Required sampling intensity for community analyses of intertidal infauna to detect a mechanical disturbance.

In coastal ecosystems, infaunal (animals living within the sediment) invertebrates are used to study and monitor disturbances. However, it is an open question as to the minimal required sampling intensity to detect that a disturbance has influenced such communities. As such, we implemented a manipulative experiment using an infaunal community with a known response (community composition and population abundances) to a mechanical disturbance (sediment scour), to determine the minimum sampling intensity required to detect differences in the infaunal community. Statistically significant differences (α = 0.05) between the infaunal community of the disturbed and reference replicates were observed in case studies consisting of 99 (4 samples per m2) to 5 (0.2 samples per m2) samples per treatment. Below 5 samples, the known statistical and biological difference was undetectable. However, at least 10 samples per treatment (0.4 samples per m2) were required for the observed infaunal community to be within 93% similarity of our most accurate assessments of the infaunal community. These findings suggest that studies attempting to identify disturbances may require a minimal sampling intensity equivalent to 0.2 samples per m2, while studies attempting to determine how the infaunal community varies with disturbances may require 0.4 samples per m2. These potential minimal required sampling intensities will be of use in the theoretical exploration of disturbances, as well as in applied conservation, restoration, and monitoring projects.

Population dynamics and methodological assessments from a 15-year period of Amphibian monitoring in British Columbia's Southern Gulf Islands.

With amphibian populations facing a multitude of threats, including habitat loss, climate change, invasive species and infectious diseases, it is important to identify valuable amphibian habitat and the imminent pressures these environments face. Between 2004 and 2019, 6 years of amphibian surveys were conducted at Greenburn, Roe and McLean lakes in the Southern Gulf Islands of British Columbia, Canada. We assessed (1) species composition and trends of native amphibians, including at-risk northern red-legged frog (Rana aurora); (2) observations of invasive American bullfrog (Lithobates catesbeianus); and (3) the efficacy of visual encounter and trapping survey methods in determining multi-species amphibian occupancy. The shallow, semi-ephemeral McLean Lake hosted more amphibian species and more breeding activity than the larger, deeper waters of Greenburn and Roe lakes. Despite multiple observations, bullfrogs have thus far not established a detectable population within these lakes, with the presence of native and introduced predators as potential contributing factors. Declining trends in occupancy of native populations of R. aurora, Pacific chorus frog (Pseudacris regilla) and rough-skinned newt (Taricha granulosa) were observed at all three lakes. Results varied within years by species and survey method, highlighting the importance of effective replication and employing complementary survey methods to optimize studies of amphibian occupancy. These observations also emphasize the value of shallow, small- to medium-sized waterbodies to native amphibian populations in the Southern Gulf Islands. As these waterbodies become increasingly threatened by global climate change and habitat degradation, the potential impacts of declining freshwater ecosystem health on amphibian populations should be considered.

Re-evaluation of solutions to the problem of unprofessionalism in peer review.

Our recent paper ( https://doi.org/10.1186/s41073-020-00096-x ) reported that 43% of reviewer comment sets (n=1491) shared with authors contained at least one unprofessional comment or an incomplete, inaccurate of unsubstantiated critique (IIUC). Publication of this work sparked an online (i.e., Twitter, Instagram, Facebook, and Reddit) conversation surrounding professionalism in peer review. We collected and analyzed these social media comments as they offered real-time responses to our work and provided insight into the views held by commenters and potential peer-reviewers that would be difficult to quantify using existing empirical tools (96 comments from July 24th to September 3rd, 2020). Overall, 75% of comments were positive, of which 59% were supportive and 16% shared similar personal experiences. However, a subset of negative comments emerged (22% of comments were negative and 6% were an unsubstantiated critique of the methodology), that provided potential insight into the reasons underlying unprofessional comments were made during the peer-review process. These comments were classified into three main themes: (1) forced niceness will adversely impact the peer-review process and allow for publication of poor-quality science (5% of online comments); (2) dismissing comments as not offensive to another person because they were not deemed personally offensive to the reader (6%); and (3) authors brought unprofessional comments upon themselves as they submitted substandard work (5%). Here, we argue against these themes as justifications for directing unprofessional comments towards authors during the peer review process. We argue that it is possible to be both critical and professional, and that no author deserves to be the recipient of demeaning ad hominem attacks regardless of supposed provocation. Suggesting otherwise only serves to propagate a toxic culture within peer review. While we previously postulated that establishing a peer-reviewer code of conduct could help improve the peer-review system, we now posit that priority should be given to repairing the negative cultural zeitgeist that exists in peer-review.

Quantifying professionalism in peer review.

