A comparative analysis of TCR immune repertoire in COVID-19 patients.

The coronavirus disease 2019 (COVID-19) has merged as a global health threat since its outbreak in December 2019. Despite widespread recognition, there has been a paucity of studies focusing on the T cell receptor (TCR) bias in adaptive immunity induced by SARS-CoV-2. This research conducted a comparative analysis of the TCR immune repertoire to identify notable αß TCR bias sequences associated with the SARS-CoV-2 virus antigen. The present study encompassed 73 symptomatic COVID-19 patients, categorized as moderate/mild or severe/critical, along with 9 healthy controls. Our findings revealed specific TCR chains prominently utilized by moderate and severe patients, identified as TRAV30-J34-TRBV3-1-J2-7 and TRAV12-3-J6-TRBV28-J1-1, respectively. Additionally, our research explored critical TCR preferences in the bronchoalveolar lavage fluid (BALF) of COVID-19 patients at various disease stages. Indeed, monitoring the dynamics of immune repertoire changes in COVID-19 patients could serve as a crucial biomarker for predicting disease progression and recovery. Furthermore, the study explored TCR bias in both peripheral blood mononuclear cells (PBMCs) and BALF. The most common αß VJ pair observed in BALF was TRAV12-3-J18-TRBV7-6-J2-7. In addition, a comparative analysis with the VDJdb database indicated that the HLA-A*02:01 allele exhibited the widest distribution and highest frequency in COVID-19 patients across different periods. This comprehensive examination provided a global characterization of the TCR immune repertoire in COVID-19 patients, contributing significantly to our understanding of TCR bias induced by SARS-CoV-2.

Intra-annual stem radial growth of Qinghai spruce and its environmental drivers in the Qilian Mountains, northwestern China.

Tree stem radial growth could be used to estimate forest productivity, which plays a dominant role in the carbon sink of terrestrial ecosystems. However, it is still obscure how intra-annual stem radial growth is regulated by environmental variables. Here, we monitored Qinghai spruce stem radial growth over seven years and analyzed the environmental drivers of the intra-annual stem radial changes in the Qilian Mountains at low (2700 m) and high altitudes (3200 m). We found that stem radial growth initiated when the daily mean minimum air temperature reached 1.6oC, while the cessation of stem growth was unrelated to temperatures and water conditions. Initiations of stem growth at 2700 m were significantly earlier than that at 3200 m. Maximum growth rates were observed before the summer solstice at low altitude, whereas at high altitude, the majority of them occurred after the summer solstice. Most variability in annual stem increment (AI) can be explained by the rate (Rm) than by the duration of stem growth (∆t), and 78.9 % and 69.6 % of the variability in AI were attributable to Rm for the lower and upper site, respectively. Structural equation modeling revealed that precipitation (P) could both directly positively influence stem radial increment (SRI) and indirectly positively influence SRI through influencing relative humidity (RH), but the positive effect of P on SRI was higher at low altitude than at high altitude. Daily minimum air temperature (Tmin) was also the main direct diver of SRI, and the positive effect of Tmin on SRI was higher at high altitude than at low altitude. Considering the trends in climate warming and humidification over the past decades, climate changes would result in earlier initiation of Qinghai spruce stem growth and promote the growth through positive response to increased precipitation in low altitude and through elevated temperature in high altitude, respectively.

Molecular characteristics of Staphylococcus aureus strains isolated from subclinical mastitis of water buffaloes in Guangdong Province, China.

Intramammary infections (IMI) in animals reared for milk production can result in large economic losses and distress to the animals. Staphylococcus aureus is an important causative agent of IMI in dairy cows, but its prevalence in water buffaloes has not been determined. Therefore, the current study was conducted to investigate the prevalence of subclinical mastitis in water buffaloes and the antimicrobial susceptibility, virulence genes and biofilm formation abilities of Staphylococcus aureus isolates recovered from water buffaloes in Guangdong, China. Staphylococcus aureus strains were isolated from milk samples of water buffaloes with subclinical mastitis, and twofold microdilution, PCR and crystal violet staining methods were used to determine antimicrobial susceptibility, distributions of virulence and antimicrobial resistance genes and biofilm formation ability, respectively. Our results indicated that 29.44% of water buffaloes were diagnosed with subclinical mastitis, and the most prevalent pathogens were Escherichia coli (96.17%), coagulase-negative staphylococci (CoNS) (67.60%) and S. aureus (28.57%). Most S. aureus isolates showed resistance to bacitracin, doxycycline, penicillin, florfenicol, and tetracycline but were susceptible to ciprofloxacin, ceftizoxime, cefoquinoxime, and ofloxacin. Moreover, 63.72% of S. aureus isolates were positive for tetM, and the prevalence of msrB, blaZ, mecA, fexA, and tetK ranged from 21.24 to 6.19%. All S. aureus isolates harbored clfB and icaA genes, and the virulence genes hla (93.8%), hld (91.15%), clfA (90.27%), fnbA (86.73%), and hlb (83.19%), and tsst, icaD, sec, see, fnbB, and sea showed a varied prevalence ranging from 3.5 to 65.49%. All S. aureus isolates possessed the ability to form biofilms, and 30.09% of isolates showed strong biofilm formation abilities, while 19.47% of isolates were weak biofilm producers. Our results indicated that subclinical mastitis is prevalent in water buffaloes in Guangdong, China, and S. aureus is prevalent in samples from water buffaloes with subclinical mastitis. Most S. aureus isolates were susceptible to cephalosporins and fluoroquinolones; thus, ceftizoxime and cefoquinoxime can be used to treat subclinical mastitis in water buffaloes.

