Pepper mild mottle virus as an effective tool in microbial source tracking for deficient domestic on-site water treatment systems.

Pollution from domestic on-site wastewater treatment systems (OWTS) is a significant contaminant pressure in many rural catchments. However, due to their design, and dispersed proliferation, it is difficult to assess their impact. Water testing methodologies employ bacterial culturing methods and chemical analysis which may lose resolution and/or specificity being confounded by diffuse agricultural sources within a rural environment. In this study, we successfully assessed the applicability of Pepper Mild Mottle Virus (PMMoV) as a human faecal source tracker for deficient on-site wastewater treatment systems. The transport of PMMoV was first studied in the effluent of a 30 cm deep soil column which was dosed for 510 days with primary influent from a conventional septic system. The removal of PMMoV through the 30 cm deep soil column was quantified with a 5-day seeding trial employing primary influent mixed with PMMoV sourced from Tabasco pepper product ®. The trial was then carried out at field scale with the seeding solution dosed into an operational percolation trench receiving septic tank effluent which had been instrumented for porewater sampling. Samples were taken at depths of 10 cm, 30 cm, and 50 cm across the length of the trench at distances of 1 m, 7.5 m, and 17.5 m from the inlet of the trench. PMMoV was detected on all days of the trial, with a peak concentration of 1 × 106 found at the rear of the trench on day 2 of the seeding trial. Finally, to assess the effectiveness of PPMoV as a microbial source tracking tool from a water receptor perspective, three rural catchments with high densities of OWTSs were sampled and analysed for hourly variations in biological parameters which included total coliforms, Escherichia coli, PMMoV, and chemical parameters total organic carbon, total nitrogen, and total carbon. PMMoV was detected in all river samples over a 24-hour period, thereby indicating its suitability as a tracer of human wastewater effluent in such environments with multiple diffuse sources.

Wastewater-based epidemiology (WBE) for SARS-CoV-2 - A review focussing on the significance of the sewer network using a Dublin city catchment case study.

Wastewater-based epidemiology (WBE) has been employed by many countries globally since the beginning of the COVID-19 pandemic in order to assess the benefits of this surveillance tool in the context of informing public health measures. WBE has been successfully employed to detect SARS-CoV-2 at wastewater treatment plants for community-wide surveillance, as well as in smaller catchments and institutions for targeted surveillance of COVID-19. In addition, WBE has been successfully used to detect new variants, identify areas of high infection levels, as well as to detect new infection outbreaks. However, due to to the large number of inherent uncertainties in the WBE process, including the inherent intricacies of the sewer network, decay of the virus en route to a monitoring point, levels of recovery from sampling and quantification methods, levels of faecal shedding among the infected population, as well as population normalisation methods, the usefulness of wastewater samples as a means of accurately quantifying SARS-CoV-2 infection levels among a population remains less clear. The current WBE programmes in place globally will help to identify new areas of research aimed at reducing the levels of uncertainty in the WBE process, thus improving WBE as a public health monitoring tool for future pandemics. In the meantime, such programmes can provide valuable comparisons to clinical testing data and other public health metrics, as well being an effective early warning tool for new variants and new infection outbreaks. This review includes a case study of sampled wastewater from the sewer network in Dublin, Ireland, during a peak infection period of COVID-19 in the city, which evaluates the different uncertainties in the WBE process.

Sludge accumulation rates in septic tanks used as part of the on-site treatment of domestic wastewater in a northern maritime temperate climate.