BACKGROUND: The process of peer-review in academia has attracted criticism surrounding issues of bias, fairness, and professionalism; however, frequency of occurrence of such comments is unknown. METHODS: We evaluated 1491 sets of reviewer comments from the fields of "Ecology and Evolution" and "Behavioural Medicine," of which 920 were retrieved from the online review repository Publons and 571 were obtained from six early career investigators. Comment sets were coded for the occurrence of "unprofessional comments" and "incomplete, inaccurate or unsubstantiated critiques" using an a-prior rubric based on our published research. Results are presented as absolute numbers and percentages. RESULTS: Overall, 12% (179) of comment sets included at least one unprofessional comment towards the author or their work, and 41% (611) contained incomplete, inaccurate of unsubstantiated critiques (IIUC). CONCLUSIONS: The large number of unprofessional comments, and IIUCs observed could heighten psychological distress among investigators, particularly those at an early stage in their career. We suggest that development and adherence to a universally agreed upon reviewer code of conduct is necessary to improve the quality and professional experience of peer review.

Relationships between Potentially Toxic Elements in intertidal sediments and their bioaccumulation by benthic invertebrates.

The bioaccumulation of Potentially Toxic Elements (PTEs) by benthic invertebrates in estuarine sediments is poorly understood. We sampled and analysed PTEs in sediments and benthic invertebrates from five sites in the Skeena Estuary (British Columbia, Canada), including sites adjacent to an abandoned cannery and a decommissioned papermill. Our aim was to elucidate baseline levels of PTE concentrations at sites that may be recovering from disturbance associated with prior industrial development and identify organisms that could be used to biomonitor the impact of future industrial developments. There was no indication that sediments of the salmon cannery were polluted, but acidic sediments adjacent to the papermill contained elevated concentrations of Cd, Cr, Hg and Pb. Benthic invertebrate community assemblages confirm that sediments have mostly recovered from prior industrial development associated with discharge of papermill sludge. Overall, we did not observe any relationship between PTE concentrations in the sediment and PTE concentrations in invertebrate tissues. However, we did observe a negative relationship between sediment pH and the Biota-Sediment Accumulation Factor (BSAF) of most PTEs for Oregon pill bugs (Gnorimosphaeroma oregonensis). G. oregonensis, observed at all sites, feeds on the fibers associated with the papermill discharge. Thus, G. oregonensis is a useful biomonitors for quantifying the impact of the decommissioned papermill, and are candidate biomonitors for assessing the impact of similar industrial development projects on intertidal ecosystems.

Wildlife usage indicates increased similarity between reclaimed upland habitat and mature boreal forest in the Athabasca Oil Sands Region of Alberta, Canada.

While there is no denying that oil sands development in the Athabasca Oil Sands Region (AOSR) has large impacts upon the habitat it disturbs, developers are legally required to return this land to "an equivalent land capability." While still early in the process of reclamation, land undergoing reclamation offers an opportunity to study factors influencing reclamation success, as well as how reclaimed ecosystems function. As such, an Early Successional Wildlife Dynamics (ESWD) program was created to study how wildlife return to and use reclaimed upland boreal habitat in the AOSR. Wildlife data comprising 182 taxa of mammals, birds, and amphibians, collected between 2011 and 2017 and from five oil sands leases, were compared from multiple habitat types (burned [BRN], cleared [CLR], compensation lakes [COMP], logged [LOG], mature forest [MF], and reclaimed sites [REC]). Overall, similarity of wildlife communities in REC and MF plots varied greatly, even at 33 years since reclamation (31-62% with an average of 52%). However, an average community similarity of 52% so early in the successional process suggests that current reclamation efforts are progressing towards increased similarity compared to mature forest plots. Conversely, our data suggest that REC plots are recovering differently than plots impacted by natural (BRN) or other anthropogenic disturbances (LOG), which is likely due to differences associated with soil reconstruction and development on reclaimed plots. Regardless of the developmental trajectory of reclaimed habitats, progression towards increased wildlife community similarity at REC and MF plots is apparent in our data. While there is no expectation that reclaimed upland habitats will resemble or function identically to naturally occurring boreal forest, the degree of similarity observed in our study suggests that comparable ecological functionality is possible, increasing the probability that oil sands operators will be able to fulfill their regulatory requirements and duty to reclaim regarding wildlife and wildlife habitat.

Sound the alarm: A meta-analysis on the effect of aquatic noise on fish behavior and physiology.

The aquatic environment is increasingly bombarded by a wide variety of noise pollutants whose range and intensity are increasing with each passing decade. Yet, little is known about how aquatic noise affects marine communities. To determine the implications that changes to the soundscape may have on fishes, a meta-analysis was conducted focusing on the ramifications of noise on fish behavior and physiology. Our meta-analysis identified 42 studies that produced 2,354 data points, which in turn indicated that anthropogenic noise negatively affects fish behavior and physiology. The most predominate responses occurred within foraging ability, predation risk, and reproductive success. Additionally, anthropogenic noise was shown to increase the hearing thresholds and cortisol levels of numerous species while tones, biological, and environmental noise were most likely to affect complex movements and swimming abilities. These findings suggest that the majority of fish species are sensitive to changes in the aquatic soundscape, and depending on the noise source, species responses may have extreme and negative fitness consequences. As such, this global synthesis should serve as a warning of the potentially dire consequences facing marine ecosystems if alterations to aquatic soundscapes continue on their current trajectory.

Community assessment techniques and the implications for rarefaction and extrapolation with Hill numbers.

