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1.
Zh Nevrol Psikhiatr Im S S Korsakova ; 124(5. Vyp. 2): 72-78, 2024.
Artigo em Russo | MEDLINE | ID: mdl-38934669

RESUMO

OBJECTIVE: To study the relationship between brain-derived neurotrophic factor (BDNF) and the severity of nocturnal hypoxemia in patients in the acute and early recovery period of ischemic stroke (IS). MATERIAL AND METHODS: We enrolled 44 patients (27 men, 17 women), aged 18-85 years, in the acute phase of IS. At 3-month follow-up, 35 people were examined (21 men and 14 women). In the acute period, in addition to routine diagnostic procedures, respiratory monitoring was carried out, and the serum level of BDNF was measured by enzyme-linked immunosorbent assay. BDNF level was also evaluated at 3-month follow-up visit. Neurological status and its dynamics in the acute period of stroke were assessed as part of the clinical routine according to the National Institutes of Health Stroke Scale (NIHSS) at admission and discharge. RESULTS: We found a direct correlation between the duration of hypoxemia with SpO2 less than 90% (r=0.327, p=0.035) and less than 85% (r=0.461, p=0.003) and BDNF level in the acute phase of IS. BDNF level in the acute period of IS was negatively correlated with the minimum saturation value (r=-0.328, p=0.034). There was a direct relationship between BDNF level in the early recovery period and the duration of hypoxemia with SpO2 less than 85% (r=-0.389, p=0.028). A regression model showed that BDNF level was associated with the minimum SpO2 level. No significant associations were found with indicators of sleep-disordered breathing severity, such as the apnea-hypopnea index and the oxygen desaturation index. CONCLUSION: The severity of nocturnal hypoxemia is associated with the increase in BDNF levels both in the acute and recovery periods of IS, regardless of the presence of concomitant breathing disorders during sleep.


Assuntos
Fator Neurotrófico Derivado do Encéfalo , Hipóxia , AVC Isquêmico , Humanos , Masculino , Fator Neurotrófico Derivado do Encéfalo/sangue , Feminino , Pessoa de Meia-Idade , Idoso , Adulto , Hipóxia/sangue , Hipóxia/complicações , Idoso de 80 Anos ou mais , Adolescente , AVC Isquêmico/sangue , AVC Isquêmico/complicações , Adulto Jovem
2.
Ter Arkh ; 95(5): 380-385, 2023 Jul 16.
Artigo em Russo | MEDLINE | ID: mdl-38158989

RESUMO

BACKGROUND: In Russia, as well as throughout the world, the use of glucocorticoids (GC) in the treatment of rheumatoid arthritis (RA) is widespread, often going beyond the recommendations for both duration and dose regimen, which makes it relevant to study the long-term consequences of such a "wrong" (EULAR, 2022) use of GC in RA therapy. MATERIALS AND METHODS: Of 1143 patients with active RA (ACR/EULAR 2010), two groups were formed: A (n=782) RA patients with more than 6 months of experience with systemic GC; group B (n=245) - no experience of taking GC. The cumulative disease index (CIRS) was used to assess the comorbidity profile. RESULTS: Patients in group A were older (p<0.0001), with a longer duration of RA (p=0.0004) and more often with IV radiological stage (p=0.02). With comparable (DAS28) RA activity, the D2T variant of RA was more often detected in them (p=0.036). RA therapy in group A was characterized by a large number of used disease-modifying anti-rheumatic drugs (p=0.0003), more frequent development of methotrexate-induced hepatitis (p=0.03). In group A, the time interval between the onset of RA and the initiation of biological therapy was longer (p=0.0001) and directly correlated with the duration of GC therapy (Rs=0.38) with a comparable qualitative structure of the used b/tsDMARDs. In the same group, tuberculosis, hypertension, chronic kidney disease, cataract and osteoporosis (p<0.05) and its complications were diagnosed significantly more often with a comparable frequency of cardiovascular disease, diabetes, and gastrointestinal lesions. In group A, a higher CIRS multimorbidity index was detected, and the CIRS severity index was lower than in group B (p<0.05). CONCLUSION: Long-term use of GC did not lead to a decrease in disease activity, inhibition of radiographic progression, delayed the timely administration of b/tsDMARDS and was accompanied by an increase in the multimorbid load.


