Complete genome sequences of two avian pathogenic Escherichia coli strains isolated from broilers exhibiting colibacillosis in Mississippi.

We report the whole-genome sequences of Escherichia coli strains APEC-O2-MS1266 and APEC-O2-MS1657 isolated from the liver and heart of infected broilers in Mississippi State, US. The genomic information of these two causative strains may provide a valuable reference for comparative studies of avian pathogenic E. coli.

Avian Pathogenic Escherichia coli (APEC) in Broiler Breeders: An Overview.

Poultry meat is one of the major animal protein sources necessary to meet the global protein demand. Sustainability in broiler production is the key to achieving its continuous supply, and broiler breeders play a critical role in maintaining this sustainability by providing good quality chicks. Colibacillosis, the disease caused by avian pathogenic Escherichia coli (APEC), causes severe economic losses to the poultry industry globally. Moreover, APEC causes an additional burden among broiler breeders, such as a decrease in egg production and mortality among these birds. There is vertical transmission of APEC to the broiler chicks through eggs, resulting in increased first-week mortality and subsequent horizontal transmission at the hatchery. In this regard, the vertical transmission of antibiotic resistance genes is another concern that needs attention. Controlling several diseases in broiler breeders would possibly reduce the first-week mortality in chicks, thereby maintaining the production level. For that, constant monitoring of the bacterial populations is critical. Moreover, amidst the increased antibiotic resistance pattern, more focus on alternative treatment strategies like vaccines, probiotics, and bacteriophages is necessary. Future research focusing on strategies to mitigate APEC in broiler breeders would be one of the finest solutions for sustainable broiler production.

Effect of Ultraviolet Radiation on Reducing Airborne Escherichia coli Carried by Poultry Litter Particles.

Airborne Escherichia coli (E. coli) originating in poultry houses can be transmitted outside poultry farms through the air, posing risks of barn-to-barn infection through airborne transmission. The objective of this study is to examine the effect of ultraviolet (UV) light on the inactivation of airborne E. coli carried by poultry dust particles under laboratory conditions. A system containing two chambers that were connected by a UV scrubber was designed in the study. In the upstream chamber of the system, airborne E. coli attached to dust particles were aerosolized by a dry aerosolization-based system. Two sets of air samplers were placed in the two chambers to collect the viable airborne E. coli. By comparing the concentration of airborne E. coli in the two chambers, the inactivation rates were calculated. The airborne E. coli inactivation rates were tested at different contact times with the aid of a vacuum pump (from 5.62 to 0.23 s of contact time) and different UV irradiance levels (of 1707 µW cm-2 and 3422 µW cm-2). The inactivation rates varied from over 99.87% and 99.95% at 5.62 s of contact time with 1707 µW cm-2 and 3422 µW cm-2 of UV irradiance to 72.90% and 86.60% at 0.23 s of contact time with 1707 µW cm-2 and 3422 µW cm-2 of UV irradiance. The designed system was able to create the average UV irradiation of 1707 µW cm-2 and 3422 µW cm-2 for one UV lamp and two UV lamps, respectively. The findings of this study may provide an understanding of the effect of UV light on the inactivation of airborne E. coli carried by dust particles and help to design an affordable mitigation system for poultry houses.

Survival of Escherichia coli in Airborne and Settled Poultry Litter Particles.

Airborne Escherichia coli (E. coli) in the poultry environment can migrate inside and outside houses through air movement. The airborne E. coli, after settling on surfaces, could be re-aerosolized or picked up by vectors (e.g., caretakers, rodents, transport trucks) for further transmission. To assess the impacts of airborne E. coli transmission among poultry farms, understanding the survivability of the bacteria is necessary. The objective of this study is to determine the survivability of airborne E. coli, settled E. coli, and E. coli in poultry litter under laboratory environmental conditions (22-28 °C with relative humidity of 54-63%). To determine the survivability of airborne E. coli, an AGI-30 bioaerosol sampler (AGI-30) was used to collect the E. coli at 0 and 20 min after the aerosolization. The half-life time of airborne E. coli was then determined by comparing the number of colony-forming units (CFUs) of the two samplings. To determine the survivability of settled E. coli, four sterile Petri dishes were placed on the chamber floor right after the aerosolization to collect settled E. coli. The Petri dishes were then divided into two groups, with each group being quantified for culturable E. coli concentrations and dust particle weight at 24-h intervals. The survivability of settled E. coli was then determined by comparing the number of viable E. coli per milligram settled dust collected in the Petri dishes in the two groups. The survivability of E. coli in the poultry litter sample (for aerosolization) was also determined. Results show that the half-life time of airborne E. coli was 5.7 ± 1.2 min. The survivability of E. coli in poultry litter and settled E. coli were much longer with the half-life time of 15.9 ± 1.3 h and 9.6 ± 1.6 h, respectively. In addition, the size distribution of airborne E. coli attached to dust particles and the size distribution of airborne dust particles were measured by using an Andersen impactor and a dust concentration monitor (DustTrak). Results show that most airborne E. coli (98.89% of total E. coli) were carried by the dust particles with aerodynamic diameter larger than 2.1 µm. The findings of this study may help better understand the fate of E. coli transmitted through the air and settled on surfaces and evaluate the impact of airborne transmission in poultry production.