Diversity estimates play a key role in ecological assessments. Species richness and abundance are commonly used to generate complex diversity indices that are dependent on the quality of these estimates. As such, there is a long-standing interest in the development of monitoring techniques, their ability to adequately assess species diversity, and the implications for generated indices. To determine the ability of substratum community assessment methods to capture species diversity, we evaluated four methods: photo quadrat, point intercept, random subsampling, and full quadrat assessments. Species density, abundance, richness, Shannon diversity, and Simpson diversity were then calculated for each method. We then conducted a method validation at a subset of locations to serve as an indication for how well each method captured the totality of the diversity present. Density, richness, Shannon diversity, and Simpson diversity estimates varied between methods, despite assessments occurring at the same locations, with photo quadrats detecting the lowest estimates and full quadrat assessments the highest. Abundance estimates were consistent among methods. Sample-based rarefaction and extrapolation curves indicated that differences between Hill numbers (richness, Shannon diversity, and Simpson diversity) were significant in the majority of cases, and coverage-based rarefaction and extrapolation curves confirmed that these dissimilarities were due to differences between the methods, not the sample completeness. Method validation highlighted the inability of the tested methods to capture the totality of the diversity present, while further supporting the notion of extrapolating abundances. Our results highlight the need for consistency across research methods, the advantages of utilizing multiple diversity indices, and potential concerns and considerations when comparing data from multiple sources.

Relative Importance of Biotic and Abiotic Forces on the Composition and Dynamics of a Soft-Sediment Intertidal Community.

Top-down, bottom-up, middle-out and abiotic factors are usually viewed as main forces structuring biological communities, although assessment of their relative importance, in a single study, is rarely done. We quantified, using multivariate methods, associations between abiotic and biotic (top-down, bottom-up and middle-out) variables and infaunal population/community variation on intertidal mudflats in the Bay of Fundy, Canada, over two years. Our analysis indicated that spatial structural factors like site and plot accounted for most of the community and population variation. Although we observed a significant relationship between the community/populations and the biotic and abiotic variables, most were of minor importance relative to the structural factors. We suggest that community and population structure were relatively uncoupled from the structuring influences of biotic and abiotic factors in this system because of high concentrations of resources that sustain high densities of infauna and limit exploitative competition. Furthermore, we hypothesize that the infaunal community primarily reflects stochastic spatial events, namely a "first come, first served" process.

Spatial variation in population structure and its relation to movement and the potential for dispersal in a model intertidal invertebrate.

Dispersal, the movement of an individual away from its natal or breeding ground, has been studied extensively in birds and mammals to understand the costs and benefits of movement behavior. Whether or not invertebrates disperse in response to such attributes as habitat quality or density of conspecifics remains uncertain, due in part to the difficulties in marking and recapturing invertebrates. In the upper Bay of Fundy, Canada, the intertidal amphipod Corophium volutator swims at night around the new or full moon. Furthermore, this species is regionally widespread across a large spatial scale with site-to-site variation in population structure. Such variation provides a backdrop against which biological determinants of dispersal can be investigated. We conducted a large-scale study at nine mudflats, and used swimmer density, sampled using stationary plankton nets, as a proxy for dispersing individuals. We also sampled mud residents using sediment cores over 3 sampling rounds (20-28 June, 10-17 July, 2-11 August 2010). Density of swimmers was most variable at the largest spatial scales, indicating important population-level variation. The smallest juveniles and large juveniles or small adults (particularly females) were consistently overrepresented as swimmers. Small juveniles swam at most times and locations, whereas swimming of young females decreased with increasing mud presence of young males, and swimming of large juveniles decreased with increasing mud presence of adults. Swimming in most stages increased with density of mud residents; however, proportionally less swimming occurred as total mud resident density increased. We suggest small juveniles move in search of C. volutator aggregations which possibly act as a proxy for better habitat. We also suggest large juveniles and small adults move if potential mates are limiting. Future studies can use sampling designs over large spatial scales with varying population structure to help understand the behavioral ecology of movement, and dispersal in invertebrate taxa.

Mercury and methylmercury bioaccumulation by polychaete worms is governed by both feeding ecology and mercury bioavailability in coastal mudflats.

Polychaete worms are abundant in many mudflats but their importance to coastal food web Hg biomagnification is not known. We sampled sediments and polychaete worms from mudflats in the Bay of Fundy to investigate the bioaccumulation of mercury (Hg) and methylmercury (MeHg) in the coastal invertebrate food web. Hg concentrations in the sediments were low (<20 µg kg(-1)). Labile Hg (methanol/KOH sediment extraction) in surface sediments (0-1 cm) was positively correlated with Hg bioaccumulation by surface sediment-ingesting polychaetes but, surprisingly, there was a negative correlation between δ(15)N (i.e. trophic level) and THg bioaccumulation factors in polychaete worms. Worms feeding on deeper sediments contained the greatest MeHg concentrations (69.6 µg kg(-1)). Polychaetes are an important vector for Hg biomagnification to the coastal avian food web. This research demonstrates that feeding depth and method of feeding are more important than trophic position or sediment Hg concentrations for predicting Hg bioaccumulation.