Assuntos
Antirreumáticos , Artrite Reumatoide , Humanos , Glucocorticoides/uso terapêutico , Progressão da Doença , Artrite Reumatoide/tratamento farmacológico , Artrite Reumatoide/epidemiologia , Artrite Reumatoide/diagnóstico , Antirreumáticos/uso terapêutico , Metotrexato/uso terapêutico
3.
IBRO Neurosci Rep ; 14: 273-283, 2023 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-36926591

RESUMO

Alzheimer's disease (AD) is the most common cause of dementia. An early feature of the AD pathology is the dysregulation of intracellular Ca2+ signaling in neurons. In particular, increased Ca2+ release from endoplasmic reticulum-located Ca2+ channels, including inositol-1,4,5-trisphosphate type 1 receptors (IP3R1) and ryanodine receptors type 2 (RyR2), have been extensively reported. Known for its anti-apoptotic properties, Bcl-2 also has the ability to bind to and inhibit the Ca2+-flux properties of IP3Rs and RyRs. In this study, the hypothesis that the expression of Bcl-2 proteins can normalize dysregulated Ca2+ signaling in a mouse model of AD (5xFAD) and thereby prevent or slow the progression of AD was examined. Therefore, stereotactic injections of adeno-associated viral vectors expressing Bcl-2 proteins were performed in the CA1 region of the 5xFAD mouse hippocampus. In order to assess the importance of the association with IP3R1, the Bcl-2K17D mutant was also included in these experiments. This K17D mutation has been previously shown to decrease the association of Bcl-2 with IP3R1, thereby impairing its ability to inhibit IP3R1 while not affecting Bcl-2's ability to inhibit RyRs. Here, we demonstrate that Bcl-2 protein expression leads to synaptoprotective and amyloid-protective effects in the 5xFAD animal model. Several of these neuroprotective features are also observed by Bcl-2K17D protein expression, suggesting that these effects are not associated with Bcl-2-mediated inhibition of IP3R1. Potential mechanisms for this Bcl-2 synaptoprotective action may be related to its ability to inhibit RyR2 activity as Bcl-2 and Bcl-2K17D are equally potent in inhibiting RyR2-mediated Ca2+ fluxes. This work indicates that Bcl-2-based strategies hold neuroprotective potential in AD models, though the underlying mechanisms requires further investigation.

4.
Ter Arkh ; 94(5): 661-666, 2022 Jun 17.
Artigo em Russo | MEDLINE | ID: mdl-36286966

RESUMO

AIM: To compare the features of the course of the disease and the therapy in rheumatoid arthritis (RA) patients who meet the criteria of difficult-to-treat RA (D2T). MATERIALS AND METHODS: The study included 505 RA patients (ACR/EULAR 2010). Rheumatologist experts discussed all patients, since the treatment of RA ware perceived as problematic and/or insufficient. All patients had at least one of the following signs: the activity of the disease is no lower than moderate; the inability to reduce the dose of glucocorticoids to low; rapid radiological progression; RA symptoms causing a decrease in quality of life. The D2T group included 35 patients with true inefficiency or intolerance of two or more of bDMARDs/tsDMARDs of different mechanism of action. The control group (K) included patients with RA who already had experience of taking at least one class of bDMARDs/tsDMARDs (n=291). RESULTS: On average, every 15 patients (7%) with RA met the EULAR criteria for D2T. The median age of patients in the D2T group was 45 years, which is less than in K (Me 54 [43; 62] years; p=0.046). The duration of RA in both groups was comparable. The severity of articular destruction in D2T was higher than in K (stage IV in 40% and 23%, respectively). Positivity for the RF and ACPA in D2T was less common than in K (60% and 85.9%; 60% and 76.6%, respectively). The presence of systemic manifestations of RA was more typical for K than for D2T (28.6% and 63%, p=0.0001). In the group of D2T patients, the number of previously taken DMARDs was higher than in K (p=0.002). Methotrexate was more often prescribed as the first DMARDs in both groups (in 62.9 and 65.7%, respectively). Initiation of bDMARDs/tsDMARDs therapy in D2T was more often performed by TNF-a inhibitors (OR 2.8; p=0.003) and co-stimulation blocker abatacept (OR 4.6; p=0.004), and in control by B-cell inhibitor rituximab (OR 6.9; p0.0001). CONCLUSION: The results of this study suggest that in Russia, as well as abroad, the principle of RA treatment treat to target has not yet become widespread, and the development of adequate therapy takes too much time.