On-site domestic wastewater treatment systems (DWTS) are used by a significant fraction of the world's population and are used by one third of the population in Ireland. The effective operation of these DWTS requires regular desludging and so knowledge of expected filling rates is essential for both the homeowner as well as the municipalities which accept this sludge in licensed premises; yet few studies have attempted to quantify the sludge accumulation in such decentralized systems. Field studies were carried out on 27 septic tanks across Ireland to quantify sludge accumulation rates from which optimum desludging frequencies for use in Ireland have then been determined. Sludge accumulation was found to be very high in the first 12 months of system operation (approximately 250 L/person/y) but dropped off to below 150 L/person/y after 2 years. Such volumetric accumulation rates appear high compared to the few other reported international studies; however, measured solids accumulation rates, were low compared to international estimates, ranging from 1 to 10 kg/person/y. An equation for optimal desludging frequencies between 3 and 5 years has been formulated for various tank sizes and occupancy based on the Irish field data and previous international research - 5 years being the maximum allowable interval between desludging before the limiting volume of 50% sludge in the tank is reached.

Variability in fluvial suspended and streambed sediment phosphorus fractions among small agricultural streams.

Agriculture is a major source of sediment and particulate phosphorus (P) inputs to freshwaters. Distinguishing between P fractions in sediment can aid in understanding its eutrophication risk. Although streams and rivers are important parts of the P cycle in agricultural catchments, streambed sediment and especially fluvial suspended sediment (FSS) and its P fractions are less studied. To address this knowledge gap, seasonal variations in FSS P fractions and their relation to water quality and streambed sediment were examined in three Swedish agricultural headwater catchments over 2 yr. Sequential fractionation was used to characterize P fractions in both streambed sediment and FSS. All catchments had similar annual P losses (0.4-0.8 kg ha-1 ), suspended solids (124-183 mg L-1 ), and FSS total P concentrations (1.15-1.19 mg g-1 ). However, distribution of P fractions and the dominant P fractions in FSS differed among catchments (p < .05), which was most likely dependent on differences in catchment geology, clay content, external P sources, and flow conditions. The most prominent seasonal pattern in all catchments was found for iron-bound P, with high concentrations during low summer flows and low concentrations during winter high flows. Streambed sediment P fractions were in the same concentration ranges as in FSS, and the distribution of the fractions differed between catchments. This study highlights the need to quantify P fractions, not just total P in FSS, to obtain a more complete understanding of the eutrophication risk posed by agricultural sediment losses.

Application of microcosm experiments for quantifying lateral flow and evapotranspiration on recovering bog ecotypes.

The importance of characterizing the ecohydrological interactions in natural, damaged/drained, and restored bogs is underscored by the importance of peatlands to global climate change and the growing need for peatland restoration. An understudied aspect of peatland ecohydrology is how shallow lateral flow impacts local hydrological conditions and water balance, which are critical for peatland restoration success. A novel method is presented using microcosms installed in the field to understand the dynamics of shallow lateral flow. Analysis of the difference in water table fluctuation inside and outside the microcosm experimental areas allowed the water balance to be constrained and the calculation of lateral flow and evapotranspiration. As an initial demonstration of this method, a series of four microcosm experiments were set up in locations with differing ecological quality and land management histories, on a raised bog complex in the midlands of Ireland. The timing and magnitude of the lateral flow differed considerably between locations with differing ecological conditions, indicating that shallow lateral flow is an important determining factor in the ecohydrological trajectory of a recovering bog system. For locations where Sphagnum spp. moss layer was present, a slow continuous net lateral input of water from the upstream catchment area supported the water table during drought periods, which was not observed in locations lacking Sphagnum. Consistent with other studies, evapotranspiration was greater in locations with a Spaghnum moss layer than in locations with a surface of peat soil.

The influence of pre-treatment on biomat development in soil treatment units.

