Biofilm formation promoted biodegradation of polyethylene in Gordonia polyisoprenivorans B251 isolated from bacterial enrichment acclimated by hexadecane for two years.

Polyethylene (PE) mulch films have been widely used in agriculture and led to a significant pollution in cultivated soils. It is desirable to develop the sustainable method for the degradation of PE. As an environment friendly approach, microbial or enzymatic degradation of PE could meet this demanding. Thus, more microbial strains are required for illustrating biodegrading pathway and developing efficient biological method. In this study, Gordonia polyisoprenivorans B251 capable of degrading PE was isolated from bacterial enrichment with hexadecane as a sole carbon source for two years, in which genus Gordonia had dominated. As revealed by microbial growth curve, the strain B251 had the highest growth rate than other tested strains in the mediums either with hexadecane or PE particles as sole carbon source. The formation of biofilms in both enriched culture and G. polyisoprenivorans B251 pure culture attached to PE film was observed. The capability for PE degradation of individual strain was screened by 30-day incubation with PE film and confirmed by the presence of hydroxyl, carbonyl, carbon-carbon double bond and ether groups in FT-IR analysis and cracks on the surface of PE film observed by scanning electron microscopy (SEM). Therefore, Gordonia polyisoprenivorans, reported as their degradation of environmental contaminants in previous study, were also identified in current study as a candidate for polyethylene biodegradation.

Mitigation of greenhouse gas emissions and improved yield by plastic mulching in rice production.

Soil mulching technologies are effective practices which alleviate non-point source pollution and carbon emissions, while ensuring grain production security and increasing water productivity. However, the lack of comprehensive understanding of the impacts of mulching technologies on rice fields has hindered progress in global implementation due to the varying environments and application conditions under which they are implemented. This study conducted a meta-analysis based on 2412 groups of field experiment data from 313 studies to evaluate the effects of soil mulching methods on rice production, greenhouse gas (GHG) emissions and water use efficiency. The results show that plastic mulching, straw mulching and no mulching (PM, SM and NM) have reduced CH4 emissions (68.8 %, 61.4 % and 57.2 %), increased N2O emissions (84.8 %, 89.1 % and 96.6 %), reduced global warming potentials (50.7 %, 47.5 % and 46.8 %) and improved water use efficiency (50.2 %, 40.9 % and 34.0 %) compared with continuous flooding irrigation. However, PM increased rice yield (1.6 %), while SM and NM decreased yield (4.3 % and 9.2 %). Furthermore, analysis using random forest models revealed that rice yield, GHG emissions and WUE response to soil mulching were related to climate, soil properties, fertilizer and rice varieties. Our findings can guide the implementation of plastic mulching technology in priority areas, contribute to agricultural carbon neutrality and support the development of practical guidelines for farmers.

Role of key-stone microbial taxa in algae amended soil for mediating nitrogen transformation.

Although the plant-growth promotion by algae have been studied comprehensively, their impacts on indigenous soil microbiome remain largely unexplored. Herein we conducted a greenhouse experiment to investigate the changes in soil properties and corresponding microbial communities (bacterial, fungal and protists) after 2-year application of algae and their dynamic variation within 60 days immediately after algae addition. In comparison with Control treatment, the impact of algae on soil properties and microbial communities was huge, especially the content of nitrate was decreased however soluble organic nitrogen (SON) was increased. The increased copies of nifH gene suggested the improved potential of nitrogen fixation in algae treated soil. By constructing multitrophic ecological network, soil microorganisms were divided into several modules, and two key-stone microbial taxa (module 1 and 2) showed strong associations with the content of nitrate and SON. With addition of algae, the abundance of most microbial taxa was decreased and increased in module 1 and module 2, respectively. Particularly, module 1 and module 2 were proved to be taxonomically and functionally comprised of different microbes. Moreover, random forest analysis and structural equation model indicated that the key-stone microbial taxa were more important factors affecting the content of nitrate and SON than algae, bacterial, fungal and protistan communities and the influence of algae on soil nitrogen cycling mostly depended on their indirect effects via module 1 and 2.

Root Morphogenesis of Arabidopsis thaliana Tuned by Plant Growth-Promoting Streptomyces Isolated From Root-Associated Soil of Artemisia annua.