Assuntos
Antirreumáticos , Artrite Reumatoide , Humanos , Pessoa de Meia-Idade , Metotrexato/uso terapêutico , Abatacepte/uso terapêutico , Rituximab/uso terapêutico , Qualidade de Vida , Artrite Reumatoide/diagnóstico , Artrite Reumatoide/tratamento farmacológico , Antirreumáticos/uso terapêutico
5.
Zh Nevrol Psikhiatr Im S S Korsakova ; 122(5. Vyp. 2): 48-51, 2022.
Artigo em Russo | MEDLINE | ID: mdl-35759566

RESUMO

The article describes pathogenetic models for insomnia: «3P¼ model of insomnia, hyperarousal model, and sleep reactivity to stress model. Anxiety and stress are addressed as predisposing, precipitating and perpetuating factors of insomnia. The problem of high comorbidity of insomnia and mental disorders is highlighted. Modern non-pharmacological and pharmacological approaches to treatment of insomnia are described: psychotherapy, other non-pharmacological methods as well as the use of medications. These methods can be used both independently and in combination. In particular, combination of psychotherapy and nonprescription medicines aimed at normalizing emotional state is possible.


Assuntos
Distúrbios do Início e da Manutenção do Sono , Ansiedade , Transtornos de Ansiedade , Emoções , Humanos , Sono , Distúrbios do Início e da Manutenção do Sono/tratamento farmacológico
6.
Ter Arkh ; 93(5): 635-639, 2021 May 15.
Artigo em Russo | MEDLINE | ID: mdl-36286722

RESUMO

The significant humoral effect of the renin-angiotensin-aldosterone system on the regulation of the cardiovascular system and blood pressure has long been widely known. However, the identification and interpretation of new components of renin-angiotensin-aldosterone system in recent years can significantly expand the range of its potential effects on the body. The anti-inflammatory effect of drugs that block angiotensin II and its receptors, including in rheumatic diseases, can become practically significant for General therapists by their effect on reducing the concentration of inflammatory mediators and angiogenesis processes. The organoprotective and anti-inflammatory potentials of drugs that reduce the production of at demonstrated in vitro and in vivo experiments allow us to consider them as first-line angiotropic agents in patients with rheumatoid arthritis, especially in the presence of pathology of the cardiovascular system and kidneys.


Assuntos
Artropatias , Renina , Humanos , Renina/metabolismo , Renina/farmacologia , Angiotensina II/farmacologia , Sistema Renina-Angiotensina , Anti-Inflamatórios/farmacologia , Aldosterona
7.
J Hazard Mater ; 400: 123268, 2020 Dec 05.
Artigo em Inglês | MEDLINE | ID: mdl-32947696

RESUMO

The paper describes a new method of waste polyethylene terephthalate (PET) recycling based on gas-phase treatment of the material in nitrating atmosphere. It was found that PET samples kept in the nitrating atmosphere (obtained by vaporizing 12 mol L-1 HNO3) at a temperature of 403-463 K (130-190 °C) for 5-24 h dissolve in 0.5 mol L-1 NaOH, in contrast to the untreated PET samples. Ozonation of the obtained alkaline solutions leads to a complete decomposition of the organic compounds present in the solutions. The resulting PET decomposition degree is higher than 99.9 % irrespective of the plastic color. In addition, the possibility of terephthalic acid recovery from the alkaline solutions of the conversion products was shown.