Evaluating the Effects of Pine and Miscanthus Biochar on Escherichia coli, Total Aerobic Bacteria, and Bacterial Communities in Commercial Broiler Litter.

Escherichia coli (E. coli) is a commensal bacteria found in the gastrointestinal tract of poultry; however, some strains are pathogenic and can cause a wide range of diseases. In addition, some strains of pathogenic E. coli can survive in the litter between flocks, making litter management critical for reducing E. coli-associated infections. Biochar (BC) is a porous, carbonaceous material that may be a beneficial litter amendment to reduce moisture and microbial loads. The objectives of this study were to evaluate the effects of pine BC, miscanthus BC, and Poultry Litter Treatment (PLT) on E. coli, total aerobic bacteria populations, and bacterial communities when added to used broiler litter. Pine and miscanthus BC were mixed into poultry litter at inclusion rates of 5%, 10%, 20%, 25%, and 30% w/w. PLT was surface applied at a rate of 0.73 kg/m2. Baseline E. coli and aerobics were measured after a 48-hr litter incubation period and just prior to adding litter treatments. Escherichia coli and aerobics were enumerated 2 and 7 days after adding treatments. Overall, pine BC at 30% had the lowest E. coli and aerobic counts (5.98 and 6.44 log 10 colony-forming units [CFU]/g, respectively); however, they were not significantly different from the control (P ≤ 0.05). At day 2, 30% pine BC inclusion rate treatment resulted in a significant reduction in E. coli and aerobic bacteria counts compared to the control. Miscanthus BC application did not result in significant reductions in E. coli or aerobic bacteria at days 2 or 7. PLT had the highest E. coli (7.07 log 10 CFU/g) and aerobic counts (7.21 log 10 CFU/g) overall. Bacterial community analysis revealed that the alpha and beta diversity between pine BC- and PLT-treated litter were significantly different. However, neither BC type significantly impacted bacterial diversity when compared to the control. Differences in E. coli and aerobic counts between BC types may be attributed to variations in feedstock physiochemical properties.

Evaluación de los efectos del biocarbón de pino y de miscanto sobre Escherichia coli, bacterias aerobias totales y comunidades bacterianas en la cama comercial de pollos de engorde. Escherichia coli (E. coli) es una bacteria comensal que se encuentra en el tracto gastrointestinal de las aves comerciales; sin embargo, algunas cepas son patógenas y pueden causar una amplia variedad de enfermedades. Además, algunas cepas de E. coli patógena pueden sobrevivir en la cama entre parvadas, lo que hace que el manejo de la cama sea fundamental para reducir las infecciones asociadas con E. coli. El biocarbón (BC) es un material carbonoso poroso que puede ser un aditivo beneficioso en la cama para reducir la humedad y las cargas microbianas. Los objetivos de este estudio fueron evaluar los efectos del biocarbón de pino, de miscanthus y de un producto comercial para el tratamiento de la cama en avicultura (PLT) sobre E. coli, sobre poblaciones de bacterias aeróbicas totales y comunidades bacterianas cuando se agregan a la cama de pollos de engorde usada. Se mezclaron biocarbón de pino y miscanthus en la cama de aves de corral con tasas de inclusión por peso del 5 %, 10 %, 20 %, 25 % y 30 %. Se aplicó el producto PLT en la superficie a razón de 0.73 kg/m2. La E. coli y los aeróbicos de referencia se midieron después de un período de incubación de la cama de 48 horas y justo antes de agregar los tratamientos de la cama. Se enumeraron Escherichia coli y bacterias aeróbicas 2 y 7 días después de agregar los tratamientos. En general, el biocarbón de pino al 30 % tuvo los recuentos más bajos de E. coli y aeróbicos (5.98 y 6.44 log10 unidades formadoras de colonias [UFC]/g, respectivamente); sin embargo, no fueron significativamente diferentes del control (P ≤ 0.05). En el día 2, el tratamiento con una tasa de inclusión de biocarbón de pino al 30 % dio como resultado una reducción significativa en los recuentos de bacterias aeróbicas y E. coli en comparación con el control. La aplicación de biocarbón de miscanto no resultó en reducciones significativas de E. coli o bacterias aeróbicas en los días 2 o 7. El producto PLT tuvo los recuentos más altos de E. coli (7.07 log10 CFU/g) y aeróbicos en general (7.21 log10 CFU/g). El análisis de la comunidad bacteriana reveló que la diversidad alfa y beta entre la cama tratada con biocarbón de pino y producto PLT era significativamente diferente. Sin embargo, ninguno de los tipos de biocarbón afectó significativamente la diversidad bacteriana en comparación con el control. Las diferencias en los recuentos de E. coli y de bacterias aeróbicas entre los tipos de biocarbón pueden atribuirse a variaciones en las propiedades fisicoquímicas de la materia prima.

