Searching for genetic evidence of demographic decline in an arctic seabird: beware of overlapping generations.

Genetic data are useful for detecting sudden population declines in species that are difficult to study in the field. Yet this indirect approach has its own drawbacks, including population structure, mutation patterns, and generation overlap. The ivory gull (Pagophila eburnea), a long-lived Arctic seabird, is currently suffering from rapid alteration of its primary habitat (i.e., sea ice), and dramatic climatic events affecting reproduction and recruitment. However, ivory gulls live in remote areas, and it is difficult to assess the population trend of the species across its distribution. Here we present complementary microsatellite- and SNP-based genetic analyses to test a recent bottleneck genetic signal in ivory gulls over a large portion of their distribution. With attention to the potential effects of population structure, mutation patterns, and sample size, we found no significant signatures of population decline worldwide. At a finer scale, we found a significant bottleneck signal at one location in Canada. These results were compared with predictions from simulations showing how generation time and generation overlap can delay and reduce the bottleneck microsatellite heterozygosity excess signal. The consistency of the results obtained with independent methods strongly indicates that the species shows no genetic evidence of an overall decline in population size. However, drawing conclusions related to the species' population trends will require a better understanding of the effect of age structure in long-lived species. In addition, estimates of the effective global population size of ivory gulls were surprisingly low (~1000 ind.), suggesting that the evolutionary potential of the species is not assured.

Morphological description and DNA barcoding of some Diamesinae (Diptera, Chironomidae) from the Severnaya Zemlya Archipelago and the Vaigach Island (Russian Arctic).

Chironomids of the Diamesinae subfamily from the Russian Arctic were studied using both morphological characters and molecular data. Adult males of Diamesa urvantsevi sp. nov., D. amplexivirilia Hansen, Arctodiamesa appendiculata (Lundström) from Severnaya Zemlya Archipelago and D. arctica (Boheman), Pseudokiefferiella sp. from Vaigach Island were described, redescribed, annotated and figured. A reference 658 bp barcode sequence from a fragment of the mitochondrial gene cytochrome oxidase I (COI) was used as a tool for species delimitation. For D. arctica (Boheman) and Pseudokiefferiella sp. close DNA barcodes from Norway were performed, which allowed to relate these specimens to the described species. Comparisons with corresponding regions of COI between each described species and close related congeneric species produced K2P genetic distances of 0.11-0.16, values well associated with interspecific variation. Phylogenetic relationships for genera Arctodiamesa Makarchenko and Pseudokiefferiella Zavrel were reconstructed for the first time.

Living on the edge of a shrinking habitat: the ivory gull, Pagophila eburnea, an endangered sea-ice specialist.

The ongoing decline of sea ice threatens many Arctic taxa, including the ivory gull. Understanding how ice-edges and ice concentrations influence the distribution of the endangered ivory gulls is a prerequisite to the implementation of adequate conservation strategies. From 2007 to 2013, we used satellite transmitters to monitor the movements of 104 ivory gulls originating from Canada, Greenland, Svalbard-Norway and Russia. Although half of the positions were within 41 km of the ice-edge (75% within 100 km), approximately 80% were on relatively highly concentrated sea ice. Ivory gulls used more concentrated sea ice in summer, when close to their high-Arctic breeding ground, than in winter. The best model to explain the distance of the birds from the ice-edge included the ice concentration within approximately 10 km, the month and the distance to the colony. Given the strong links between ivory gull, ice-edge and ice concentration, its conservation status is unlikely to improve in the current context of sea-ice decline which, in turn, will allow anthropogenic activities to develop in regions that are particularly important for the species.

Metagenomic and satellite analyses of red snow in the Russian Arctic.

Cryophilic algae thrive in liquid water within snow and ice in alpine and polar regions worldwide. Blooms of these algae lower albedo (reflection of sunlight), thereby altering melting patterns (Kohshima, Seko & Yoshimura, 1993; Lutz et al., 2014; Thomas & Duval, 1995). Here metagenomic DNA analysis and satellite imaging were used to investigate red snow in Franz Josef Land in the Russian Arctic. Franz Josef Land red snow metagenomes confirmed that the communities are composed of the autotroph Chlamydomonas nivalis that is supporting a complex viral and heterotrophic bacterial community. Comparisons with white snow communities from other sites suggest that white snow and ice are initially colonized by fungal-dominated communities and then succeeded by the more complex C. nivalis-heterotroph red snow. Satellite image analysis showed that red snow covers up to 80% of the surface of snow and ice fields in Franz Josef Land and globally. Together these results show that C. nivalis supports a local food web that is on the rise as temperatures warm, with potential widespread impacts on alpine and polar environments worldwide.

Circumpolar contamination in eggs of the high-Arctic ivory gull Pagophila eburnea.