8.
Biochemistry (Mosc) ; 84(7): 711-719, 2019 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-31509723

RESUMO

PD-1/PD-L1-based therapy has been named a revolution in cancer treatment. By the end of 2018, more than 100 anti-PD-1 and anti-PD-L1 antibodies were in various stages of development, and more than 2000 clinical trials with their use have been registered. Characterization of such antibodies requires a bioassay to determine their biological activity. In this study, we developed a cell-based bioassay for analyzing the activity of anti-PD-1 and anti-PD-L1 antibodies. We chose reporter system consisting of two cell lines and compared several approaches for activation of effector cell line based on superantigens, soluble anti-CD3 antibodies, transmembrane anti-CD3 antibodies, chimeric antigenic receptors (CARs) and bispecific T-cell engager antibodies. The bispecific T-cell engager antibodies offer several advantages over the other approaches. We characterized the bioassay and demonstrated its applicability for analyzing the activity of anti-PD-1 and anti-PD-L1 antibodies. The proposed bioassay can be useful in the development of new therapeutic agents and methods for their characterization.


Assuntos
Anticorpos Monoclonais/imunologia , Antígeno B7-H1/imunologia , Bioensaio/métodos , Medições Luminescentes/métodos , Receptor de Morte Celular Programada 1/imunologia , Linfócitos T/imunologia , Anticorpos Biespecíficos , Antígenos de Superfície/imunologia , Antígeno B7-H1/antagonistas & inibidores , Complexo CD3/metabolismo , Genes Reporter , Vetores Genéticos , Humanos , Células Jurkat , Ativação Linfocitária , Fatores de Transcrição NFATC/metabolismo , Receptor de Morte Celular Programada 1/antagonistas & inibidores , Receptores de Antígenos Quiméricos/genética
9.
Bull Exp Biol Med ; 166(1): 43-45, 2018 Nov.
Artigo em Inglês | MEDLINE | ID: mdl-30417284

RESUMO

We studied the mutagenic effect of X-ray irradiation in doses of 0.5, 1, and 1.5 Gy on female (CBA×C57Bl/6)F1 mice. The mutagenic effect (assessed by the parameter "frequency of bone marrow polychromatophilic erythrocytes with micronuclei") linearly depended on the dose of X-ray irradiation in the range of up to 1 Gy and reached the plateau at 1.5 Gy. The fraction of polychromatophilic erythrocytes was 45, 45, and 46% under control conditions (without exposure) and exposure to the irradiation in the doses of 0.5 and 1 Gy, respectively. Irradiation in a dose of 1.5 Gy induced a slight inhibition of erythropoiesis. These data confirm the hypothesis on possible death of highly aberrant erythrocyte precursors after irradiation in high doses.


Assuntos
Eritrócitos/efeitos da radiação , Mutagênicos/efeitos adversos , Radiação Ionizante , Raios X , Animais , Feminino , Camundongos , Camundongos Endogâmicos C57BL , Camundongos Endogâmicos CBA , Testes para Micronúcleos
10.
Biochemistry (Mosc) ; 83(Suppl 1): S81-S102, 2018 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-29544433

RESUMO

Cell screening or, in other words, identification of cells with certain properties is now increasingly used in scientific and medical research, e.g., in diagnostics, drug testing, and production of cell clones with desired characteristics. In this review, we discuss existing methods of cell screening and their classification according to the cell presentation format. We describe the principles of the one-dimensional and two-dimensional formats and compare the main advantages and drawbacks of these formats. The first part describes the methods based on the 2D-format of cell presentation, when cells are immobilized in the same plane by various techniques. The second part describes the methods of the 1D-screening, when cells are aligned in a line in a stream of fluid and scanned one-by-one while passing through a detector. The final part of the review describes the method of high-performance cell analysis based on the merged gel technique. This technique combines the advantages of both 1D and 2D formats and, according to the authors, might become an effective alternative to many modern methods of cell screening.


