Photoelectrochemical water oxidation by a MOF/semiconductor composite.

Artificial photosynthesis is one of the most promising forms of renewable fuel production, due to the abundance of water, carbon dioxide, and sunlight. However, the water oxidation reaction remains a significant bottleneck due to the high thermodynamic and kinetic requirements of the four-electron process. While significant work has been done on the development of catalysts for water splitting, many of the catalysts reported to date operate at high overpotentials or with the use of sacrificial oxidants to drive the reaction. Here, we present a catalyst embedded metal-organic framework (MOF)/semiconductor composite that performs photoelectrochemical oxidation of water at a formal underpotential. Ru-UiO-67 (where Ru stands for the water oxidation catalyst [Ru(tpy)(dcbpy)OH2]2+ (tpy = 2,2':6',2''-terpyridine, dcbpy = 5,5-dicarboxy-2,2'-bipyridine)) has been previously shown to be active for water oxidation under both chemical and electrochemical conditions, but here we demonstrate, for the first time, incorporation of a light harvesting n-type semiconductor as a base photoelectrode. Ru-UiO-67/WO3 is active for photoelectrochemical water oxidation at a thermodynamic underpotential (η ≈ 200 mV; Eonset = 600 mV vs. NHE), and incorporation of a molecular catalyst onto the oxide layer increases efficiency of charge transport and separation over bare WO3. The charge-separation process was evaluated with ultrafast transient absorption spectroscopy (ufTA) and photocurrent density measurements. These studies suggest that a key contributor to the photocatalytic process involves a hole transfer from excited to Ru-UiO-67. To our knowledge, this is the first report of a MOF-based catalyst active for water oxidation at a thermodynamic underpotential, a key step towards light-driven water oxidation.

Vibrational spectroscopy investigation of defects in Zr- and Hf-UiO-66.

Defect engineering in metal-organic framework compounds has allowed for improvements in catalysis-based functionalities, gas sensing, and gas storage. Metal-organic framework UiO-66 compounds with Zr- and Hf-based metal secondary building units were studied with Raman and infrared vibrational spectroscopy. Missing linker and missing cluster defects were engineered into the crystal structure via a modulated synthesis technique. Missing cluster defects in Hf-UiO-66 are first characterized by powder X-ray diffraction (PXRD) whereby two low-angle peaks were fit to extract the relative quantity of reo topology in four defective samples. A monotonic red-shift of the Raman-active Hf-O coordination bond vibration is interpreted as a signature of missing cluster defects, resulting from less-rigid charge-balancing monocarboxylate formate ions replacing the dicarboxylate linker molecule. This signature is hypothesized to be independent of the topology in which the defects appear. Missing linker defects in Zr-UiO-66 are characterized by infrared absorption spectroscopy by the quenching of C-C and C-H vibrational modes confined to the linker molecule. Together, Raman and infrared vibrational spectroscopies coupled with standard characterization techniques are employed to directly probe the nature of defects as well as offer new characterization tools for missing cluster defects in UiO-66.

A Potential Roadmap to Integrated Metal Organic Framework Artificial Photosynthetic Arrays.

Metal organic frameworks (MOFs), a class of coordination polymers, gained popularity in the late 1990s with the efforts of Omar Yaghi, Richard Robson, Susumu Kitagawa, and others. The intrinsic porosity of MOFs made them a clear platform for gas storage and separation. Indeed, these applications have dominated the vast literature in MOF synthesis, characterization, and applications. However, even in those early years, there were hints to more advanced applications in light-MOF interactions and catalysis. This perspective focuses on the combination of both light-MOF interactions and catalysis: MOF artificial photosynthetic assemblies. Light absorption, charge transport, H2O oxidation, and CO2 reduction have all been previously observed in MOFs; however, work toward a fully MOF-based approach to artificial photosynthesis remains out of reach. Discussed here are the current limitations with MOF-based approaches: diffusion through the framework, selectivity toward high value products, lack of integrated studies, and stability. These topics provide a roadmap for the future development of fully integrated MOF-based assemblies for artificial photosynthesis.

