol/min x g) of 24 (FIA) and 17 (CA) for JM105, and 36 (FIA) for HB101, when shake-flask cultures were sampled, and 70 for HB101, when a chemostat was used to control pH and dissolved oxygen concentration throughout the cultivation. Remarkably higher ferricyanide reduction rates were obtained with HB101 cells cultivated continuously at very slow growth rate, when chilled, resuspended cell samples were incubated for 5 min in solutions containing 10 mM succinate or formate. These compounds are substrates for primary, membrane-bound dehydrogenases that transfer electrons via ubiquinone to the cytochrome oxidase complexes. Apparent Michaelis-Menten kinetics were observed with respect to ferricyanide concentration when 10 mM succinate was included in the assay buffer; apparent Km values of 10.1+/-0.6 mM and 14.4+/-1.2 mM ferricyanide were obtained for exponential- and stationary-phase E. coli JM105, respectively. Cyanide inhibition studies show that ferricyanide is reduced mainly by cytochrome o oxidase in exponentially growing cells. The large difference in ferricyanide reduction rates observed in the absence and presence of succinate and formate were used to signal stationary-phase entry 5 h after induction of recombinant human Cu/Zn superoxide dismutase expression in a batch fermentation of E. coli HMS174(DE3)(pET3ahSOD). This new method can be used as an adjunct to the quantitation of medium components for the optimization of recombinant fermentations.


Assuntos
Escherichia coli/química , Ferricianetos/química , Escherichia coli/genética , Fermentação , Humanos , Cinética , Oxirredução , Recombinação Genética
16.
Anal Chem ; 72(20): 4957-64, 2000 Oct 15.
Artigo em Inglês | MEDLINE | ID: mdl-11055715

RESUMO

Electrochemical measurement of respiratory chain activity allows rapid and reliable screening for antibiotic susceptibility in microorganisms. Chronoamperometry and chronocoulometry of suspensions of aerobically cultivated E. coli combined with the non-native oxidant potassium hexacyanoferrate(III) (ferricyanide) yield signals for reoxidation of the reduction product ferrocyanide that are much smaller if the E. coli has been incubated briefly with an effective antibiotic compound. Chronocoulometric results, obtained following 20-min incubation with antibiotic and 2-min measurement in assay buffer containing 50 mM ferricyanide and 10 mM succinate, at +0.50 V vs Ag/AgCl at a Pt working electrode, were compared with traditional disk diffusion susceptibility testing, which requires overnight incubation on agar plates; the results show significantly lower accumulation of ferrocyanide in all cases in which growth inhibition was observed in the disk diffusion assay. A range of antibiotic compounds (13) were examined that possess different mechanisms of action. Quantitative determination of IC50 values for penicillin G and chloramphenicol yielded values that were 100-fold higher than those obtained by standard turbidity methods after 10-h incubation; this is likely a result of the very brief (10 min) exposure time to the antibiotics. Addition of 5 microM 2,6-dichlorophenolindophenol, a hydrophobic electron-transfer mediator, to the assay mixture allowed susceptibility testing of a Gram-positive obligate anaerobe, Clostridium sporogenes. This rapid new assay will facilitate clinical susceptibility testing, allowing appropriate treatment virtually as soon as a clinical isolate can be obtained.


Assuntos
Antibacterianos/farmacologia , Clostridium/efeitos dos fármacos , Escherichia coli/efeitos dos fármacos , Ferricianetos/metabolismo , Testes de Sensibilidade Microbiana/métodos , Clostridium/metabolismo , Eletroquímica , Escherichia coli/metabolismo , Oxirredução
17.
Methods Mol Med ; 24: 171-82, 2000.
Artigo em Inglês | MEDLINE | ID: mdl-21331908

RESUMO

Herpesviruses encode a serine protease that is essential for the maturation of viral capsids (1,2). The protease is expressed as part of a polyprotein. The catalytic domain is contained within the N-terminal third of the protein, and the remainder comprises a structural "scaffold" protein. The scaffold protein is independently expressed in excess to the polyprotein from an internal initiation codon. The protease cleaves the polyprotein at two sites: one at the c-terminus of the protease catalytic domain, the release or R-site, and the other close to the c-terminus of the scaffold protein, the maturation or M-site (Fig. 1). Cleavage of the M-site follows assembly of the viral procapsids and precedes packaging of the viral DNA. The M-site sequence is conserved among the herpesviruses and has a consensus sequence (V/L)-X-A-S, with cleavage between A-S (3). Structural studies have shown that the herpesvirus proteases have a novel structure, and their essential role in capsid maturation makes them a potential target for antiviral intervention. Fig. 1. Cartoon illustration of the structure of the herpesvirus protease/scaffold polyprotein showing the position of the protease catalytic domain, the scafold protein, and the release and maturation cleavage sites.

