AIEgen orthopalladated hybrid polymers for efficient inactivation of the total coliforms in urban wastewater.

Monitorable AIE polymers with a bioactive pattern are employed in advanced biomedical applications such as functional coatings, theranostic probes, and implants. After the global COVID-19 pandemic, interest in developing surfaces with superior antimicrobial, antiproliferative, and antiviral activities dramatically increased. Many formulations for biocide surfaces are based on hybrid organic/inorganic materials. Palladium (II) complexes display relevant activity against common bacteria, even higher when compared to their uncoordinated ligands. This article reports the design and synthesis of two series of orthopalladated polymers obtained by grafting a cyclopalladated fragment on two different O, N chelating Schiff base polymers. Different grafting percentages were examined and compared for each organic polymer. The fluorescence emission in the solid state was explored on organic matrixes and grafted polymers. DFT analysis provided a rationale for the role of the coordination core. The antibacterial response of the two series of hybrid polymers was tested against the total coliform group of untreated urban wastewater, revealing excellent inactivation ability.

A DR/NIR Hybrid Polymeric Tool for Functional Bio-Coatings: Theoretical Study, Cytotoxicity, and Antimicrobial Activity.

Among modern biomaterials, hybrid tools containing an organic component and a metal cation are recognized as added value, and, for many advanced biomedical applications, synthetic polymers are used as thin protective/functional coatings for medical or prosthetic devices and implants. These materials require specific non-degradability, biocompatibility, antimicrobial, and antiproliferative properties to address safety aspects concerning their use in medicine. Moreover, bioimaging monitoring of the biomedical device and/or implant through biological tissues is a desirable ability. This article reports a novel hybrid metallopolymer obtained by grafting zinc-coordinated fragments to an organic polymeric matrix. This hybrid polymer, owing to its relevant emission in the deep red to near-infrared (DR/NIR) region, is monitorable; therefore, it represents a potential material for biomedical coating. Furthermore, it shows good biocompatibility and adhesion properties and excellent stability in slightly acidic/basic water solutions. Finally, in contact with the superficial layers of human skin, it shows antimicrobial properties against Staphylococcus aureus bacterial strains.

How deeply are core electrons perturbed when valence electrons are spin polarized? The case study of transition metal compounds.

The ferromagnetic and antiferromagnetic wave functions of the KMnF3 perovskite have been evaluated quantum-mechanically by using an all electron approach and, for comparison, pseudopotentials on the transition metal and the fluorine ions. It is shown that the different number of α and ß electrons in the d shell of Mn perturbs the inner shells, with shifts between the α and ß eigenvalues that can be as large as 6 eV for the 3s level, and is far from negligible also for the 2s and 2p states. The valence electrons of F are polarized by the majority spin electrons of Mn, and in turn, spin polarize their 1s electrons. When a pseudopotential is used, such a spin polarization of the core functions of Mn and F can obviously not take place. The importance of such a spin polarization can be appreciated by comparing (i) the spin density at the Mn and F nuclear position, and then the Fermi contact constant, a crucial quantity for the hyperfine coupling, and (ii) the ferromagnetic-antiferromagnetic energy difference, when obtained with an all electron or a pseudopotential scheme, and exploring how the latter varies with pressure. This difference is as large as 50% of the all electron datum, and is mainly due to the rigid treatment of the F ion core. The effect of five different functionals on the core spin polarization is documented.

Insights into Two Novel Orthopalladated Chromophores with Antimicrobial Activity against Escherichia coli.

Advanced chromophoric tools, besides being biologically active, need to meet the expectations of the technological demands including stability, colour retention, and proper solubility for their target. Many coordination compounds of conjugated ligands are antibacterial dyes, able to combine a strong dyeing performance with a useful biological activity. Specifically, palladium (II) complexes of Schiff base ligands are known for their relevant activity against common bacteria. In this article, we report the synthesis and comprehensive experimental and theoretical characterization of two novel Pd(II) chromophore complexes obtained from a cyclopalladated Schiff base as two different chelating azo dyes. The antibacterial response of these two novel complexes was tested against the ubiquitous Escherichia coli bacterium in an aqueous medium and revealed a noteworthy antimicrobial activity, higher than when compared with their uncoordinated biologically active ligands.