Transcriptomic analysis of early B-cell development in the chicken embryo.

The chicken bursa of Fabricius is a primary lymphoid tissue important for B-cell development. Our long-term goal is to understand the role of bursal microenvironment in an early B-cell differentiation event initiating repertoire development through immunoglobulin gene conversion in the chick embryo. We hypothesize that early bursal B-cell differentiation is guided by signals through cytokine receptors. Our theory is based on previous evidence for expression of the receptor tyrosine kinase superfamily members and interleukin receptors in unseparated populations of bursal B-cells and bursal tissue. Knowledge of the expressed genes that are responsible for B-cell differentiation is a prerequisite for understanding the bursal microenvironment's function. This project uses transcriptomic analysis to evaluate gene expression across early B-cell development. RNA-seq was performed with total RNA isolated from bursal B-cells at embryonic day (ED) 16 and ED 19 (n = 3). Approximately 90 million high-quality clean reads were obtained from the cDNA libraries. The analysis revealed differentially expressed genes involved in the Jak-STAT pathway, Wnt signaling pathway, MAPK signaling pathway, metabolic pathways including tyrosine metabolism, Toll-like receptor signaling pathway, and cell-adhesion molecules. The genes predicted to encode surface receptors, signal transduction proteins, and transcription factors identified in this study represent gene candidates for controlling B-cell development in response to differentiation factors in the bursal microenvironment.

Effects of different vaccine combinations against Mycoplasma gallisepticum on blood characteristics in commercial layer chickens.

Mycoplasma gallisepticum (MG) is a major and economically significant pathogen of avian species. When administered before lay, F-strain MG (FMG) can reduce egg production during lay, but the ts-11 strain of MG (ts11MG) does not exert this effect. Two trials were conducted to determine the effects of pre-lay vaccinations of ts11MG, MG-Bacterin (MGBac), or their combination, in conjunction with an FMG challenge overlay after peak production on the blood characteristics of commercial layers. In each trial, 160 mycoplasma-free Hy-Line W-36 layers were housed in negative-pressure biological isolation units (4 units per treatment, 10 birds per unit) from 9 through 52 wk of age (woa). The following vaccination treatments were administered at 10 woa: 1) Control (no vaccinations); 2) MGBac; 3) ts11MG; and 4) ts11MG and MGBac combination (ts11MG+MGBac). At 45 woa, half of the birds were challenged with a laboratory stock of high-passage FMG. Parameters measured in both trials were whole-blood hematocrit and serum concentrations of cholesterol (SCHOL), triglycerides, calcium, and total protein (STP). An age×treatment interaction (P=0.04) was observed for STP between 23 and 43 woa. The STP concentration in the ts11MG and ts11MG+MGBac groups was higher at 33 woa, but was lower at 43 woa, in comparison to the Control group. Also, at 38 woa, the STP of the ts11MG+MGBac group was higher than that of the MGBac group. Although use of the ts11MG vaccine alone or in combination with MGBac may influence circulating STP concentrations when administered before lay, it remains effective in protecting layers against the adverse effect of a post-peak challenge of FMG on egg production, as was observed in a previous companion study.