Aqueous-Phase Destruction of Nerve-Agent Simulants at Copper Single Atoms in UiO-66.

Metal-organic frameworks (MOFs) have shown great success in aqueous-phase hydrolysis of nerve agents, with some even showing promise in the gas phase. However, both aqueous-phase reactivity and gas-phase reactivity are hindered because of the binding of the hydrolyzed products to the MOF nodes in a stable, bridging configuration, which limits turnover. Single transition-metal atoms in MOFs have been a growing field of interest for catalytic applications, and single atoms have been proposed to prevent the unwanted bridged conformation and increase catalytic turnover. To date, there has been little experimental evidence to support the hypothesis. Herein, we report two copper single atom-modified UiO-66 MOFs for nerve-agent simulant degradation. Despite the capping of highly active Zr4+ nodes with fewer Lewis acidic Cun+ atoms, the reactivity of both CuMOFs approaches that of native UiO-66 under aqueous conditions. Computational studies reveal that the Cu coordination environment impairs product inhibition with respect to the native MOF.

An Aluminum-Based Metal-Organic Cage for Cesium Capture.

Metal-organic cages are a class of supramolecular structures that often require the careful selection of organic linkers and metal nodes. Of this class, few examples of metal-organic cages exist where the nodes are composed of main group metals. Herein, we have prepared an aluminum-based metal-organic cage, H8[Al8(pdc)8(OAc)8O4] (Al-pdc-AA), using inexpensive and commercially available materials. The cage formation was achieved via solvothermal self-assembly of solvated aluminum and pyridine-dicarboxylic linkers in the presence of a capping agent, acetic acid. The obtained supramolecular structure was characterized by single-crystal X-ray diffraction (SCXRD), thermogravimetric analysis, and NMR spectroscopy. Based on crystal structure and computational analyses, the cage has a 3.7 Å diameter electron-rich cavity suitable for the binding of cations such as cesium (ionic radius of 1.69 Å). The host-guest interactions were probed with 1H and 133Cs NMR spectroscopy in DMSO, where at low concentrations, Cs+ binds to Al-pdc-AA in a 1:1 ratio. The binding site was identified from the crystal structure of CsH7[Al8(pdc)8(OAc)8O4] (Cs+⊂Al-pdc-AA), and a binding affinity of ∼106-107 M-1 was determined from NMR titration experiments. The Al-pdc-AA showed improved selectivity for cesium binding over alkali metal cations (Cs+ > Rb+ > K+ ≫ Na+ ∼ Li+). Collectively, the study reports a novel aluminum cage that can serve as a promising host for efficient and selective cesium removal.

Reversible Dissociation for Effective Storage of Diborane Gas within the UiO-66-NH2 Metal-Organic Framework.

There is an acute need for materials that can store the toxic and highly reactive diborane gas at room temperature. In this work, the interfacial chemistry leading to safe and reversible storage of diborane (B2H6) in the UiO-66-NH2 metal-organic framework (MOF) was investigated via in situ transmission infrared (IR) spectroscopy, temperature-programmed desorption (TPD), and electronic structure calculations. The infrared spectrum of B2H6 adsorbed within UiO-66-NH2 indicates hydrogen bonding with the µ3-OH groups of the MOF nodes and chemisorption at the -NH2 groups of the MOF linkers. The conversion of physisorbed to chemisorbed diborane, as observed through a spectroscopically unique intermediate species, occurred over a broad temperature regime from 80 to 410 K. During B2H6-TPD studies, both the weakly and strongly bound species were found to desorb exclusively as molecular B2H6. Infrared spectroscopic studies, performed during diborane adsorption and reaction, combined with electronic structure calculations, revealed that chemisorption occurred via a reversible dissociation reaction involving a "half-open" B2H6 intermediate and resulted in the formation of two NH2-bound BH3 units, which leave the MOF as B2H6 via recombinative desorption. The close spacing of -NH2 groups in the UiO-66-NH2 MOF is key to enabling high-temperature chemisorptive storage of B2H6, and the spatial arrangement of the amine groups has a significant effect on the dissociation energy profile. This work demonstrates that reversible dissociation of B2H6 on precisely engineered, nucleophile-rich materials represents a promising pathway to diborane stabilization and long-term storage.

