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1.
Methods Mol Biol ; 2665: 191-201, 2023.
Artigo em Inglês | MEDLINE | ID: mdl-37166602

RESUMO

Hydroponic-based systems for plant growth allow control of the nutrients that plants take up through the provided nutrient solution. Different formulations of nutrient solutions enable the study of nutrient deficiencies in plants. Here we describe a procedure for setting up a simple semi-hydroponic system to grow maize seedlings. The system can be set up on a small or large scale, depending on the number of individuals studied. A modified nutrient solution is used for growing maize seedlings in iron-replete and iron-depleted conditions. This setup allows for studies of iron-deficiency responses in maize.


Assuntos
Deficiências de Ferro , Zea mays , Humanos , Hidroponia , Ferro , Plântula , Homeostase
2.
Acta Crystallogr D Struct Biol ; 79(Pt 5): 374-386, 2023 May 01.
Artigo em Inglês | MEDLINE | ID: mdl-37039669

RESUMO

The polymorphism of human insulin upon pH variation was characterized via X-ray powder diffraction, employing a crystallization protocol previously established for co-crystallization with phenolic derivatives. Two distinct rhombohedral (R3) polymorphs and one cubic (I213) polymorph were identified with increasing pH, corresponding to the T6, T3R3f and T2 conformations of insulin, respectively. The structure of the cubic T2 polymorph was determined via multi-profile stereochemically restrained Rietveld refinement at 2.7 Šresolution. This constitutes the first cubic insulin structure to be determined from crystals grown in the presence of zinc ions, although no zinc binding was observed. The differences of the polycrystalline variant from other cubic insulin structures, as well as the nature of the pH-driven phase transitions, are discussed in detail.


Assuntos
Insulina Regular Humana , Insulina , Humanos , Insulina/química , Difração de Raios X , Fenóis , Cristalização
3.
Mol Plant ; 2022 Oct 27.
Artigo em Inglês | MEDLINE | ID: mdl-36307980
4.
Acta Crystallogr A Found Adv ; 77(Pt 3): 186-195, 2021 May 01.
Artigo em Inglês | MEDLINE | ID: mdl-33944797

RESUMO

Advances in instrumentation, as well as the development of powerful crystallographic software have significantly facilitated the collection of high-resolution diffraction data and have made X-ray powder diffraction (XRPD) particularly useful for the extraction of structural information; this is true even for complex molecules, especially when combined with synchrotron radiation. In this study, in-line with past instrumental profile studies, an improved data collection strategy exploiting the MYTHEN II detector system together with significant beam focusing and tailored data collection options was introduced and optimized for protein samples at the Material Science beamline at the Swiss Light Source. Polycrystalline precipitates of octreotide, a somatostatin analog of particular pharmaceutical interest, were examined with this novel approach. XRPD experiments resulted in high angular and d-spacing (1.87 Å) resolution data, from which electron-density maps of enhanced quality were extracted, revealing the molecule's structural properties. Since microcrystalline precipitates represent a viable alternative for administration of therapeutic macromolecules, XRPD has been acknowledged as the most applicable tool for examining a wide spectrum of physicochemical properties of such materials and performing studies ranging from phase identification to complete structural characterization.


Assuntos
Substâncias Macromoleculares/química , Octreotida/análise , Fótons , Cristalografia por Raios X , Difração de Pó
5.
Acta Crystallogr D Struct Biol ; 76(Pt 4): 366-374, 2020 Apr 01.
Artigo em Inglês | MEDLINE | ID: mdl-32254061

RESUMO

In this study, the first crystal structure of a novel crystal form of human insulin bound to meta-cresol in an acidic environment is reported. The combination of single-crystal and powder X-ray diffraction crystallography led to the detection of a previously unknown monoclinic phase (P21). The structure was identified from the powder patterns and was solved using single-crystal diffraction data at 2.2 Šresolution. The unit-cell parameters at pH 6.1 are a = 47.66, b = 70.36, c = 84.75 Å, ß = 105.21°. The structure consists of two insulin hexamers per asymmetric unit. The potential use of this insulin form in microcrystalline drugs is discussed.