18.
Bioorg Med Chem Lett ; 9(19): 2863-6, 1999 Oct 04.
Artigo em Inglês | MEDLINE | ID: mdl-10522707

RESUMO

A random screening approach has identified 2-chloro-3-substituted-1,4-naphthoquinones as potent inactivators of HCMV protease. Enzyme inactivation is due to modification of Cys202. Two of the most potent compounds maintain activity against HCMV in a plaque reduction assay.


Assuntos
Naftoquinonas/síntese química , Serina Endopeptidases/metabolismo , Inibidores de Serina Proteinase/síntese química , Sítios de Ligação , Linhagem Celular , Cisteína/química , Glutationa/química , Humanos , Elastase de Leucócito/metabolismo , Estrutura Molecular , Naftoquinonas/farmacologia , Inibidores de Serina Proteinase/farmacologia , Trombina/metabolismo , Ensaio de Placa Viral
19.
J Mol Graph Model ; 16(1): 11-3, 36, 1998 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-9783255

RESUMO

Easy to use, interactive, and platform-independent WWW-based tools are ideal for development of chemical applications. By using the newly emerging Web technologies such as Java applets and sophisticated scripting, it is possible to deliver powerful molecular processing capabilities directly to the desk of synthetic organic chemists. In Novartis Crop Protection in Basel, a Web-based molecular modelling system has been in use since 1995. In this article two new modules of this system are presented: a program for interactive calculation of important hydrophobic, electronic, and steric properties of organic substituents, and a module for substituent similarity searches enabling the identification of bioisosteric functional groups. Various possible applications of calculated substituent parameters are also discussed, including automatic design of molecules with the desired properties and creation of targeted virtual combinatorial libraries.


Assuntos
Química Orgânica , Internet , Modelos Moleculares , Software , Gráficos por Computador , Desenho de Fármacos , Modelos Químicos , Estrutura Molecular , Fenômenos de Química Orgânica
20.
Antimicrob Agents Chemother ; 39(8): 1802-8, 1995 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-7486922

RESUMO

The activity, metabolism, and mode of action of (R)-9-[4-hydroxy-2-(hydroxymethyl)butyl]guanine (H2G) against herpes simplex virus type 1 (HSV-1) and type 2 (HSV-2) and varicella-zoster virus (VZV) were studied. Compared to acyclovir (ACV), H2G has superior activity against VZV (50% inhibitory concentration of 2.3 microM) and Epstein-Barr virus (50% inhibitory concentration of 0.9 microM), comparable activity against HSV-1, and weaker activity against HSV-2. The antiviral effect on HSV-1 showed persistence after removal of compound. H2G was metabolized to its mono-, di- and triphosphate derivatives in virus-infected cells, with H2G-triphosphate being the predominant product. Only small amounts of H2G-triphosphate were detected in uninfected cells (1 to 10 pmol/10(6) cells), whereas the level in HSV-1-infected cells reached 1,900 pmol/10(6) cells. H2G was a substrate for all three viral thymidine kinases and could also be phosphorylated by mitochondrial deoxyguanosine kinase. The intracellular half-life of H2G-triphosphate varied in uninfected (2.5 h) and infected (HSV-1, 14 h; VZV, 3.7 h) cells but was always longer than the half-life of ACV-triphosphate (1 to 2 h). H2G-triphosphate inhibited HSV-1, HSV-2, and VZV DNA polymerases competitively with dGTP (Ki of 2.8, 2.2, and 0.3 microM, respectively) but could not replace dGTP as a substrate in a polymerase assay. H2G was not an obligate chain terminator but would only support limited DNA chain extension. Only very small amounts of radioactivity, which were too low to be identified by high-performance liquid chromatography analysis of the digested DNA, could be detected in purified DNA from uninfected cells incubated with [3H]H2G. Thus, H2G acts as an anti-herpesvirus agent, particularly potent against VZV, by formation of high concentrations of relatively stable H2G-triphosphate, which is a potent inhibitor of the viral DNA polymerases.


Assuntos
Antivirais/farmacologia , Guanina/análogos & derivados , Herpesviridae/efeitos dos fármacos , Antivirais/metabolismo , Sequência de Bases , Sobrevivência Celular/efeitos dos fármacos , Células Cultivadas , Cromatografia Líquida de Alta Pressão , DNA Viral/análise , Guanina/metabolismo , Guanina/farmacologia , Herpesviridae/enzimologia , Herpesvirus Humano 1/efeitos dos fármacos , Herpesvirus Humano 1/enzimologia , Herpesvirus Humano 2/efeitos dos fármacos , Herpesvirus Humano 2/enzimologia , Herpesvirus Humano 3/efeitos dos fármacos , Herpesvirus Humano 3/enzimologia , Humanos , Cinética , Dados de Sequência Molecular , Inibidores da Síntese de Ácido Nucleico , Fosforilação , Timidina Quinase/metabolismo
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