Defect Level and Particle Size Effects on the Hydrolysis of a Chemical Warfare Agent Simulant by UiO-66.

Defect engineering in metal-organic frameworks (MOFs) has recently become an area of significant research due to the possibility of enhancing material properties such as internal surface area and catalytic activity while maintaining stable 3D structures. Through a modulator screening study, the model Zr4+ MOF, UiO-66, has been synthesized with control of particle sizes (100-1900 nm) and defect levels (2-24%). By relating these properties, two series were identified where one property remained constant, allowing for independent analysis of the defect level or particle size, which frequently change coincident with the modulator choice. The series were used to compare UiO-66 reactivity for the hydrolysis of a chemical warfare agent simulant, dimethyl 4-nitrophenylphosphate (DMNP). The rate of DMNP hydrolysis displayed high dependence on the external surface area, supporting a reaction dominated by surface interactions. Moderate to high concentrations of defects (14-24%) allow for the accessibility of some interior MOF nodes but do not substantially promote diffusion into the framework. Individual control of defect levels and particle sizes through modulator selection may provide useful materials for small molecular catalysis and provide a roadmap for similar engineering of other zirconium frameworks.

Understanding the Mechanical Reinforcement of Metal-Organic Framework-Polymer Composites: The Effect of Aspect Ratio.

The aspect ratio (AR) of filler particles is one of the most critical determinants for the mechanical properties of particle-reinforced polymer composites. However, it has been challenging to solely study the effect of particle AR due to the difficulties of controlling AR without altering the physical and chemical properties of the particle. Herein, we synthesized PCN-222, a zirconium-based porphyrinic metal-organic framework (MOF) with preferential longitudinal growth as a series of particles with ARs increasing from 3.4 to 54. The synthetic MOF conditions allowed for the chemical properties of the particles to remain constant over the series. The particles were employed as reinforcers for poly(methyl methacrylate) (PMMA). MOF-polymer composite films were fabricated using doctor-blading techniques, which facilitated particle dispersion and alignment in the PMMA matrix, as revealed by optical microscopy and wide-angle X-ray diffraction. Mechanical measurements showed that both elastic and dynamic moduli increased with particle AR and particle concentrations but started to decrease as particle loading increased beyond 0.5 wt % (1.12 vol %). The data obtained at low particle loadings were fitted well with the Halpin-Tsai model. In contrast, the percolation model and the Cox model were unable to adequately fit the data, indicating the mechanical reinforcement in our system mainly originated from efficient load transfer between particles and the matrix in the particle orienting direction. Finally, we showed that the thermal stability of composite films increased with the addition of MOF particles because of the high thermal degradation temperature and restricted polymer chain mobility.

In Situ Nuclear Magnetic Resonance Investigation of Molecular Adsorption and Kinetics in Metal-Organic Framework UiO-66.

Thermodynamic and kinetic properties of molecular adsorption and transport in metal-organic frameworks (MOFs) are crucially important for many applications, including gas adsorption, filtration, and remediation of harmful chemicals. Using the in situ 1H nuclear magnetic resonance (NMR) isotherm technique, we measured macroscopic thermodynamic and kinetic properties such as isotherms and rates of mass transfer while simultaneously obtaining microscopic information revealed by adsorbed molecules via NMR. Upon investigating isopropyl alcohol adsorption in MOF UiO-66 by in situ NMR, we obtained separate isotherms for molecules adsorbed at distinct environments exhibiting distinct NMR characteristics. A mechanistic view of the adsorption process is obtained by correlating such resolved isotherms with the cage structure effect on the nucleus-independent chemical shift, molecular dynamics such as the crowding effect at high loading levels, and the loading level dependence of the mass transfer rate as measured by NMR and elucidated by classical Monte Carlo simulations.

Modelling drug adsorption in metal-organic frameworks: the role of solvent.