Soil treatment units (STUs) receiving effluent from on-site wastewater treatment systems (OWTSs) rely on the gradual development of a microbial biomat/biozone at the infiltrative surface for optimal effluent distribution and pollutant attenuation. Here, we present the first direct measurement of gradual biomat development in the field in STU trenches receiving either primary (PE) or secondary treated effluent (SE) under identical environmental, hydrological and subsoil conditions. Two domestic OWTSs were constructed in Ireland and monitored over a period of >2 years using an automated, three-dimensional network of buried soil water content sensors tracking water flow and retention within the soil underneath the infiltrative surface. While trenches receiving PE expressed signs of biomat formation along the entire length of STU trenches, biomats in trenches receiving SE were significantly muted and did not extend further than 10 m from the inlet at the end of the study. The presence of a mature biomat helped to retain soil moisture above background levels and made the system more resilient towards drought events and desiccation stress but led, in one case, to effluent ponding within the trenches. A growth-limited non-linear model fit revealed that biomats in SE trenches are expected to remain considerably shorter and will not spread along the entire trench design length, even after 10 years of operation, which is contrary to prevalent design assumptions. Muted biomat growth, on the contrary, might lead to localized hydraulic and pollutant overloading and has been shown previously to negatively affect the ability to attenuate pollutants effectively within the soil profile before the effluent reaches the groundwater.

Suitability of fluorescent whitening compounds (FWCs) as indicators of human faecal contamination from septic tanks in rural catchments.

Rural river catchments are impacted by diffuse pollution sources from agricultural practices and on-site domestic wastewater treatment systems (DWWTS), mainly septic tanks. Methods that can distinguish between contamination sources will significantly increase water management efficiency as they will allow for the development and application of targeted remediation measures. Fluorescent whitening compounds (FWC), are used as optical brighteners in laundry detergents and enter the environment through the discharge of domestic wastewater effluents. Due to their human specific source and potential simple fluorometric measurement this represents a very attractive method to be used by state monitoring agencies. In this study the suitability of FWCs as chemical indicators for human faecal contamination has been investigated in rural Irish catchments. It was found that no quantitative measurements are possible for FWCs in natural waters when using simple fluorometric methods. Hence a simple presence/absence approach needs to be applied. The detectability of FWCs was quantified and found to decrease with higher organic matter content of the river water which has its own fluorescence. This enabled the establishment of equations to predict detection limits and assess the method's suitability for individual catchments based on organic matter concentrations. Furthermore a modified photodecay method is suggested that increases sensitivity of the technique by up to 59%. Applications at rural study sites found some removal of FWCs in percolation areas of DWWTSs but they were still detectable 40 cm below the infiltration depth. FWCs were also detected as distinguishable peaks in impacted streams where septic tank effluents have a high contribution to the river flow.

Long term heavy metal removal by a constructed wetland treating rainfall runoff from a motorway.

The accumulation of heavy metals (Cd, Cr, Cu, Ni, Pb, Zn) in the sediment and plants growing in a constructed wetland used to treat highway runoff in Ireland has been quantified after 6 and 9year periods of operation. The spatial distribution of the metals' deposition showed strong evidence of flow channelling through the wetland with a strong correlation between the spatial accumulation, particularly for Cr, Cu, Pb and Zn with most of these metals deposited towards the front of the wetland in the sediment. Highest accumulation in the wetland was for Zn, followed by Cu, Pb, Cr, Ni and Cd. The study also quantified that an almost negligible mass of metals had accumulated in the vegetation compared to the sediment. However, an apparent increase in metal accumulation with time may be linked to the cumulative annual production and deposition of organic matter, indicating the importance of the vegetation as an integral part of the treatment process. Based on the measured accumulation and projected runoff loads over the 9year period, the apparent removal efficiencies were 5% (Cd), 60% (Cu), 31% (Pb) and 86% (Zn). This equates to accumulation rates of 0.1 (Cd), 15.6 (Cu), 11.6 (Pb) and 88.3 (Zn) g per m2 highway drained per year.

Solar photocatalytic disinfection of E. coli and bacteriophages MS2, ΦX174 and PR772 using TiO2, ZnO and ruthenium based complexes in a continuous flow system.

