Mortality and Egg Production Patterns in the United States Prior to HP/LPAI H7N9 Detection.

In March 2017, two commercial broiler breeder operations were confirmed with H7N9 highly pathogenic avian influenza (HPAI), and an additional six commercial broiler breeder operations were found positive with an H7N9 low pathogenicity avian influenza virus (LPAIV) or an H7 LPAIV (N type not identified). To better understand conditions leading up to testing positive for AI, egg production and mortality data for the 6 mo before the outbreak were obtained from five case farms (two HPAIV-infected farms and three LPAIV-infected farms) and two control farms. Both HPAI farms experienced a sudden spike in mortality immediately before testing positive. Two LPAI farms experienced drops in egg production along with slight increases in mortality that occurred after a negative serologic test and before a positive PCR test. The third LPAI farm also had a notable drop in egg production with a coinciding increase in mortality before testing positive for AIV (last negative test date not available). Additionally, both HPAI farms and two LPAI farms reported mild respiratory illnesses in the weeks prior to testing positive for AI. Control farms did not experience similar drops in production or increase in mortality. Clinical signs on LPAI farms were mild and easily confused with background health patterns, suggesting the need for improved sensitivity to identify LPAI quickly. Applying a trigger of a 2% drop in egg production along with a mortality of 8 per 10 000 hens in individual barns showed that all case farms would be identified and uninfected farms would be falsely triggered on 1% of days monitored.

Mortalidad y patrones de producción de huevos en los Estados Unidos antes de la detección del virus de la influenza aviar H7N9 de baja y alta patogenicidad. En marzo del 2017, se confirmaron dos operaciones de reproductores pesados comerciales con influenza aviar altamente patógena H7N9 (HPAI) y adicionalmente se encontraron seis operaciones de reproductores pesados comerciales con un virus de influenza aviar de baja patogenicidad H7N9 (LPAIV) o con un virus de baja patogenicidad H7 con un subtipo de neuraminidasa no identificado. Para comprender mejor las condiciones que condujeron a un resultado positivo de influenza aviar, se recolectaron los datos de producción de huevo y mortalidad de cinco granjas que presentaron casos (dos granjas infectadas con el virus de alta patogenicidad y tres granjas infectadas con el virus de baja patogenicidad) y dos granjas control durante los seis meses anteriores al brote. Las dos grajas infectadas con el virus de alta patogenicidad experimentaron un aumento repentino en la mortalidad inmediatamente antes de que se determinaran como positivas. Dos granjas con el virus de baja patogenicidad experimentaron caídas en la producción de huevo junto con un ligero aumento en la mortalidad que se produjo después de que mostraran respuesta negativa a las pruebas serológicas y antes de resultar positivas mediante pruebas de RT-PCR. La tercera granja infectada con el virus de baja patogenicidad también tuvo una caída importante en la producción de huevo con un aumento coincidente en la mortalidad antes de que mostraran un resultado positivo para influenza aviar (la fecha de la última prueba negativa no se encontró disponible). Además, tanto las dos granjas con influenza aviar de alta patogenicidad como dos granjas con influenza aviar de baja patogenicidad reportaron enfermedades respiratorias leves en las semanas previas a la fecha cuando mostraron resultados positivos para la influenza aviar. Las granjas control no experimentaron caídas similares en la producción de huevo o aumento en la mortalidad. Los signos clínicos en las granjas de baja patogenicidad fueron leves y se confundieron fácilmente con los patrones de salud normales de la parvada, lo que sugiere la necesidad de mejorar la sensibilidad para identificar rápidamente la a la influenza aviar de baja patogenicidad. Con la aplicación de una alarma que se desencadene con una caída del 2% en la producción de huevo junto con una mortalidad de ocho por cada 10 mil gallinas en casetas individuales mostró que todas las granjas problema serían identificadas y que las granjas no infectadas podrían ser activadas falsamente en el 1% de los días monitoreados.

Factors Associated with Salmonella Prevalence in U.S. Swine Grower-Finisher Operations, 2012.

Nontyphoidal Salmonella is an important foodborne pathogen with diverse serotypes occurring in animal and human populations. The prevalence of the organism on swine farms has been associated with numerous risk factors, and although there are strong veterinary public health controls for preventing Salmonella from entering food, there remains interest in eradicating or controlling the organism in the preharvest environment. In this study, using data collected via the U.S. Department of Agriculture (USDA) National Animal Health Monitoring System Swine 2012 study, we describe nontyphoidal Salmonella and specific serotype prevalence on U.S. grower-finisher swine operations and investigate associations between Salmonella detection and numerous factors via multiple correspondence analysis (MCA) and regression analysis. MCA plots, complementary to univariate analyses, display relationships between covariates and Salmonella detection at the farm level. In the univariate analysis, Salmonella detection varied with feed characteristics and farm management practices, reports of diseases on farms and vaccinations administered, and administration of certain antimicrobials. Results from the univariate analysis reinforce the importance of biosecurity in managing diseases and pathogens such as Salmonella on farms. All multivariable regression models for the likelihood of Salmonella detection were strongly affected by multicollinearity among variables, and only one variable, pelleted feed preparation, remained in the final model. The study was limited by its cross-sectional nature, timelines of data collection, and reliance on operator-reported data via a convenience sample.