Solvent plays a key role in biological functions, catalysis, and drug delivery. Metal-organic frameworks (MOFs) due to their tunable functionalities, porosities and surface areas have been recently used as drug delivery vehicles. To investigate the effect of solvent on drug adsorption in MOFs, we have performed integrated computational and experimental studies in selected biocompatible MOFs, specifically, UiO-AZB, HKUST-1 (or CuBTC) and NH2-MIL-53(Al). The adsorption of three drugs, namely, 5-fluorouracil (5-FU), ibuprofen (IBU), and hydroxyurea (HU) were performed in the presence and absence of the ethanol. Our computational predictions, at 1 atmospheric pressure, showed a reasonable agreement with experimental studies performed in the presence of ethanol. We find that in the presence of ethanol the drug molecules were adsorbed at the interface of solvent and MOFs. Moreover, the computationally calculated adsorption isotherms suggested that the drug adsorption was driven by electrostatic interactions at lower pressures (<10-4 Pa). Our computational predictions in the absence of ethanol were higher compared to those in the presence of ethanol. The MOF-adsorbate interaction (U HA) energy decreased with decrease in the size of a drug molecule in all three MOFs at all simulated pressures. At high pressure the interaction energy increases with increase in the MOFs pore size as the number of molecules adsorbed increases. Thus, our research shows the important role played by solvent in drug adsorption and suggests that it is critical to consider solvent while performing computational studies.

Role of Spin-Orbit Coupling in Long Range Energy Transfer in Metal-Organic Frameworks.

Metal-organic frameworks (MOFs) are emerging as a promising platform for solar energy conversion applications. Their potential utilization as efficient chromophores in artificial photosynthesis is closely related to the understanding of light-harvesting and energy transfer processes that occur within these molecular scaffolds. Herein, we present the photophysical investigation of Ru(II), Ir(III), and Os(II) polypyridyl complexes incorporated into the backbone of UiO-67. In this work, we systematically study the effect of spin-orbit coupling on dipole-dipole energy transfer in MOFs using steady-state and time-resolved spectroscopic techniques. The results of our work indicate successful triplet-to-singlet energy transfer and a sizable increase in the transfer kinetics and critical distance, as direct consequences of strong spin-orbit couplings. Remarkably, the reported R0 value for OsDCBPY (R0 = 88 ± 10 Å) represents one of the largest Förster distances observed in an MOF. Collectively, this work contributes to the general knowledge of energy transfer in materials and provides groundwork for efficient utilization in artificial photosynthetic assemblies.

Nickel(II)-modified covalent-organic framework film for electrocatalytic oxidation of 5-hydroxymethylfurfural (HMF).

Electrochemical oxidation of 5-hydroxymethylfurfural (HMF) is a promising synthetic route for 2,5-furandicarboxylic acid (FDCA) production. Here, we prepared a nickel(ii)-modified covalent-organic framework (COF) film TpBpy-Ni@FTO for HMF electrooxidation. With a high conversion of HMF (96%), TpBpy-Ni@FTO afforded a 58% FDCA yield. This work underlines the great potential of COF-based materials in electrocatalysis.

PCN-222 Metal-Organic Framework Nanoparticles with Tunable Pore Size for Nanocomposite Reverse Osmosis Membranes.

Nanorods of PCN-222, a large-pore, zirconium-based porphyrinic metal-organic framework (MOF), have been prepared through coordination modulation-controlled crystal growth through competing monodentate ligands known as modulators-for incorporation into reverse osmosis thin-film nanocomposite (TFN) membranes. Postsynthetic modification of the MOF node through binding of myristic acid (MA) altered channel dimensions and pore size distribution. The extent of MOF modification was characterized through Brunauer-Emmett-Teller gas sorption and 1H NMR following digestion of the particles. TFN membranes containing PCN-222 nanoparticles modified with varying levels of MA were fabricated via dispersion in the aqueous phase during interfacial polymerization, and the resulting flux and rejection performance of each membrane were evaluated. Increased water flux was observed with increasing MA content in the PCN-222 nanorods. Up to 95% increase in water flux was observed for a TFN containing 0.01 wt % loading of PCN-222 nanorods with a 10:1 MA to linker ratio, while maintaining high salt rejection. The flux change was attributed to tunable water transport through the nanorod pore structure and also through rapid water transport pathways at the nanorod-polymer interface.

