Large-scale variations in the dynamics of Amazon forest canopy gaps from airborne lidar data and opportunities for tree mortality estimates.

We report large-scale estimates of Amazonian gap dynamics using a novel approach with large datasets of airborne light detection and ranging (lidar), including five multi-temporal and 610 single-date lidar datasets. Specifically, we (1) compared the fixed height and relative height methods for gap delineation and established a relationship between static and dynamic gaps (newly created gaps); (2) explored potential environmental/climate drivers explaining gap occurrence using generalized linear models; and (3) cross-related our findings to mortality estimates from 181 field plots. Our findings suggest that static gaps are significantly correlated to dynamic gaps and can inform about structural changes in the forest canopy. Moreover, the relative height outperformed the fixed height method for gap delineation. Well-defined and consistent spatial patterns of dynamic gaps were found over the Amazon, while also revealing the dynamics of areas never sampled in the field. The predominant pattern indicates 20-35% higher gap dynamics at the west and southeast than at the central-east and north. These estimates were notably consistent with field mortality patterns, but they showed 60% lower magnitude likely due to the predominant detection of the broken/uprooted mode of death. While topographic predictors did not explain gap occurrence, the water deficit, soil fertility, forest flooding and degradation were key drivers of gap variability at the regional scale. These findings highlight the importance of lidar in providing opportunities for large-scale gap dynamics and tree mortality monitoring over the Amazon.

Variation of MODIS reflectance and vegetation indices with viewing geometry and soybean development.

Directional effects introduce a variability in reflectance and vegetation index determination, especially when large field-of-view sensors are used (e.g., Moderate Resolution Imaging Spectroradiometer - MODIS). In this study, we evaluated directional effects on MODIS reflectance and four vegetation indices (Normalized Difference Vegetation Index - NDVI; Enhanced Vegetation Index - EVI; Normalized Difference Water Index - NDWI(1640) and NDWI(2120)) with the soybean development in two growing seasons (2004-2005 and 2005-2006). To keep the reproductive stage for a given cultivar as a constant factor while varying viewing geometry, pairs of images obtained in close dates and opposite view angles were analyzed. By using a non-parametric statistics with bootstrapping and by normalizing these indices for angular differences among viewing directions, their sensitivities to directional effects were studied. Results showed that the variation in MODIS reflectance between consecutive phenological stages was generally smaller than that resultant from viewing geometry for closed canopies. The contrary was observed for incomplete canopies. The reflectance of the first seven MODIS bands was higher in the backscattering. Except for the EVI, the other vegetation indices had larger values in the forward scattering direction. Directional effects decreased with canopy closure. The NDVI was lesser affected by directional effects than the other indices, presenting the smallest differences between viewing directions for fixed phenological stages.

Análise derivativa de dados hiperespectrais medidos em nível de campo e orbital para caracterizar a composição de águas opticamente complexas na Amazônia / Derivative analysis of hyperespectral data measured at field and orbital level to characterize the composition of optically complex waters in the amazon

A técnica de análise derivativa de dados espectrais foi usada para estudar a variação dos constituintes opticamente ativos (COAs) na água, por meio de dados de campo e de imagens do sensor orbital Hyperion/EO-1. A imagem Hyperion usada neste estudo foi adquirida no dia 23 de junho de 2005, no final do período de cheia. Uma campanha de campo foi realizada entre 23 e 29 de junho de 2005, para coletar dados espectrais e limnológicos in situ. A imagem foi pré-processada visando eliminar faixas de pixels anômalos e convertida de valores de radiância para reflectância de superfície, portanto, corrigidos dos efeitos de absorção e espalhamento atmosféricos. Uma análise da correlação foi realizada para examinar a associação da reflectância e de sua primeira derivada espectral com as concentrações dos COAs. Melhores resultados foram obtidos após a diferenciação dos espectros, o que ajudou a reduzir a influência de efeitos indesejáveis, provindos de diferentes fontes de radiância, sobre as medidas de reflectância da superfície da água realizadas em ambos os níveis de aquisição de dados. Por meio de ajustes de regressões empíricas, considerando o conjunto de dados Hyperion, a primeira derivada espectral em 711 nm explicou 86 por cento da variação da concentração de sedimentos inorgânicos em suspensão (µg.l-1) e a primeira derivada espectral em 691 nm explicou 73 por cento da variação na concentração da clorofila-alfa (µg.l-1). As relações de regressão foram não-lineares, pois, em geral, as águas que se misturam na planície de inundação Amazônica se tornam opticamente complexas. A técnica de análise derivativa hiperespectral demonstrou potenciais para mapear a composição dessas águas.

Derivative analysis of spectral data was used as a technique to study the variation of optically active constituents (OACs) of water, using field data and hyperspectral imagery of EO-1 Hyperion orbital sensor. The Hyperion image used in this study was acquired on June 23, 2005, at the end of the high water period for the Amazon River. A field campaign was carried out between June 23 and 29, 2005 to collect spectral and limnological in situ data. The image was pre-processed to remove stripes of abnormal pixels and converted from radiance to surface reflectance values, thus, correcting the effects of atmospheric absorption and scattering. A correlation analysis was carried out to examine the association of the spectral reflectance and its first derivative to the concentrations of OACs. Better results were obtained after spectra differentiation, which helped to reduce the influence of undesirable effects, coming from different sources of radiance, on the measurements of water surface reflectance taken at both data acquisition levels. Through empirical regression fits, considering the Hyperion dataset, the first spectral derivative at 711 nm explained 86 percent of the variation of suspended inorganic sediment concentration (µg.l-1), and the first derivative at 691 nm explained 73 percent of the variation of chlorophyll-a concentration (µg.l-1). The regression relations were nonlinear because, generally, the water masses that mix in the Amazon floodplain become optically complex. The hyperspectral derivative analysis demonstrated potential for mapping the composition of these waters.