Thermo-Induced Fluorochromism in Two AIE Zinc Complexes: A Deep Insight into the Structure-Property Relationship.

Solid-state emitters exhibiting mechano-fluorochromic or thermo-fluorochromic responses represent the foundation of smart tools for novel technological applications. Among fluorochromic (FC) materials, solid-state emissive coordination complexes offer a variety of fluorescence responses related to the dynamic of noncovalent metal-ligand coordination bonds. Relevant FC behaviour can result from the targeted choice of metal cation and ligands. Herein, we report the synthesis and characterization of two different colour emitters consisting of zinc complexes obtained from N,O bidentate ligands with different electron-withdrawing substituents. The two complexes are blue and orange solid-state fluorophores, respectively, highly responsive to thermal and mechanical stress. These emitters show a very different photoluminescent (PL) pattern as recorded before and after the annealing treatment. Through X-ray structural analysis combined with thermal analysis, infrared (IR) spectroscopy, PL, and DFT simulation we provide a comprehensive analysis of the structural feature involved in the fluorochromic response. Notably, we were able to correlate the on-off thermo-fluorochromism of the complexes with the structural rearrangement at the zinc coordination core.

A Novel L-Shaped Fluorescent Probe for AIE Sensing of Zinc (II) Ion by a DR/NIR Response.

In the field of optical sensors, small molecules responsive to metal cations are of current interest. Probes displaying aggregation-induced emission (AIE) can solve the problems due to the aggregation-caused quenching (ACQ) molecules, scarcely emissive as aggregates in aqueous media and in tissues. The addition of a metal cation to an AIE ligand dissolved in solution can cause a "turn-on" of the fluorescence emission. Half-cruciform-shaped molecules can be a winning strategy to build specific AIE probes. Herein, we report the synthesis and characterization of a novel L-shaped fluorophore containing a benzofuran core condensed with 3-hydroxy-2-naphthaldehyde crossed with a nitrobenzene moiety. The novel AIE probe produces a fast colorimetric and fluorescence response toward zinc (II) in both in neutral and basic conditions. Acting as a tridentate ligand, it produces a complex with enhanced and red-shifted emission in the DR/NIR spectral range. The AIE nature of both compounds was examined on the basis of X-ray crystallography and DFT analysis.

The NV-N+ charged pair in diamond: a quantum-mechanical investigation.

The NV-N+ charged pair in diamond has been investigated by using a Gaussian-type basis set, the B3LYP functional, the supercell scheme and the CRYSTAL code. It turns out that: (i) when the distance between the two defects is larger than 6-7 Å, the properties of the double defect are the superposition of the properties of the individual defects. (ii) The energy required for the reaction NV0 + Ns→ NV- + N+ is roughly -1.3 eV at about 12 Å, irrespective of the basis set and functional adopted, and remains negative at any larger distance. (iii) These results support the observation of a charge transfer mechanism through a Ns→ NV0 donation occurring in the ground state, through a tunnelling process, without irradiation. (iv) The IR spectrum of the two subunits is characterized by specific peaks, that might be used as fingerprints. (v) Calculation of electrostatic interaction permitted an estimate of the effective charge of the defects.

Oxygen and vacancy defects in silicon. A quantum mechanical characterization through the IR and Raman spectra.