The limiting effect of genome size on xylem vessel diameter is shifted by environmental pressures in seed plants.

Current and previous studies have extensively studied the physiological and ecological consequences of genome size (GS) on plants because of the limiting effect of GS on cell size. However, it is still obscure whether such limiting effect could be shifted by environmental pressures, or not. Here, we compiled a global dataset comprised of GS, xylem vessel diameter (V dia), xylem hydraulic conductivity (K S), P 50 (xylem water potential at the loss of 50% maximum K S), and climate factors of 251 phylogeny and habitat divergent species from 59 families. The results showed that GS could limit the V dia of the species from the same family sampled in the similar climate conditions. But the expected positive relationship between GS and V dia became uncertain and even negative across different environmental conditions. V dia was strongly positively coordinated with mean annual temperature (MAT), mean annual precipitation (MAP), and potential evapotranspiration (PET). Furthermore, V dia as the anatomic foundation of plant hydraulic performance was strongly positively coordinated with K S and negatively coordinated with -P 50. The strong environmental selection on K S and P 50 explained the concerted regulation of V dia by environmental factors. The findings revealed the combined regulation of GS and environmental pressures on xylem cell size and thus affected plant eco-physiological performance. The shifted cell size limiting effect of GS by environmental factors manifests plants great plasticity under changed environmental conditions.

Leaf water potential-dependent leaflet closure contributes to legume leaves cool down and drought avoidance under diurnal drought stress.

Efficient thermoregulation under diurnal drought stress protects leaves from photosystem damage and water supply-demand imbalance, yet the cool effect and drought avoidance by leaflet closure have not been well understood. We investigated the cool effect and the drought avoidance of leaflet closure in legume species that survived in the semi-arid region facing seasonal and diurnal drought stress. The results showed that leaflet closure effectively cooled down legume leaves through a reduction of projected leaflet area and the cosine of the angle of incidence (cos i). The leaflet closure was strongly dependent on leaf water potential (Ψleaf). In addition, by characterizing the sequence of key leaf drought response traits, we found leaflet closure occurred after stomatal closure and reduced transpiration rate but before hydraulic failure and turgor loss point (Ψtlp). The meta-analysis also showed that the leaflet closure and cos i decreased after the stomatal conductance declined but before midday. These results imply that Ψleaf-dependent leaflet closure as an alternative to transpiration for leaflet cooling down and as a protective drought avoidance strategy assisting sessile legume plants survival under drought stress.

[Long-term follow-up of malignant clonal evolution in patients with acquired aplastic anemia].

OBJECTIVE: To assess the incidence and risk factors for evolution of acquired aplastic anemia (AA) into myelodysplastic syndrome/acute myeloid leukemia (MDS/AML). METHOD: A total of 1003 AA patients hospitalized in our institute hospital between January 1991 and December 2009 enrolled into this study. The incidence and risk factors for AA developing MDS/AML by the Kaplan-Meier method and Cox proportional hazards models, respectively. RESULTS: The median follow-up was 62 (2 - 423) months and the projected 5-year survival rate was (78.0 +/- 1.0)%. Twenty-seven patients evolved to MDS/AML, of whom 11, 6 and 10 were from NSAA, SAA and VSAA subgroups, respectively. The estimated cumulative incidence of MDS/AML transformation for these 1003 patients after diagnosis was (4.5 +/- 1.0)% at 10 year. The incidence of MDS/AML transformation in VSAA subgroup [(12.8 +/- 3.5)%] was significantly higher than in NSAA subgroup [(4.1 +/- 1.9)%] (P < 0.001) and SAA subgroup [(3.5 +/- 1.4)% ] (P = 0.008), but no difference between the latter two subgroups (P = 0.616). Age [RR = 3.527 (95% CI: 1.598 - 7.784), P = 0.002], severity of disease [RR = 5.122 (95% CI: 2.214 - 11.853), P < 0.001], the duration (days) of rhuG-CSF therapy [RR = 10.782 (95% CI: 4.600 - 25.269), P < 0.001] and exposure to ray, chemicals or drugs [RR = 3.401 (95% CI: 1.535 - 7.534), P = 0.003] were risk factors for the transformation in both univariate and multivariate analyses. CONCLUSION: Long-term follow-up is essential to assess the incidence and risk factors for evolutions of acquired AA into MDS/AML, and to administer salvage therapy for transformation in time during follow-up.