The ivory gull Pagophila eburnea is a high-Arctic species threatened by climate change and contaminants. The objective of the present study was to assess spatial variation of contaminant levels (organochlorines [OCs], brominated flame retardants [BFRs], perfluorinated alkyl substances [PFASs], and mercury [Hg]) in ivory gulls breeding in different areas across the Arctic region as a baseline for potential future changes associated with climate change. Contaminants were already determined in eggs from Canada (Seymour Island; except PFASs), Svalbard in Norway (Svenskøya), and 3 sites in Russia (Nagurskoe, Cape Klyuv, and Domashny). New data from Greenland allowed the investigation of a possible longitudinal gradient of contamination. The most quantitatively abundant OCs were p,p'-dichlorodiphenyldichloroethylene (DDE) and polychlorobiphenyls. Mercury concentrations were higher in Canada compared with other colonies. Eggs from Nagurskoe often were characterized by higher OC and BFR concentrations. Concentrations gradually decreased in colonies situated east of Nagurskoe. In contrast, PFAS concentrations, especially perfluorooctanoate and perfluorononanoate, were higher in Greenland. Some of the contaminants, especially Hg and p,p'-DDE, exceeded published thresholds known to disrupt the reproductive success of avian species. Overall, the levels of OCs, BFRs, and PFASs did not suggest direct lethal exposure to these compounds, but their potential synergetic/additive sublethal effects warrant monitoring.

Eggshell thinning and decreased concentrations of vitamin E are associated with contaminants in eggs of ivory gulls.

The ivory gull is a high Arctic seabird species threatened by climate change and contaminant exposure. High levels of contaminants have been reported in ivory gull Pagophila eburnea eggs from Svalbard and the Russian Arctic. The present study investigated associations between high levels of contaminants (organochlorinated pesticides (OCPs), polychlorinated biphenyls (PCBs), brominated flame retardants (BFRs), perfluorinated alkyl substances (PFASs) and mercury (Hg)) and three response variables: eggshell thickness, retinol (vitamin A) and α-tocopherol (vitamin E). Negative associations were found between levels of OCPs, PCBs and BFRs and eggshell thickness (p<0.021) and α-tocopherol (p<0.023), but not with retinol (p>0.1). There were no associations between PFASs and mercury and the three response variables. Furthermore, the eggshell thickness was 7-17% thinner in the present study than in archived ivory gull eggs (≤1930). In general, a thinning above 16 to 20% has been associated with a decline in bird populations, suggesting that contaminant-induced eggshell thinning may constitute a serious threat to ivory gull populations globally.

Description of microsatellite markers and genotyping performances using feathers and buccal swabs for the Ivory gull (Pagophila eburnea).

We report 22 new polymorphic microsatellites for the Ivory gull (Pagophila eburnea), and we describe how they can be efficiently co-amplified using multiplexed polymerase chain reactions. In addition, we report DNA concentration, amplification success, rates of genotyping errors and the number of genotyping repetitions required to obtain reliable data with three types of noninvasive or nondestructive samples: shed feathers collected in colonies, feathers plucked from living individuals and buccal swabs. In two populations from Greenland (n=21) and Russia (Severnaya Zemlya Archipelago, n=21), the number of alleles per locus varied between 2 and 17, and expected heterozygosity per population ranged from 0.18 to 0.92. Twenty of the markers conformed to Hardy-Weinberg and linkage equilibrium expectations. Most markers were easily amplified and highly reliable when analysed from buccal swabs and plucked feathers, showing that buccal swabbing is a very efficient approach allowing good quality DNA retrieval. Although DNA amplification success using single shed feathers was generally high, the genotypes obtained from this type of samples were prone to error and thus need to be amplified several times. The set of microsatellite markers described here together with multiplex amplification conditions and genotyping error rates will be useful for population genetic studies of the Ivory gull.

High levels of contaminants in ivory gull Pagophila eburnea eggs from the Russian and Norwegian Arctic.

We found high levels of contaminants, in particular organochlorines, in eggs of the ivory gull Pagophila eburnea, a high Arctic seabird species threatened by climate change and contaminants. An 80% decline in the ivory gull breeding population in the Canadian Arctic the last two decades has been documented. Because of the dependence of the ivory gull on sea ice and its high trophic position, suggested environmental threats are climate change and contaminants. The present study investigated contaminant levels (organochlorines, brominated flame retardants, perfluorinated alkyl substances, and mercury) in ivory gull eggs from four colonies in the Norwegian (Svalbard) and Russian Arctic (Franz Josef Land and Severnaya Zemlya). The contaminant levels presented here are among the highest reported in Arctic seabird species, and we identify this as an important stressor in a species already at risk due to environmental change.