The Infrared (IR) and Raman spectra of various defects in silicon, containing both oxygen atoms (in the interstitial position, Oi) and a vacancy, are computed at the quantum mechanical level by using a periodic supercell approach based on a hybrid functional (B3LYP), an all-electron Gaussian-type basis set, and the Crystal code. The first of these defects is VO: the oxygen atom, twofold coordinated, saturates the unpaired electrons of two of the four carbon atoms on first neighbors of the vacancy. The two remaining unpaired electrons on the first neighbors of the vacancy can combine to give a triplet (Sz = 1) or a singlet (Sz = 0) state; both states are investigated for the neutral form of the defect, together with the doublet solution, the ground state of the negatively charged defect. Defects containing two, three, and four oxygen atoms, in conjunction with the vacancy V, are also investigated as reported in many experimental papers: VO2 and VOOi (two oxygen atoms inside the vacancy, or one in the vacancy and one in interstitial position between two Si atoms) and VO2Oi and VO22Oi (containing three and four oxygen atoms). This study integrates and complements a recent investigation referring to Oi defects [Gentile et al., J. Chem. Phys. 152, 054502 (2020)]. A general good agreement is observed between the simulated IR spectra and experimental observations referring to VOx (x = 1-4) defects.

Interstitial carbon defects in silicon. A quantum mechanical characterization through the infrared and Raman spectra.

The Infrared (IR) and Raman spectra of various interstitial carbon defects in silicon are computed at the quantum mechanical level by using an all electron Gaussian type basis set, the hybrid B3LYP functional and the supercell approach, as implemented in the CRYSTAL code (Dovesi et al. J. Chem. Phys. 2020, 152, 204111). The list includes two 〈100〉 split interstitial IXY defects, namely ICC and ICSi , a couple of related defects that we indicate as IX IY , the so called C i C s 0 in its A and B form, as well as SiCi Si and Cs Ci Cs , in which the interstitial carbon atom is twofold coordinated. The second undergoes a large relaxation, and the final configuration is close to ICC Cs . Geometries, relative stabilities, electronic, and vibrational properties are analysed. All these defects show characteristic features in their IR spectrum (above 730 cm- 1 ), whereas the Raman spectrum is dominated, in most of the cases, by the pristine silicon peak at 530 cm-1 , that hides the defect peaks.

Interstitial defects in diamond: A quantum mechanical simulation of their EPR constants and vibrational spectra.

The local geometry, electronic structure, and vibrational features of three vicinal double interstitial defects in diamond, ICIC, ICIN, and ININ, are investigated and compared with those of three "simple" ⟨100⟩ interstitial defects, ICC, ICN, and INN, previously reported by Salustro et al. [Phys. Chem. Chem. Phys. 20, 16615 (2018)], using a similar quantum mechanical approach based on the B3LYP functional constructed from Gaussian-type basis sets, within a supercell scheme, as implemented in the CRYSTAL code. For the first time, the Fermi contact term and hyperfine coupling tensor B of the four open shell structures, ICIC, ICIN, ICC, and ICN, are evaluated and compared with the available experimental EPR data. For the two double interstitial defects, the agreement with experiment is good, whereas that for the single interstitials is found to be very poor, for which a likely reason is the incorrect attribution of the EPR spectra to uncertain atomic details of the micro-structure of the samples. The infrared spectra of the three double interstitial defects exhibit at least two peaks that can be used for their characterization.

The CRYSTAL code, 1976-2020 and beyond, a long story.

CRYSTAL is a periodic ab initio code that uses a Gaussian-type basis set to express crystalline orbitals (i.e., Bloch functions). The use of atom-centered basis functions allows treating 3D (crystals), 2D (slabs), 1D (polymers), and 0D (molecules) systems on the same grounds. In turn, all-electron calculations are inherently permitted along with pseudopotential strategies. A variety of density functionals are implemented, including global and range-separated hybrids of various natures and, as an extreme case, Hartree-Fock (HF). The cost for HF or hybrids is only about 3-5 times higher than when using the local density approximation or the generalized gradient approximation. Symmetry is fully exploited at all steps of the calculation. Many tools are available to modify the structure as given in input and simplify the construction of complicated objects, such as slabs, nanotubes, molecules, and clusters. Many tensorial properties can be evaluated by using a single input keyword: elastic, piezoelectric, photoelastic, dielectric, first and second hyperpolarizabilities, etc. The calculation of infrared and Raman spectra is available, and the intensities are computed analytically. Automated tools are available for the generation of the relevant configurations of solid solutions and/or disordered systems. Three versions of the code exist: serial, parallel, and massive-parallel. In the second one, the most relevant matrices are duplicated on each core, whereas in the third one, the Fock matrix is distributed for diagonalization. All the relevant vectors are dynamically allocated and deallocated after use, making the code very agile. CRYSTAL can be used efficiently on high performance computing machines up to thousands of cores.