In this study, the capacity to tune root morphogenesis by a plant growth-promoting rhizobacterium, Streptomyces lincolnensis L4, was investigated from various aspects including microbial physiology, root development, and root endophytic microbial community. Strain L4 was isolated from the root-associated soil of 7-year plantation of Artemisia annua. Aiming at revealing the promotion mechanism of Streptomyces on root growth and development, this study first evaluated the growth promotion characters of S. lincolnensis L4, followed by investigation in the effect of L4 inoculation on root morphology, endophytic microbiota of root system, and expression of genes involved in root development in Arabidopsis thaliana. Streptomyces lincolnensis L4 is able to hydrolyze organic and inorganic phosphorus, fix nitrogen, and produce IAA, ACC deaminase, and siderophore, which shaped specific structure of endophytic bacterial community with dominant Streptomyces in roots and promoted the development of roots. From the observation of root development characteristics, root length, root diameter, and the number of root hairs were increased by inoculation of strain L4, which were verified by the differential expression of root development-related genes in A. thaliana. Genomic traits of S. lincolnensis L4 which further revealed its capacity for plant growth promotion in which genes involved in phosphorus solubilization, ACC deamination, iron transportation, and IAA production were identified. This root growth-promoting strain has the potential to develop green method for regulating plant development. These findings provide us ecological knowledge of microenvironment around root system and a new approach for regulating root development.

Distinct Drivers of Core and Accessory Components of Soil Microbial Community Functional Diversity under Environmental Changes.

It is a central ecological goal to explore the effects of global change factors on soil microbial communities. The vast functional gene repertoire of soil microbial communities is composed of both core and accessory genes, which may be governed by distinct drivers. This intuitive hypothesis, however, remains largely unexplored. We conducted a 5-year nitrogen and water addition experiment in the Eurasian steppe and quantified microbial gene diversity via shotgun metagenomics. Nitrogen addition led to an 11-fold increase in the abundance (based on quantitative PCR [qPCR]) of ammonia-oxidizing bacteria, which have mainly core community genes and few accessory community genes. Thus, nitrogen addition substantially increased the relative abundance of many core genes at the whole-community level. Water addition stimulated both plant diversity and microbial respiration; however, increased carbon/energy resources from plants did not counteract increased respiration, so soil carbon/energy resources became more limited. Thus, water addition selected for microorganisms with genes responsible for degrading recalcitrant soil organic matter. Accordingly, many other microorganisms without these genes (but likely with other accessory community genes due to relatively stable average microbial genome size) were selected against, leading to the decrease in the diversity of accessory community genes. In summary, nitrogen addition primarily affected core community genes through nitrogen-cycling processes, and water addition primarily regulated accessory community genes through carbon-cycling processes. Although both gene components may significantly respond as the intensity of nitrogen/water addition increases, our results demonstrated how these common global change factors distinctly impact each component.IMPORTANCE Our results demonstrated increased ecosystem nitrogen and water content as the primary drivers of the core and accessory components of soil microbial community functional diversity, respectively. Our findings suggested that more attention should be paid to certain components of community functional diversity under specific global change conditions. Our findings also indicated that microbial communities have adapted to nitrogen addition by strengthening the function of ammonia oxidization to deplete the excess nitrogen, thus maintaining ecosystem homeostasis. Because community gene richness is primarily determined by the presence/absence of accessory community genes, our findings further implied that strategies such as maintaining the amount of soil organic matter could be adopted to effectively improve the functional gene diversity of soil microbial communities subject to global change factors.

Ecosystem respiration and its components in a rainfed spring maize cropland in the Loess Plateau, China.

We estimated ecosystem respiration (Re) and its components in a rainfed spring maize field in the Loess Plateau, China, during the growing seasons of 2012, 2013, and 2014 using measurements of eddy covariance and soil respiration (Rs). The multi-factor equation, which included photosynthetic active radiation, 5-cm soil temperature, 10-cm soil water content, and green leaf area index (GLAI), had goodness-of-fit values of between 0.81 and 0.94 for Re, autotrophic respiration (Ra), and above-ground autotrophic respiration (Raa), and goodness-of-fit values of between 0.50 and 0.67 for Rs, below-ground autotrophic respiration (Rab), and heterotrophic respiration (Rh). The highly significant linear correlations between gross primary production (GPP) and Re and its components indicate that GPP had a strong influence on Re and its components. The growing season Re was dominated by Ra (64-71%), which in turn was dominated by Raa (63-73%). Although Rs was mainly made up of Rh (56-61%), Rs resembled Rab more closely than Rh. The relationships between GLAI and Ra/Re and between GLAI and Rab/Rs were described by logarithmic equations with goodness-of-fit values of between 0.88 and 0.89 and between 0.77 and 0.84, respectively, indicating that GLAI controlled Ra/Re and Rab/Rs.

Carbon budget of a rainfed spring maize cropland with straw returning on the Loess Plateau, China.