Factors Associated with Highly Pathogenic Avian Influenza H5N2 Infection on Table-Egg Layer Farms in the Midwestern United States, 2015.

A case-control study was conducted among commercial table-egg layer and pullet operations in Iowa and Nebraska, United States, to investigate potential risk factors for infection with highly pathogenic avian influenza (HPAI) H5N2. A questionnaire was developed and administered to 28 case farms and 31 control farms. Data were collected at the farm and barn levels, enabling two separate analyses to be performed-the first a farm-level comparison of case farms vs. control farms, and the second a barn-level comparison between case barns on case farms and control barns on control farms. Multivariable logistic regression models were fit using a forward-selection procedure. Key risk factors identified were farm location in an existing control zone, rendering and garbage trucks coming near barns, dead-bird disposal located near barns, and visits by a company service person. Variables associated with a decreased risk of infection included visitors changing clothing, cleaning and disinfecting a hard-surface barn entryway, and ceiling/eaves ventilation in barns.

Factors affecting use of veterinarians by small-scale food animal operations.

OBJECTIVE: To identify factors associated with use of a veterinarian by small-scale food animal operations. DESIGN: Cross-sectional descriptive survey. SAMPLE: 16,000 small-scale farm or ranch operations in all 50 states. PROCEDURES: Surveys were conducted via mail or telephone during 2011 for small-scale operations (gross annual agricultural sales between $10,000 and $499,999) in which an animal or animal product comprised the highest percentage of annual sales. RESULTS: 8,186 (51.2%) operations responded to the survey; 7,849 surveys met the inclusion criteria. For 6,511 (83.0%) operations, beef cattle were the primary animal species. An estimated 82.1% of operations (95% confidence interval [CI], 81.1% to 83.0%) had a veterinarian available ≤ 29 miles away; 1.4% (95% CI, 1.2% to 1.7%) did not have a veterinarian available within 100 miles of the operation. Operations for which the nearest veterinarian was ≥ 100 miles away or for which a veterinarian was not available were located in 40 US states. Overall, 61.7% of operations (95% CI, 60.6% to 62.9%) had used a veterinarian during the 12 months prior to the survey. Producers with college degrees were significantly more likely to use a veterinarian (675%) versus those who did not complete high school (52.9%). CONCLUSIONS AND CLINICAL RELEVANCE: Results of this study indicated most small-scale operations had adequate access to veterinarians during 2011, but there seemed to be localized shortages of veterinarians in many states.

Description of live poultry markets in the United States and factors associated with repeated presence of H5/H7 low-pathogenicity avian influenza virus.

In 2005 the National Animal Health Monitoring System conducted a survey in 183 live poultry markets throughout the United States. The objectives of this study were to describe characteristics of live poultry markets in the United States and to identify potential risk factors for markets to be repeatedly positive for low-pathogenicity avian influenza virus (LPAIV) H5/H7. A questionnaire was administered to market operators that included questions regarding types of birds and other animals in the market, biosecurity, and cleaning and disinfecting practices. A history of testing for avian influenza from March 2004 through March 2005 was obtained for each market. Cases were defined as markets with at least 2 positive LPAI/H5/H7 test results during the year (separate occasions), and controls were defined as markets that were tested at least twice during the year with all negative results. Markets in the North region (New York, New Jersey, Pennsylvania, New England) were larger than markets in the South (Florida, California, Texas) and were more likely to slaughter birds on-site. Testing for avian influenza virus (AIV) was performed more frequently in the North region than in the South region. Markets in the North region tested positive for H5 or H7 at 14.6% of the testing visits, and no markets in the South region tested positive for H5/H7 at any time during the year. Factors associated with repeated presence of LPAIV H5/H7 included number of times the market was cleaned and disinfected, being open 7 days per week, and trash disposal of dead birds.

Evaluation of risk factors for the spread of low pathogenicity H7N2 avian influenza virus among commercial poultry farms.

OBJECTIVE: To identify risk factors associated with the spread of low pathogenicity H7N2 avian influenza (AI) virus among commercial poultry farms in western Virginia during an outbreak in 2002. DESIGN: Case-control study. PROCEDURE: Questionnaires were used to collect information about farm characteristics, biosecurity measures, and husbandry practices on 151 infected premises (128 turkey and 23 chicken farms) and 199 noninfected premises (167 turkey and 32 chicken farms). RESULTS: The most significant risk factor for AI infection was disposal of dead birds by rendering (odds ratio [OR], 73). In addition, age > or = 10 weeks (OR for birds aged 10 to 19 weeks, 4.9; OR for birds aged > or = 20 weeks, 4.3) was a significant risk factor regardless of poultry species involved. Other significant risk factors included use of nonfamily caretakers and the presence of mammalian wildlife on the farm. Factors that were not significantly associated with infection included use of various routine biosecurity measures, food and litter sources, types of domestic animals on the premises, and presence of wild birds on the premises. CONCLUSIONS AND CLINICAL RELEVANCE: Results suggest that an important factor contributing to rapid early spread of AI virus infection among commercial poultry farms during this outbreak was disposal of dead birds via rendering off-farm. Because of the highly infectious nature of AI virus and the devastating economic impact of outbreaks, poultry farmers should consider carcass disposal techniques that do not require off-farm movement, such as burial, composting, or incineration.