The spectroscopic characterization of interstitial oxygen in bulk silicon: A quantum mechanical simulation.

The vibrational Infrared and Raman spectra of six interstitial oxygen defects in silicon containing a Si-O-Si bridge between adjacent Si atoms are obtained from all-electron B3LYP calculations within a supercell scheme, as embodied in the CRYSTAL code. Two series of defects have been considered, starting from the single interstitial defect, O1. The first consists of four defects, O1,n, in which two O1 defects are separated by (n - 1) Si atoms, up to n = 4. The second consists of four defects, On, in which nO1 defects surround a single Si atom, with n = 1-4, where O4 has the same local nearest neighbor structure as α-quartz. For both series of defects, the equilibrium geometries, charge distributions, and band structures are reported and analyzed. The addition of 1-4 oxygen atoms to the perfect lattice generates 3-12 new vibrational modes, which, as a result of the lighter atomic mass of O with respect to Si, are expected to occur at wavenumbers higher than 521 cm-1, the highest frequency of pristine silicon, thereby generating a unique new Raman spectrum. However, only a small subset of these new modes is found in the spectrum. They appear at 1153 cm-1 (O1), at 1049 cm-1 and 1100 cm-1 (O1,2), at 1108 cm-1 (O1,3), at 1130 cm-1 and 1138 cm-1 (O1,4), and 773 cm-1, 1057 cm-1, and 1086 cm-1 (O4), and can be considered "fingerprints" of the respective defects, as they are sufficiently well separated from each other. Graphical animations indicate the nature and intensity of each of the observed modes which are not overtones or combinations.

Nitrogen substitutional defects in silicon. A quantum mechanical investigation of the structural, electronic and vibrational properties.

The vibrational infrared (IR) and Raman spectra of seven substitutional defects in bulk silicon are computed, by using the quantum mechanical CRYSTAL code, the supercell scheme, an all electron Gaussian type basis set and the B3LYP functional. The relative stability of various spin states has been evaluated, the geometry optimized, the electronic structure analyzed. The IR and Raman intensities have been evaluated analitically. In all cases the IR spectrum is dominated by a single N peak (or by two or three peaks with very close wavenumbers), whose intensity is at least 20 times larger than the one of any other peak. These peaks fall in the 645-712 cm-1 interval, and a shift of few cm-1 is observed from case to case. The Raman spectrum of all defects is dominated by an extremely intense peak at about 530 cm-1, resulting from the (weak) perturbation of the peak of pristine silicon.

On the Models for the Investigation of Charged Defects in Solids: The Case of the VN- Defect in Diamond.

Local charged defects in periodic systems are usually investigated by adopting the supercell charge compensated (CC) model, which consists of two main ingredients: (i) the periodic supercell, hopefully large enough to reduce to negligible values the interaction among defects belonging to different cells; (ii) a background of uniform compensating charge that restores the neutrality of the supercell and then avoids the "Coulomb catastrophe". Here, an alternative approach is proposed and compared to CC, the double defect (DD) model, in which another point defect is introduced in the supercell that provides (or accept) the electron to be transferred (subtracted) to the defect of interest. The DD model requires obviously a (much) larger supercell than CC, and the effect of the relative position of the two defects must be explored. A third possible option, the cluster approach, is not discussed here. The two models have been compared with reference to the VN- defect; for DD, the positive compensating charge is provided by a P atom. Three cubic supercells of increasing size (containing 216, 512, and 1000 atoms) and up to eight relative VN--P+ defect-defect positions have been considered. The comparison extends to the equilibrium geometry around the defect, band structure, charge and spin distribution, IR and Raman vibrational spectra, and electron paramagnetic resonance constants. It turns out that the CC and DD models provide very similar results for all of these properties, in particular when the P+ compensating defect is not too close to VN-.