Synthesis and biophysical characterization of oligonucleotides modified with O2'-alkylated RNA monomers featuring substituted pyrene moieties.

Over the past three decades, a wide range of pyrene-functionalized oligonucleotides have been developed and explored for potential applications in material science and nucleic acid diagnostics. Our efforts have focused on their possible use as components of Invader probes, i.e., DNA duplexes with +1 interstrand zipper arrangements of intercalator-functionalized nucleotides. We have previously demonstrated that Invader probes based on 2'-O-(pyren-1-yl)methyl-RNA monomers are energetically activated for sequence-unrestricted recognition of chromosomal DNA targets under non-denaturing conditions. As part of ongoing efforts towards delineating structure-property relationships and optimizing Invader probes, we report the synthesis and biophysical characterization of oligodeoxyribonucleotides (ONs) modified with 2'-O-(7-neo-pentylpyren-1-yl)methyl-uridine monomer V and 2'-O-(7-tert-butyl-1-methoxypyren-5-yl)methyl-uridine monomer Y. ONs modified with monomer V display increased DNA affinity (ΔTm up to +10.5 °C), while Y-modified ONs display lower DNA affinity and up to 22-fold increases in fluorescence emission upon RNA binding. Although these monomers display limited potential as building blocks for Invader probes, their photophysical properties render them of interest for diagnostic RNA-targeting applications.

Bismuth(iii)-thiophenedicarboxylates as host frameworks for lanthanide ions: synthesis, structural characterization, and photoluminescent behavior.

Three bismuth-2,5-thiophenedicarboxylates (Bi-TDC) and two europium-2,5-thiophenedicarboxylates (Eu-TDC) were synthesized under ambient conditions. The structures were determined through single crystal X-ray diffraction, and three of the phases were further characterized by powder X-ray diffraction, Raman spectroscopy, and thermogravimetric analysis. Reactions of bismuth nitrate, 2,5-thiophenedicarboxylate, and pyridine in an acidic solution of acetic acid and ethanol yield Hpy[Bi(TDC)2(H2O)]·1.5H2O (1), whereas reactions in a water/ethanol mixture produce a minor phase, [Hpy]3[Bi2(TDC)4(HTDC)(H2O)]·xH2O (2) along with a major product, (Hpy)2[Bi(TDC)2(HTDC)]·0.36H2O (3). The structures of 1-3 are all built from anionic Bi-TDC chains that are further bridged through additional TDC linkages into interpenetrated 2D sheets. Addition of an aqueous lanthanide solution to the reaction mixtures that yielded 1 and 2-3 resulted in the formation of doped phases, Hpy[Bi1-xLnx(TDC)2(H2O)]·1.5H2O (Bi1-xLnx-1), where Ln = Nd, Sm, Eu, Tb, Dy, and Yb, and (Hpy)2[Bi0.99Eu0.01 (TDC)2(HTDC)]·0.36H2O (Bi0.99Eu0.01-3). Using europium nitrate rather than the bismuth precursor resulted in the formation of two homometallic europium based phases, [Eu(TDC)(NO3)(H2O)]n (4) and [Eu2(TDC)3(H2O)9]·5H2O (5), which adopt an extended 3D network and an interpenetrated 2D structure, respectively. Photophysical measurements were carried out for 1 and the lanthanide containing phases and quantum yield and lifetime values were determined for the visible light emitters. Herein, the structural chemistry, spectroscopic properties, and luminescence of the bismuth phases, their lanthanide doped analogs, and the europium compounds are presented.

Recognition of mixed-sequence DNA using double-stranded probes with interstrand zipper arrangements of O2'-triphenylene- and coronene-functionalized RNA monomers.