Salmonella enterica serotype enteritidis in table egg layer house environments and in mice in U.S. layer houses and associated risk factors.

Prevalence was estimated for Salmonella enterica serotype eneritidis (SE) in layer house environments (n = 200 layer houses) and house mice (n = 129 layer houses) in 15 states throughout the United States. Environmental swabs were collected from manure, egg belts, elevators, and walkways. Live-catch rodent traps were placed for 4-7 days. Swabs and house mice were submitted to the laboratory for bacterial culture. Overall, 7.1% of layer houses and 3.7% of mice were culture positive for SE. The highest prevalence was in the Great Lakes region of the United States, and no SE was recovered from houses or mice in the southeast region. Presence of SE in layer houses was associated with age/molting, floor reared pullets, and number of rodents trapped. Cleaning and disinfecting houses between flocks was associated with a reduced risk. The prevalence of SE in mice from environmentally positive houses was nearly four times that of mice from environmentally negative houses.

Case-control study of factors associated with excessive proportions of early fetal losses associated with mare reproductive loss syndrome in central Kentucky during 2001.

OBJECTIVE: To identify factors associated with excessive proportions of early fetal losses associated with mare reproductive loss syndrome in central Kentucky during 2001. DESIGN: Case-control study. PROCEDURE: Questionnaires were used to collect information on farm-, pasture-, and individual animal-level factors purportedly associated with mare reproductive loss syndrome. Data were collected for 133 farms (97 with excessive proportions of early feta losses and 36 control farms) representing 6,576 mares. RESULTS: Factors significantly associated with an increased risk of excessive early fetal losses were exposure to moderate to high concentrations of Eastern tent caterpillars, exposure to cherry trees, farm size > or = 50 broodmares, being bred during February 2001, and frequent exposure to waterfowl. Feeding hay to mares outside was associated with a decreased risk of excessive proportions of early fetal losses. Pasture composition and management factors were not significantly different between affected and control pastures. Individual animal-level factors were investigated on 6 farms representing 340 mares, and age, parity, and pre- and postbreeding treatments were not significantly associated with risk of early fetal loss. CONCLUSIONS AND CLINICAL RELEVANCE: Results suggest that limiting exposure to Eastern tent caterpillars and cherry trees and feeding hay to mares outside may help decrease the risk of excessive proportions of early fetal losses associated with mare reproductive loss syndrome.

Development of a real-time reverse transcriptase PCR assay for type A influenza virus and the avian H5 and H7 hemagglutinin subtypes.

A real-time reverse transcriptase PCR (RRT-PCR) assay based on the avian influenza virus matrix gene was developed for the rapid detection of type A influenza virus. Additionally, H5 and H7 hemagglutinin subtype-specific probe sets were developed based on North American avian influenza virus sequences. The RRT-PCR assay utilizes a one-step RT-PCR protocol and fluorogenic hydrolysis type probes. The matrix gene RRT-PCR assay has a detection limit of 10 fg or approximately 1,000 copies of target RNA and can detect 0.1 50% egg infective dose of virus. The H5- and H7-specific probe sets each have a detection limit of 100 fg of target RNA or approximately 10(3) to 10(4) gene copies. The sensitivity and specificity of the real-time PCR assay were directly compared with those of the current standard for detection of influenza virus: virus isolation (VI) in embryonated chicken eggs and hemagglutinin subtyping by hemagglutination inhibition (HI) assay. The comparison was performed with 1,550 tracheal and cloacal swabs from various avian species and environmental swabs obtained from live-bird markets in New York and New Jersey. Influenza virus-specific RRT-PCR results correlated with VI results for 89% of the samples. The remaining samples were positive with only one detection method. Overall the sensitivity and specificity of the H7- and H5-specific RRT-PCR were similar to those of VI and HI.

Factors Associated with the Presence of Escherichia coli O157 in Feces of Feedlot Cattle.

Fecal samples were collected from pens of cattle in a total of 100 feedlots in 13 states. Fecal samples were cultured for Escherichia coli O157. E. coli O157 isolates were probed for the genetic coding for verotoxin production. At the time of sample collection, data were collected on the type of cattle present in the pen, as well as the length of time these cattle were in the feedlot, ingredients for the current ration, and cattle health history since arriving in the feedlot. Factors associated with increased likelihood of a pen being positive (one or more samples probe-positive for E. coli O157) included feeding of barley (odds ratio [OR] = 2.75) and cattle being on feed less than 20 days (OR = 3.39). Factors associated with a reduced likelihood of a pen being positive included feeding soy meal (OR = 0.50), a cattle entry weight of at least 700 lb (ca. 317.5 kg) (OR = 0.54), and at least 85% of the cattle in the pen being beef-type heifers (OR = .33).