Assuntos
Separação Celular , Animais , Contagem de Células , Humanos
11.
Bull Exp Biol Med ; 163(6): 814-817, 2017 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-29063318

RESUMO

A new method for selection of bacterium antibiotic resistance genes is proposed and tested for solving the problems related to selection of primers for PCR assay. The method implies clustering of similar nucleotide sequences and selection of group primers for all genes of each cluster. Clustering of resistance genes for six groups of antibiotics (aminoglycosides, ß-lactams, fluoroquinolones, glycopeptides, macrolides and lincosamides, and fusidic acid) was performed. The method was tested for 81 strains of bacteria of different genera isolated from patients (K. pneumoniae, Staphylococcus spp., S. agalactiae, E. faecalis, E. coli, and G. vaginalis). The results obtained by us are comparable to those in the selection of individual genes; this allows reducing the number of primers necessary for maximum coverage of the known antibiotic resistance genes during PCR analysis.


Assuntos
Antibacterianos/farmacologia , Técnicas de Tipagem Bacteriana/métodos , Primers do DNA/síntese química , DNA Bacteriano/genética , Farmacorresistência Bacteriana Múltipla/genética , Reação em Cadeia da Polimerase/métodos , Aminoglicosídeos/farmacologia , Primers do DNA/genética , Enterococcus faecalis/efeitos dos fármacos , Enterococcus faecalis/genética , Enterococcus faecalis/crescimento & desenvolvimento , Escherichia coli/efeitos dos fármacos , Escherichia coli/genética , Escherichia coli/crescimento & desenvolvimento , Fluoroquinolonas/farmacologia , Ácido Fusídico/farmacologia , Gardnerella vaginalis/efeitos dos fármacos , Gardnerella vaginalis/genética , Gardnerella vaginalis/crescimento & desenvolvimento , Glicopeptídeos/farmacologia , Klebsiella pneumoniae/efeitos dos fármacos , Klebsiella pneumoniae/genética , Klebsiella pneumoniae/crescimento & desenvolvimento , Lincosamidas/farmacologia , Macrolídeos/farmacologia , Testes de Sensibilidade Microbiana , Família Multigênica , Staphylococcus/efeitos dos fármacos , Staphylococcus/genética , Staphylococcus/crescimento & desenvolvimento , Streptococcus agalactiae/efeitos dos fármacos , Streptococcus agalactiae/genética , Streptococcus agalactiae/crescimento & desenvolvimento , beta-Lactamas/farmacologia
12.
Genetika ; 52(9): 1097-102, 2016 Sep.
Artigo em Russo | MEDLINE | ID: mdl-29369564

RESUMO

According to the results of analysis of whole genome sequencing, the presence of genes having resistance to ß-lactam antibiotics in hospital-associated strains of Klebsiella pneumoniae was studied. The strains were isolated from neonatal intensive care units. The data obtained were compared with the results of antimicrobial susceptibility testing of isolated microorganisms. Among other strains resistant to cephalosporins, the dominance of genes of CTX-M-type extended-spectrum ß-lactamases was shown. It was revealed that one of eight strains phenotypically resistant and moderately resistant to carbapenems have the blaOXA-48 carbapenemase gene.


Assuntos
Proteínas de Bactérias/genética , Resistência às Cefalosporinas , Klebsiella pneumoniae/genética , beta-Lactamases/genética , Feminino , Humanos , Doença Iatrogênica , Recém-Nascido , Klebsiella pneumoniae/enzimologia , Klebsiella pneumoniae/isolamento & purificação , Masculino
13.
Radiats Biol Radioecol ; 55(4): 395-401, 2015.
Artigo em Russo | MEDLINE | ID: mdl-26601539

