Precipitation and vegetation transpiration variations dominate the dynamics of agricultural drought characteristics in China.

Agricultural drought posing a significant threat to agricultural production is subject to the complex influence of ocean, terrestrial and meteorological multi-factors. Nevertheless, which factor dominating the dynamics of agricultural drought characteristics and their dynamic impact remain equivocal. To address this knowledge gap, we used ERA5 soil moisture to calculate the standardized soil moisture index (SSI) to characterize agricultural drought. The extreme gradient boosting model was then adopted to fully examine the influence of ocean, terrestrial and meteorological multi-factors on agricultural drought characteristics and their dynamics in China. Meanwhile, the Shapley additive explanation values were introduced to quantify the contribution of multiple drivers to drought characteristics. Our analysis reveals that the drought frequency, severity and duration in China ranged from 5-70, 2.15-35.02 and 1.76-31.20, respectively. Drought duration is increasing and drought intensity is intensifying in southeast, north and northwest China. In addition, potential evapotranspiration is the most significant driver of drought characteristics at the basin scale. Regarding the dynamic evolution of drought characteristics, the percentages of raster points for drought duration and severity with evapotranspiration as the dominant factor are 30.7 % and 32.7 %, and the percentages with precipitation are 35.3 % and 35.0 %, respectively. Precipitation in northern regions has a positive effect on decreasing drought characteristics, while in southern regions, evapotranspiration dominates the dynamics in drought characteristics due to increasing vegetation transpiration. Moreover, the drought severity is exacerbated by the Atlantic Multidecadal Oscillation in the Yangtze and Pearl River basins, while the contribution of the North Atlantic Oscillation to the drought duration evolution is increasing in the Yangtze River basin. Generally, this study sheds new insights into agricultural drought evolution and driving mechanism, which are beneficial for agricultural drought early warning and mitigation.

Regulated Expression of an Environmental DNA-Derived Type II Polyketide Gene Cluster in Streptomyces Hosts Identified a New Tetracenomycin Derivative TCM Y.

As bacterial natural products have been proved to be the most important source of many therapeutic medicines, the need to discover novel natural products becomes extremely urgent. Despite the fact that the majority of bacterial species are yet to be cultured in a laboratory setting, and that most of the bacterial natural product biosynthetic genes are silent, "metagenomics technology" offers a solution to help clone natural product biosynthetic genes from environmental samples, and genetic engineering enables the silent biosynthetic genes to be activated. In this work, a type II polyketide biosynthetic gene cluster was identified from a soil metagenomic library and was activated by over-expression of a SARP regulator gene in the gene cluster in Streptomyces hosts. A new tetracenomycin type compound tetracenomycin Y was identified from the fermentation broth. This study shows that metagenomics and genetic engineering could be combined to provide access to new natural metabolites.

Novel amikacin resistance genes identified from human gut microbiota by functional metagenomics.

AIMS: The aim of this study was to evaluate the diversity and potential for horizontal transfer of amikacin resistance genes from the human gut. METHODS AND RESULTS: A library of human faecal microbiota was constructed and subjected to functional screening for amikacin resistance. In total, five amikacin resistance genes that conferred relatively high amikacin resistance, with minimum inhibitory concentrations (MICs) ranging from 64 to >512, were identified from the library, including a novel aminoglycoside acetyltransferase gene and a 16S rRNA methyltransferase (MTase) gene, labelled aac (6')-Iao and rmtI, respectively. AAC(6')-Iao showed the highest identity of 48% to AAC(6')-Ian from a clinical isolate Serratia marcescens, whereas RmtI shared the closest amino acid identity of 32% with ArmA from Klebsiella pneumonia. The MICs of these five subclones to six commonly used aminoglycosides were determined. Susceptibility analysis indicated that RmtI was associated with high resistance phenotype to 4,6-disubstituted 2-DOS aminoglycosides, whereas AAC(6')-Iao conferred resistance to amikacin and kanamycin. In addition, kinetic parameters of AAC(6')-Iao were determined, suggesting a strong catalytic effect on amikacin and kanamycin. CONCLUSIONS: Antibiotic resistance genes with low identity to known sequences can be uncovered by functional metagenomics. In addition, the diversity and prevalence of amikacin resistance genes merit further investigation in extended habitats, especially the 16S rRNA MTase gene that might have been underestimated in previous cognition. SIGNIFICANCE AND IMPACT OF STUDY: Two novel amikacin resistance genes were identified in this study, including a 16S rRNA methyltransferase gene rmtI and an aminoglycoside acetyltransferase gene aac(6')-Iao. This work would contribute to the in-depth study of the diversity and horizontal transfer potential of amikacin resistance genes in the microbiome of the human gut.

Identification and characterization of a novel endo-ß-1,4-glucanase from a soil metagenomic library.

A cosmid clone cZFYN1413 with CMCase activity was identified from a soil metagenomic library. The sequence analysis of a subclone of cZFYN1413 revealed an endo-ß-1,4-glucanase gene ZFYN1413 belonging to glycoside hydrolase family 6 and a transmembrane region in the N-terminal of ZFYN1413. Expression of ZFYN1413 in Escherichia coli BL21 (DE3) resulted in ZFYN1413-87, which was a truncated protein cleaved in transmembrane region of ZFYN1413. ZFYN1413-87 was expressed and its enzyme properties were studied. ZFYN1413-87 possessed strong endo-ß-1,4-glucanase activity, and 52% of the activity could be retained after the protein was treated in buffer of pH 3.0 for 2 h. The study provided a special example of endo-ß-1,4-glucanase in GH6 family.

Tetracycline Resistance Genes Identified from Distinct Soil Environments in China by Functional Metagenomics.

Soil microbiota represents one of the ancient evolutionary origins of antibiotic resistance and has been increasingly recognized as a potentially vast unstudied reservoir of resistance genes with possibilities to exchange with pathogens. Tetracycline resistance is one of the most abundant antibiotic resistances that may transfer among clinical and commensal microorganisms. To investigate tetracycline resistance genes from soil bacteria in different habitats, we performed functional analysis of three metagenomic libraries derived from soil samples collected from Yunnan, Sichuan, and Tibet, respectively, in China. We found efflux transporter genes form all the libraries, including 21 major facilitator superfamily efflux pump genes and one multidrug and toxic compound extrusion (MATE) transporter gene. Interestingly, we also identified two tetracycline destructase genes, belonging to a newly described family of tetracycline-inactivating enzymes that scarcely observed in clinical pathogens, from the Tibet library. The inactivation activity of the putative enzyme was confirmed in vitro by biochemical analysis. Our results indicated that efflux pumps distributed predominantly across habitats. Meanwhile, the mechanism of enzymatic inactivation for tetracycline resistance should not be neglected and merits further investigation.