Root responses of contrasting rice genotypes to low temperature stress.

Rice (Oryza sativa L.) ssp. indica is the most cultivated species in the South of Brazil. However, these plants face low temperature stress from September to November, which is the period of early sowing, affecting plant development during the initial stages of growth, and reducing rice productivity. This study aimed to characterize the root response to low temperature stress during the early vegetative stage of two rice genotypes contrasting in their cold tolerance (CT, cold-tolerant; and CS, cold-sensitive). Root dry weight and length, as well as the number of root hairs, were higher in CT than CS when exposed to cold treatment. Histochemical analyses indicated that roots of CS genotype present higher levels of lipid peroxidation and H2O2 accumulation, along with lower levels of plasma membrane integrity than CT under low temperature stress. RNAseq analyses revealed that the contrasting genotypes present completely different molecular responses to cold stress. The number of over-represented functional categories was lower in CT than CS under cold condition, suggesting that CS genotype is more impacted by low temperature stress than CT. Several genes might contribute to rice cold tolerance, including the ones related with cell wall remodeling, cytoskeleton and growth, signaling, antioxidant system, lipid metabolism, and stress response. On the other hand, high expression of the genes SRC2 (defense), root architecture associated 1 (growth), ACC oxidase, ethylene-responsive transcription factor, and cytokinin-O-glucosyltransferase 2 (hormone-related) seems to be related with cold sensibility. Since these two genotypes have a similar genetic background (sister lines), the differentially expressed genes found here can be considered candidate genes for cold tolerance and could be used in future biotechnological approaches aiming to increase rice tolerance to low temperature.

Unraveling Rice Tolerance Mechanisms Against Schizotetranychus oryzae Mite Infestation.

Rice is the staple food for over half of the world's population. Infestation of Schizotetranychus oryzae (Acari: Tetranychidae) causes great losses in rice productivity. To search for rice genotypes that could better tolerate S. oryzae infestation, we evaluated morphological and production parameters in Brazilian cultivars, and identified two cultivars with contrasting responses. Leaf damage during infestation was similar for all cultivars. However, infestation in Puitá INTA-CL resulted in reduction in the number of seeds per plant, percentage of full seeds, weight of 1,000 seeds, and seed length, whereas infestation in IRGA 423 increased weight of 1,000 seeds and seed length. Reduction in seed weight per plant caused by infestation was clearly higher in Puitá INTA-CL (62%) compared to IRGA 423 (no reduction detected), thus Puitá INTA-CL was established as susceptible, and IRGA 423 as tolerant to S. oryzae infestation. Photosynthetic parameters were less affected by infestation in IRGA 423 than in Puitá INTA-CL, evidencing higher efficiency of energy absorption and use. S. oryzae infestation also caused accumulation of H2O2, decreased cell membrane integrity (indicative of cell death), and accelerated senescence in leaves of Puitá INTA-CL, while leaves of IRGA 423 presented higher levels of total phenolics compounds. We performed proteomics analysis of Puitá INTA-CL and IRGA 423 leaves after 7 days of infestation, and identified 60 differentially abundant proteins (28 more abundant in leaves of Puitá INTA-CL and 32 in IRGA 423). Proteins related to plant defense, such as jasmonate synthesis, and related to other mechanisms of tolerance such as oxidative stress, photosynthesis, and DNA structure maintenance, together with energy production and general metabolic processes, were more abundant in IRGA 423. We also detected higher levels of silicon (as amorphous silica cells) in leaves of infested IRGA 423 plants compared to Puitá INTA-CL, an element previously linked to plant defense, indicating that it could be involved in tolerance mechanisms. Taken together, our data show that IRGA 423 presents tolerance to S. oryzae infestation, and that multiple mechanisms might be employed by this cultivar. These findings could be used in biotechnological approaches aiming to increase rice tolerance to mite infestation.