The performance of photocatalytic treatment processes were assessed using different photocatalysts against E. coli and bacteriophages MS2, ΦX174 and PR772, in a recirculating continuous flow compound parabolic collector system under real sunlight conditions. Suspended TiO2 and ZnO nanoparticle powders and Tris(2,2'-bipyridyl)dichlororuthenium(II) hexahydrate in solution were tested separately, as well as in combination, using E. coli. For a 3-log reduction of E. coli in distilled water, inactivation rates in terms of cumulative dose were in the order Ru(bpy)3Cl2>(TiO2 & Ru(bpy)3Cl2)>(ZnO & Ru(bpy)3Cl2)>ZnO>TiO2>photolysis. Reactivation of E. coli was observed following all trials despite the detection limit being reached, although the reactivated colonies were observed to be under stress and much slower growing when compared to original colonies. Treatment with Ru(bpy)3Cl2 was also compared against standard photolysis of bacteriophages MS2, ΦX174 and PR772 with the order of photolytic inactivation for a 3-log reduction in terms of cumulative UV-A dose being ΦX174>PR772>MS2. However, MS2 was found to be the most susceptible bacteriophage to treatment with Ru(bpy)3Cl2, with complete removal of the phage observed within the first 15min of exposure. Ru(bpy)3Cl2 also significantly improved inactivation rates for PR772 and ΦX174.

Development of a geographic information system-based decision support toolset to assess the feasibility of on-site wastewater treatment and disposal options in low permeability subsoils.

Traditional on-site wastewater treatment systems have proven to be unsuitable in areas of low permeability subsoils, representing a risk to human health and the environment. With large areas being covered by low permeability tills, Ireland needs to consider alternative treatment and disposal options to be able to allow further development in these areas and to deal with polluting legacy sites. The paper describes the development and structure of a geographic information system (GIS)-based decision support toolset to evaluate possible alternative strategies for these sites. The programme takes as its initial input the location of an existing house located in an area of low permeability subsoils. Through a series of interconnected GIS geoprocesses the model outputs appropriate solutions for a site, ranking them in terms of environmental sustainability and cost. However, the final decisions are still dependent on on-site constraints so that each solution is accompanied by an alert message that provides additional information for the user to refine the output list according to the available local site-specific information.

Assessment of the impact of traditional septic tank soakaway systems on water quality in Ireland.

One of the key threats to groundwater and surface water quality in Ireland is the impact of poorly designed, constructed or maintained on-site wastewater treatment systems. An extensive study was carried out to quantify the impact of existing sites on water quality. Six existing sites, consisting of a traditional septic tank and soakaway system, located in various ranges of subsoil permeabilities were identified and monitored to determine how well they function under varying subsoil and weather conditions. The preliminary results of the chemical and microbiological pollutant attenuation in the subsoil of the systems have been assessed and treatment performance evaluated, as well as impact on local surface water and groundwater quality. The source of any faecal contamination detected in groundwater, nearby surface water and effluent samples was confirmed by microbial source tracking. From this, it can be seen that the transport and treatment of percolate vary greatly depending on the permeability and composition of the subsoil.

Groundwater source contamination mechanisms: physicochemical profile clustering, risk factor analysis and multivariate modelling.

An integrated domestic well sampling and "susceptibility assessment" programme was undertaken in the Republic of Ireland from April 2008 to November 2010. Overall, 211 domestic wells were sampled, assessed and collated with local climate data. Based upon groundwater physicochemical profile, three clusters have been identified and characterised by source type (borehole or hand-dug well) and local geological setting. Statistical analysis indicates that cluster membership is significantly associated with the prevalence of bacteria (p=0.001), with mean Escherichia coli presence within clusters ranging from 15.4% (Cluster-1) to 47.6% (Cluster-3). Bivariate risk factor analysis shows that on-site septic tank presence was the only risk factor significantly associated (p<0.05) with bacterial presence within all clusters. Point agriculture adjacency was significantly associated with both borehole-related clusters. Well design criteria were associated with hand-dug wells and boreholes in areas characterised by high permeability subsoils, while local geological setting was significant for hand-dug wells and boreholes in areas dominated by low/moderate permeability subsoils. Multivariate susceptibility models were developed for all clusters, with predictive accuracies of 84% (Cluster-1) to 91% (Cluster-2) achieved. Septic tank setback was a common variable within all multivariate models, while agricultural sources were also significant, albeit to a lesser degree. Furthermore, well liner clearance was a significant factor in all models, indicating that direct surface ingress is a significant well contamination mechanism. Identification and elucidation of cluster-specific contamination mechanisms may be used to develop improved overall risk management and wellhead protection strategies, while also informing future remediation and maintenance efforts.