Development of hybridization-based probes that enable recognition of specific mixed-sequence double-stranded DNA (dsDNA) regions is of considerable interest due to their potential applications in molecular biology, biotechnology, and medicine. We have recently demonstrated that nucleic acid duplexes with +1 interstrand zipper arrangements of intercalator-functionalized nucleotides such as 2'-O-(pyren-1-yl)methyl RNA monomers are inherently activated for recognition of mixed-sequence dsDNA targets, including chromosomal DNA. In the present work, we follow up on our previous structure-activity relationship studies and explore if the dsDNA-recognition efficiency of these so-called Invader probes can be improved by using larger intercalators than pyrene. Oligodeoxyribonucleotides modified with 2'-O-(triphenylen-2-yl)methyl-uridine monomer X and 2'-O-(coronen-1-yl)methyl-uridine monomer Z form extraordinarily stabilized duplexes with complementary DNA (ΔTm's per modification of up to 13 °C and 20 °C, respectively). Invader probes based on X- and Z-monomers are shown to recognize model dsDNA targets with exceptional binding specificity, but are less efficient than reference probes modified with 2'-O-(pyren-1-yl)methyl-uridine monomer Y. The insight from this study will inform further optimization of Invader probes.

The African Crane Database (1978-2014): Records of three threatened crane species (Family: Gruidae) from southern and eastern Africa.

BACKGROUND: The International Crane Foundation (ICF) / Endangered Wildlife Trust's (EWT) African Crane Conservation Programme has recorded 26 403 crane sightings in its database from 1978 to 2014. This sightings collection is currently ongoing and records are continuously added to the database by the EWT field staff, ICF/EWT Partnership staff, various partner organizations and private individuals. The dataset has two peak collection periods: 1994-1996 and 2008-2012. The dataset collection spans five African countries: Kenya, Rwanda, South Africa, Uganda and Zambia; 98% of the data were collected in South Africa. Georeferencing of the dataset was verified before publication of the data. The dataset contains data on three African crane species: Blue Crane Anthropoides paradiseus, Grey Crowned Crane Balearica regulorum and Wattled Crane Bugeranus carunculatus. The Blue and Wattled Cranes are classified by the IUCN Red List of Threatened Species as Vulnerable and the Grey Crowned Crane as Endangered. NEW INFORMATION: This is the single most comprehensive dataset published on African Crane species that adds new information about the distribution of these three threatened species. We hope this will further aid conservation authorities to monitor and protect these species. The dataset continues to grow and especially to expand in geographic coverage into new countries in Africa and new sites within countries. The dataset can be freely accessed through the Global Biodiversity Information Facility data portal.

Recognition of double-stranded DNA using energetically activated duplexes with interstrand zippers of 1-, 2- or 4-pyrenyl-functionalized O2'-alkylated RNA monomers.

Despite advances with triplex-forming oligonucleotides, peptide nucleic acids, polyamides and--more recently--engineered proteins, there remains an urgent need for synthetic ligands that enable specific recognition of double-stranded (ds) DNA to accelerate studies aiming at detecting, regulating and modifying genes. Invaders, i.e., energetically activated DNA duplexes with interstrand zipper arrangements of intercalator-functionalized nucleotides, are emerging as an attractive approach toward this goal. Here, we characterize and compare Invaders based on 1-, 2- and 4-pyrenyl-functionalized O2'-alkylated uridine monomers X-Z by means of thermal denaturation experiments, optical spectroscopy, force-field simulations and recognition experiments using DNA hairpins as model targets. We demonstrate that Invaders with +1 interstrand zippers of X or Y monomers efficiently recognize mixed-sequence DNA hairpins with single nucleotide fidelity. Intercalator-mediated unwinding and activation of the double-stranded probe, coupled with extraordinary stabilization of probe-target duplexes (ΔT(m)/modification up to +14.0 °C), provides the driving force for dsDNA recognition. In contrast, Z-modified Invaders show much lower dsDNA recognition efficiency. Thus, even very conservative changes in the chemical makeup of the intercalator-functionalized nucleotides used to activate Invader duplexes, affects dsDNA-recognition efficiency of the probes, which highlights the importance of systematic structure-property studies. The insight from this study will guide future design of Invaders for applications in molecular biology and nucleic acid diagnostics.