Assuntos
Cresóis/química , Insulina/química , Cristalografia por Raios X , Humanos , Modelos Moleculares , Multimerização Proteica , Estrutura Quaternária de Proteína , Difração de Raios X
6.
Acta Crystallogr B Struct Sci Cryst Eng Mater ; 75(Pt 4): 611-620, 2019 Aug 01.
Artigo em Inglês | MEDLINE | ID: mdl-32830718

RESUMO

Natural or artificially manufactured peptides attract scientific interest worldwide owing to their wide array of pharmaceutical and biological activities. X-ray structural studies are used to provide a precise extraction of information, which can be used to enable a better understanding of the function and physicochemical characteristics of peptides. Although it is vulnerable to disassociation, one of the most vital human peptide hormones, somatostatin, plays a regulatory role in the endocrine system as well as in the release of numerous secondary hormones. This study reports the successful crystallization and complete structural model of octreotide, a stable octapeptide analogue of somatostatin. Common obstacles in crystallographic studies arising from the intrinsic difficulties of obtaining a suitable single-crystal specimen were efficiently overcome as polycrystalline material was employed for synchrotron and laboratory X-ray powder diffraction (XPD) measurements. Data collection and preliminary analysis led to the identification of unit-cell symmetry [orthorhombic, P212121, a = 18.5453 (15), b = 30.1766 (25), c = 39.798 (4) Å], a process which was later followed by complete structure characterization and refinement, underlying the efficacy of the suggested (XPD) approach.


Assuntos
Cristalografia por Raios X , Desenho de Fármacos , Peptídeos/síntese química , Somatostatina/análogos & derivados , Somatostatina/química , Cristalização , Modelos Moleculares , Síncrotrons
7.
Biomolecules ; 7(3)2017 08 22.
Artigo em Inglês | MEDLINE | ID: mdl-28829407

RESUMO

Human insulin (HI) is a well-characterized natural hormone which regulates glycose levels into the blood-stream and is widely used for diabetes treatment. Numerous studies have manifested that despite significant efforts devoted to structural characterization of this molecule and its complexes with organic compounds (ligands), there is still a rich diagram of phase transitions and novel crystalline forms to be discovered. Towards the improvement of drug delivery, identification of new insulin polymorphs from polycrystalline samples, simulating the commercially available drugs, is feasible today via macromolecular X-ray powder diffraction (XRPD). This approach has been developed, and is considered as a respectable method, which can be employed in biosciences for various purposes, such as observing phase transitions and characterizing bulk pharmaceuticals. An overview of the structural studies on human insulin complexes performed over the past decade employing both synchrotron and laboratory sources for XRPD measurements, is reported herein. This review aims to assemble all of the recent advances in the diabetes treatment field in terms of drug formulation, verifying in parallel the efficiency and applicability of protein XRPD for quick and accurate preliminary structural characterization in the large scale.


Assuntos
Hipoglicemiantes/química , Insulina/química , Fenóis/química , Diabetes Mellitus/tratamento farmacológico , Humanos , Hipoglicemiantes/farmacologia , Fenóis/farmacologia , Difração de Pó , Relação Estrutura-Atividade , Difração de Raios X
8.
Acta Crystallogr F Struct Biol Commun ; 72(Pt 12): 877-884, 2016 12 01.
Artigo em Inglês | MEDLINE | ID: mdl-27917835

RESUMO

Viral proteases are proteolytic enzymes that orchestrate the assembly of viral components during the viral life cycle and proliferation. Here, the expression, purification, crystallization and preliminary X-ray diffraction analysis are presented of protease 3C, the main protease of an emerging enterovirus, coxsackievirus B3, that is responsible for many cases of viral myocarditis. Polycrystalline protein precipitates suitable for X-ray powder diffraction (XRPD) measurements were produced in the presence of 22-28%(w/v) PEG 4000, 0.1 M Tris-HCl, 0.2 M MgCl2 in a pH range from 7.0 to 8.5. A polymorph of monoclinic symmetry (space group C2, unit-cell parameters a = 77.9, b = 65.7, c = 40.6 Å, ß = 115.9°) was identified via XRPD. These results are the first step towards the complete structural determination of the molecule via XRPD and a parallel demonstration of the accuracy of the method.


Assuntos
Cisteína Endopeptidases/química , Enterovirus Humano B/química , Proteínas Virais/química , Proteases Virais 3C , Sequência de Aminoácidos , Clonagem Molecular , Cristalização , Cristalografia por Raios X , Cisteína Endopeptidases/genética , Cisteína Endopeptidases/metabolismo , Enterovirus Humano B/enzimologia , Escherichia coli/genética , Escherichia coli/metabolismo , Expressão Gênica , Plasmídeos/química , Plasmídeos/metabolismo , Proteínas Recombinantes/química , Proteínas Recombinantes/genética , Proteínas Recombinantes/metabolismo , Proteínas Virais/genética , Proteínas Virais/metabolismo , Difração de Raios X
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