Vibrational spectroscopy of hydrogens in diamond: a quantum mechanical treatment.

The electronic and vibrational features of the VHn (n = 1 to 4) family of defects in diamond (hydrogen atoms saturating the dangling bonds of the atoms surrounding a vacancy) are investigated at the quantum mechanical level by using the periodic supercell approach, an all electron Gaussian type basis set, hybrid functionals, and the Crystal code. Most of the results have been collected for supercells containing 64 atoms; however, in order to explore the effect of the defect concentration on both the IR and Raman spectra, supercells containing 216, 512 and 1000 atoms have also been considered in the VH4 case. For each system, all the possible spin states are considered; their relative stability, band structure, charge and spin density distributions are thoroughly described. All the investigated systems present specific IR and Raman spectra, with vibrational spectroscopic features that can in principle be used as fingerprints for their characterization. This is particularly true for the C-H stretching, that ranges between 2500 and 4400 cm-1. The stretching modes are strongly affected by anharmonicity that has been evaluated in this work; it turns out to be extremely sensitive to the H load and spin state of the system, and ranges from -335 cm-1 for VH1 to +85 cm-1 for VH4. All of the investigated defects have very low C-H stretching IR intensity, so that they essentially appear as silent, the exception being VH1. The situation is different for the Raman spectra: the stretching modes of all defects do have similar large intensity; unfortunately here it is the experimental evidence that is lacking.

Characterization of the B-Center Defect in Diamond through the Vibrational Spectrum: A Quantum-Mechanical Approach.

The B-center in diamond, which consists of a vacancy whose four first nearest-neighbors are nitrogen atoms, has been investigated at the quantum-mechanical level with an all-electron Gaussian-type basis set, hybrid functionals, and the periodic supercell approach. To simulate various defect concentrations, four cubic supercells have been considered, containing (before the creation of the vacancy) 64, 216, 512, and 1000 atoms, respectively. Whereas the B-center does not affect the Raman spectrum of diamond, several intense peaks appear in the IR spectrum, which should permit us to identify this defect. It turns out that of the seven peaks proposed by Sutherland in 1954, located at 328, 780, 1003, 1171, 1332, 1372, and 1426 cm-1, and frequently mentioned as fingerprints of the B center, the first one and the last three do not appear in the simulated spectrum at any concentration. The graphical animation of the modes confirms the attribution of the remaining three and also permits investigation of the nature of the full set of modes.

The VN3H defect in diamond: a quantum-mechanical characterization.

The VN3H defect in diamond (a vacancy surrounded by three nitrogen and one carbon atoms, the latter being saturated by a hydrogen atom) is investigated quantum-mechanically by use of a periodic supercell approach, an all-electron Gaussian-type basis set, "hybrid" functionals of density functional theory, and the Crystal program. Three fully optimized structural models (supercells containing 32, 64, and 128 atoms) are considered to investigate the effect of defect concentration. The electronic configuration of the defect is reported along with a description of its structural features. In particular, the influence of the lone-pair electrons of the three nitrogen atoms on the C-H bond is discussed. A thorough characterization of the vibrational spectroscopic features of the VN3H defect is also presented, where the anharmonicity of the most relevant normal modes is discussed. The infrared and Raman spectra show specific peaks, which allow for the identification of this particular defect among the many defects that are commonly present in both natural and irradiation-damaged diamonds. In particular, the main feature of the spectral fingerprint of the defect (i.e. the C-H stretching mode), experimentally observed at 3107 cm-1, is here computed at 3094 cm-1 with the B3LYP "hybrid" functional (with an anharmonic redshift of 157 cm-1 with respect to its harmonic value). The role played by the three nitrogen atoms on the spectral features of the defect is clearly identified through the redshift due to the 14N → 15N isotopic substitution.