Unregulated private wells in the Republic of Ireland: consumer awareness, source susceptibility and protective actions.

While the safety of public drinking water supplies in the Republic of Ireland is governed and monitored at both local and national levels, there are currently no legislative tools in place relating to private supplies. It is therefore paramount that private well owners (and users) be aware of source specifications and potential contamination risks, to ensure adequate water quality. The objective of this study was to investigate the level of awareness among private well owners in the Republic of Ireland, relating to source characterisation and groundwater contamination issues. This was undertaken through interviews with 245 private well owners. Statistical analysis indicates that respondents' source type significantly influences owner awareness, particularly regarding well construction and design parameters. Water treatment, source maintenance and regular water quality testing are considered the three primary "protective actions" (or "stewardship activities") to consumption of contaminated groundwater and were reported as being absent in 64%, 72% and 40% of cases, respectively. Results indicate that the level of awareness exhibited by well users did not significantly affect the likelihood of their source being contaminated (source susceptibility); increased awareness on behalf of well users was associated with increased levels of protective action, particularly among borehole owners. Hence, lower levels of awareness may result in increased contraction of waterborne illnesses where contaminants have entered the well. Accordingly, focused educational strategies to increase awareness among private groundwater users are advocated in the short-term; the development and introdiction of formal legislation is recommended in the long-term, including an integrated programme of well inspections and risk assessments.

Investigation of water consumption patterns among Irish adults for waterborne quantitative microbial risk assessment (QMRA).

Microbial and chemical contamination of drinking water supplies can cause human health problems. Microbial pathogens are of primary concern and quantitative microbial risk assessment (QMRA) is employed to assess and manage the risks they pose. Estimates of drinking water consumption, or distributions, are required to assess levels of waterborne pathogen exposure. To establish distributions for the Irish population, water consumption data were collected from 549 rural survey respondents. A further 110 participants completed a five-day water consumption diary. Average daily consumption of tap-water among the primarily rural-dwelling questionnaire respondents was 940 ml day(-1) (SD 670 ml day(-1)) and 1,186 ml day(-1) (SD 701 ml day(-1)) among the principally urban-dwelling diary respondents. Both mean figures are significantly less than the 2,000 ml day(-1) default figure currently used for QRMA; therefore its use may lead to overestimation of the waterborne health burden. As the observed daily consumption difference between rural and urban residents is statistically significant, use of separate consumption distributions for QMRA is advocated. Although males reported higher daily tap-water consumption rates than females, these differences were insignificant, so separate consumption distributions are not considered necessary. A log-normal distribution provides the most adequate fit for daily tap-water intake (ml day(-1)) within both datasets.

The inactivation of phages MS2, ΦX174 and PR772 using UV and solar photocatalysis.

The photolytic and photocatalytic disinfection of three bacteriophages (MS2, ΦX174 and PR772) under both artificial UV irradiation and natural sunlight was studied. A large variation was seen in the relative responses of phages to the two light sources, while solar photocatalysis showed promising disinfection capabilities for all three phages. Under artificial UV, the resistance of phages to both photolytic and artificial treatment was found to decrease in the following order: PR772>ΦX174>MS2. Indeed, 3-log inactivation of PR772 was not achieved after 25 h of illumination in either the absence or presence of catalyst. Under solar treatment, PR772 was inactivated far more readily, 3-log inactivation being achieved within an hour in the presence of catalyst in two trials. It is thought that the variation in solar intensity during the trials had a major effect on disinfection rates, as kinetics for phages varied considerably under different weather conditions.

