ELI: an IoT-aware big data pipeline with data curation and data quality.

The complexity of analysing data from IoT sensors requires the use of Big Data technologies, posing challenges such as data curation and data quality assessment. Not facing both aspects potentially can lead to erroneous decision-making (i.e., processing incorrectly treated data, introducing errors into processes, causing damage or increasing costs). This article presents ELI, an IoT-based Big Data pipeline for developing a data curation process and assessing the usability of data collected by IoT sensors in both offline and online scenarios. We propose the use of a pipeline that integrates data transformation and integration tools and a customisable decision model based on the Decision Model and Notation (DMN) to evaluate the data quality. Our study emphasises the importance of data curation and quality to integrate IoT information by identifying and discarding low-quality data that obstruct meaningful insights and introduce errors in decision making. We evaluated our approach in a smart farm scenario using agricultural humidity and temperature data collected from various types of sensors. Moreover, the proposed model exhibited consistent results in offline and online (stream data) scenarios. In addition, a performance evaluation has been developed, demonstrating its effectiveness. In summary, this article contributes to the development of a usable and effective IoT-based Big Data pipeline with data curation capabilities and assessing data usability in both online and offline scenarios. Additionally, it introduces customisable decision models for measuring data quality across multiple dimensions.

The innate immunity role of cathepsin-D is linked to Trp-491 and Trp-492 residues of listeriolysin O.

Listeriolysin O (LLO) is a thiol-activated cytolysin secreted by Listeria monocytogenes. LLO and phosphatidylinositol phospholipase C are two essential virulence factors, which this bacterium needs to escape from the phagosomal compartment to the cytoplasm. Cathepsin-D specifically cleaves LLO, between the Trp-491 (tryptophan amino acid in three letter nomenclature) and Trp-492 residues of the conserved undecapeptide sequence, ECTGLAWEWWR, in the domain 4 of LLO (D4). Moreover, these residues also correspond to the phagosomal-binding epitope. Cathepsin-D had no effect on phosphatidylinositol phospholipase C. We have observed that cathepsin-D cleaved the related cholesterol-dependent cytolysin pneumolysin at the same undecapeptide sequence between Trp-435 and Trp-436 residues. These studies also revealed an additional cathepsin-D cleavage site in the pneumolysin D4 domain localized in the 361-GDLLLD-366 sequence. These differences might confer a pathogenic advantage to listeriolysin O, increasing its resistance to phagosomal cathepsin-D action by reducing the number of cleavages sites in the D4 domain. Using ΔLLO/W491A and ΔLLO/W492A bacterial mutants, we reveal that the Trp-491 residue has an important role linked to cathepsin-D in Listeria innate immunity.

Characterization of a Listeria monocytogenes protein interfering with Rab5a.

Listeria monocytogenes (LM) phagocytic strategy implies recruitment and inhibition of Rab5a. Here, we identify a Listeria protein that binds to Rab5a and is responsible for Rab5a recruitment to phagosomes and impairment of the GDP/GTP exchange activity. This protein was identified as a glyceraldehyde-3-phosphate dehydrogenase (GAPDH) from Listeria (p40 protein, Lmo 2459). The p40 protein was found within the phagosomal membrane. Analysis of the sequence of LM p40 protein revealed two enzymatic domains: the nicotinamide adenine dinucleotide (NAD)-binding domain at the N-terminal and the C-terminal glycolytic domain. The putative ADP-ribosylating ability of this Listeria protein located in the N-terminal domain was examined and showed some similarities to the activity and Rab5a inhibition exerted by Pseudomonas aeruginosa ExoS onto endosome-endosome fusion. Listeria p40 caused Rab5a-specific ADP ribosylation and blocked Rab5a-exchange factor (Vps9) and GDI interaction and function, explaining the inhibition observed in Rab5a-mediated phagosome-endosome fusion. Meanwhile, ExoS impaired Rab5-early endosomal antigen 1 (EEA1) interaction and showed a wider Rab specificity. Listeria GAPDH might be the first intracellular gram-positive enzyme targeted to Rab proteins with ADP-ribosylating ability and a putative novel virulence factor.