Assessing the carbon budget of rainfed agricultural ecosystems is a vital component in the process of estimating the global carbon balance. We used eddy covariance techniques combined with soil respiration measurements to estimate the carbon budget of a rainfed spring maize field where straw returning was practiced, on the Loess Plateau, China, during 2012-2014. Carbon fluxes and their components (except heterotrophic respiration, Rh) exhibited single-peak seasonal patterns, and linear relationships were found between daily gross primary productivity (GPP) and net ecosystem exchange (NEE), and between daily GPP and ecosystem respiration (Re), with goodness of fit value of 0.96 and 0.85, respectively. The green leaf area index was the most important factor controlling seasonal variations in daily NEE, Re, and GPP during the growing season, followed by photosynthetically active radiation and air temperature (Ta). Daily Re was mainly controlled by air temperature during the non-growing season, when Re accounted for only ~17% of the annual Re due to winter temperatures. Growing season plant respiration (Rp) was the most important source of carbon emissions from the maize field, with aboveground plant respiration being the major part of Rp. Rh accounted for ~60% of total soil respiration. Only ~60% of the annual GPP was lost as Re, resulting in an average annual net CO2 uptake of 509gCm-2. Taking into account carbon exported (483gCm-2) and carbon imported (10gCm-2), the average annual net biome productivity was 37gCm-2, indicating that the spring maize field with straw returning on the Loess Plateau was a weak carbon sink.

Warmer and Wetter Soil Stimulates Assimilation More than Respiration in Rainfed Agricultural Ecosystem on the China Loess Plateau: The Role of Partial Plastic Film Mulching Tillage.

Effects of agricultural practices on ecosystem carbon storage have acquired widespread concern due to its alleviation of rising atmospheric CO2 concentrations. Recently, combining of furrow-ridge with plastic film mulching in spring maize ecosystem was widely applied to boost crop water productivity in the semiarid regions of China. However, there is still limited information about the potentials for increased ecosystem carbon storage of this tillage method. The objective of this study was to quantify and contrast net carbon dioxide exchange, biomass accumulation and carbon budgets of maize (Zea maize L.) fields under the traditional non-mulching with flat tillage (CK) and partial plastic film mulching with furrow-ridge tillage (MFR) on the China Loess Plateau. Half-hourly net ecosystem CO2 exchange (NEE) of both treatments were synchronously measured with two eddy covariance systems during the growing seasons of 2011 through 2013. At same time green leaf area index (GLAI) and biomass were also measured biweekly. Compared with CK, the warmer and wetter (+1.3°C and +4.3%) top soil at MFR accelerated the rates of biomass accumulation, promoted greater green leaf area and thus shortened the growing seasons by an average value of 10.4 days for three years. MFR stimulated assimilation more than respiration during whole growing season, resulting in a higher carbon sequestration in terms of NEE of -79 gC/m2 than CK. However, after considering carbon in harvested grain (or aboveground biomass), there is a slight higher carbon sink (or a stronger carbon source) in MFR due to its greater difference of aboveground biomass than that of grain between both treatments. These results demonstrate that partial plastic film mulched furrow-ridge tillage with aboveground biomass exclusive of grain returned to the soil is an effective way to enhance simultaneously carbon sequestration and grain yield of maize in the semiarid regions.

[Influence of measurement position on calculating pear tree stem sap flow].

By the method of heat pulse, this paper studied the influence of different measurement positions on calculating the stem sap flow velocity and quantity of pear trees. The results showed that at definite depths, the directional variation of the volume fraction of water and wood was lower than the seasonal change of wood physical parameters. The directional and seasonal variation of the volumetric water and wood was 0.01 - 0.03 and 0 - 0.02, and 0.02 - 0.09 and 0.02 -0.08, respectively. The sap flow velocity at definite depth, which was calculated by different depths wood physical parameters measured at the same time, had no significant difference, but that calculated by the same depth wood parameters measured at different time was significantly different. The sap flow quantity measured at the inner two points and four points was underestimated 1.5 and 4.9 times of that measured at the outer corresponding measurement positions, relative to the estimation obtained from a multi-point measurement. The sap flow quantity measured by four-point at the position of 0 - 0.6 from the cambium could represent the water consumption of whole tree.

[Maize growth and phosphorous- and zinc uptake under different phosphorous supply levels].

By the method of solution culture, this paper studied the P and Zn uptake of maize at its growth stages under different P supply levels. The results showed that maize growth reached its maximum at the supply level of 100 micromol P.L(-1), while the root/shoot ratio was the highest at 0.1 micromol.L(-1) P supply. Increase of P concentration in culture solution promoted the uptake of P, but decreased its utilization rate. The Zn content in root increased with increasing P supply, while that in shoot varied little, which meant that the Zn transportation rate from root to shoot had little change with increasing P concentration. There was a positive correlation between the concentrations of Zn and P in maize seedling roots.