On-site wastewater treatment using subsurface flow constructed wetlands in Ireland.

The results from an Irish EPA-funded project on the effectiveness of using constructed wetlands for treating wastewater from single households is presented, which has contributed to the design guidelines included in the new EPA Code of Practice. Three subsurface flow gravel-filled wetlands were constructed on separate sites--one to provide secondary treatment and the other two to provide tertiary treatment stages for the domestic effluent. A comprehensive analysis over three years was then conducted to provide a robust characterization of the internal dynamics of the systems, particularly with respect to N and P removal as well as evaluating the temporal water balance across the different seasons. The removal of Total N was only 29% and 30% in the secondary and tertiary treatment wetlands, respectively; particularly disappointing for the tertiary treatment process, which was receiving nitrified effluent. Studies on the (15)N stable isotope confirmed that 35% of the ammonium from the septic tank was passing straight through the process without taking part in any biogeochemical processes. However, influent N in the wetlands was shown to be biologically assimilated into organic nitrogen and then released again as soluble ammonium--so-called nitrogen "spiraling." Removal of Total P in the wetlands averaged from 28% to 45% with higher P removals measured during summer periods, although the effluent concentrations were still found to be high (> 5 mg/l on average). The phosphorus in the plant material was also analysed revealing that the annual above-ground stem matter only accounted for 1.3% to 8.4% of the annual total P-load in the wetlands. Finally, the water balance analyses showed that the mean flow discharging from both the secondary and tertiary treatment wetlands was slightly greater than the mean flow to the reed bed over the trial period, with rainfall acting to increase flows by 13% and 5%, respectively, on average in winter while just about balancing evapotranspiration in the summer.

A principal components analysis of the factors effecting personal exposure to air pollution in urban commuters in Dublin, Ireland.

Principal component analysis was used to examine air pollution personal exposure data of four urban commuter transport modes for their interrelationships between pollutants and relationships with traffic and meteorological data. Air quality samples of PM2.5 and VOCs were recorded during peak traffic congestion for the car, bus, cyclist and pedestrian between January 2005 and June 2006 on a busy route in Dublin, Ireland. In total, 200 personal exposure samples were recorded each comprising 17 variables describing the personal exposure concentrations, meteorological conditions and traffic conditions. The data reduction technique, principal component analysis (PCA), was used to create weighted linear combinations of the data and these were subsequently examined for interrelationships between the many variables recorded. The results of the PCA found that personal exposure concentrations in non-motorised forms of transport were influenced to a higher degree by wind speed, whereas personal exposure concentrations in motorised forms of transport were influenced to a higher degree by traffic congestion. The findings of the investigation show that the most effective mechanisms of personal exposure reduction differ between motorised and non-motorised modes of commuter transport.

Optimal cycling and walking speed for minimum absorption of traffic emissions in the lungs.

This study investigated whether, over a number of fixed distances and under a number of different exposure concentrations, the cyclist will adsorb less benzene by cycling/walking slowly with a relatively low breathing rate or by cycling/walking as fast as reasonably possible with a relatively high breathing rate. Breathing rates were measured in the laboratory for various cycling/walking speeds over set distances. These breathing rates could then be entered into a numerical model of the human respiratory tract together with the journey times and pollutant concentrations to assess the total absorption of pollutants in the lungs. Results show that cycling and walking at a relatively fast speed and therefore breathing at a higher rate over a shorter duration of exposure results in lower total absorption of benzene than cycling/walking the same distance at a slower speed. The magnitude of this reduction (was more notable at lower concentrations than at high concentrations in the alveolar region of the lungs and was more notable for the pedestrian than cyclist. The cycling at a faster pace resulted in a 17% reduction in total absorption, while walking at a faster pace resulted in a 26% reduction compared to travelling at a slower pace in both cases.