RESUMO

It was shown that the kinetics of changes of γH2AX foci number (marker of DNA double-strand breaks) in human skin fibroblasts after exposure to low doses of X-ray radiation (20, 40 and 80 mGy) differs from that observed after exposure to medium-low doses (160 and 240 mGy). After exposure to 160 and 240 mGy the highest number of γH2AX foci was detected at 30 min after exposure (first experimental point) and further their decrease was observed. At the same time we observed a fast phase of repair (upto 4 h), in which there was a decrease of the foci amount to ~50-60% and a slow phase of repair (from 4 h to 24 h). After 24 h only ~3-5% of the foci amount observed at 30 min after irradiation was left. After exposure to low doses, the foci number did not decrease during 2 h and even 24 h after exposure their amount was ~25% from that observed at maximum points (1 h after irradiation at 40 and 80 mGy and 2 h after irradiation at 20 mGy).


Assuntos
Quebras de DNA de Cadeia Dupla , Reparo do DNA , Fibroblastos/efeitos da radiação , Histonas/genética , Pele/efeitos da radiação , Raios X/efeitos adversos , Células Cultivadas , Relação Dose-Resposta à Radiação , Fibroblastos/patologia , Voluntários Saudáveis , Humanos , Cinética , Masculino , Pessoa de Meia-Idade , Pele/patologia , Fatores de Tempo
14.
Ter Arkh ; 87(5): 4-9, 2015.
Artigo em Russo | MEDLINE | ID: mdl-26155613

RESUMO

In the past decade, investigators' undeniable and justified interest has not been fading in comorbidities in the presence of rheumatic diseases. The terms "comorbidity" and "multimorbidity" are frequently and not always consciously used as interinterchangeable, confusing the terminology and accordingly the elaboration of strategies for further researches. The concepts "(co-occurring disease" and "multimodality" are not mutually exclusive or contradictory, but these should be considered from another point of view than "comorbidity". The problem of multimorbid disease is the rule rather than the exception for clinicians treating primarily "typical" rheumatic patients. Recent researches could outline a few key areas for further study of the concept of multimorbidity in rheumatologic practice, which will be able to turn the international research community from rheumatic disease to the patient as a whole.


Assuntos
Comorbidade , Doenças Reumáticas , Humanos , Doenças Reumáticas/epidemiologia
15.
Ter Arkh ; 87(5): 84-89, 2015.
Artigo em Russo | MEDLINE | ID: mdl-26155624

RESUMO

Hemophagocytic syndrome (HPS) is a rare life-threatening condition caused by massive cytokine release from activated macrophages and lymphocytes. The paper depicts the development of HPS in different infections, malignancies, and autoimmune diseases. It describes a clinical case of hemophagocytic syndrome in a 63-year-old female patient with adult-onset Still's disease and high fever accompanied by neutrophil leukocytosis and a drastic left leukocyte count shift, high procalcitonin levels, hepatosplenomegaly, edematous syndrome, and progressive multiple organ dysfunction with the development of disseminated intravascular coagulation and adult respiratory distress syndrome. The diagnosis of HPS was established according to the diagnostic criteria and verified by autopsy: phagocytes in liver and lung tissues.


Assuntos
Linfo-Histiocitose Hemofagocítica/diagnóstico , Doença de Still de Início Tardio/complicações , Evolução Fatal , Feminino , Humanos , Linfo-Histiocitose Hemofagocítica/etiologia , Pessoa de Meia-Idade
16.
Autoimmunity ; 42(6): 525-36, 2009 Sep.
Artigo em Inglês | MEDLINE | ID: mdl-19657773

RESUMO

Ankylosing spondylitis (AS) is commonly characterized by clonal expansions of T cells. However, these clonal populations are poorly studied and their role in disease initiation and progression remains unclear. Here, we performed mass sequencing of TCR V beta libraries to search for the expanded T cell clones for two AS patients. A number of clones comprising more than 5% of the corresponding TCR V beta family were identified in both patients. For the first time, expanded clones were shown to be stably abundant in blood samples of AS patients for the prolonged period (1.5 and 2.5 years for two patients, correspondingly). These clones were individually characterized in respect to their differentiation status using fluorescent cell sorting with CD27, CD28, and CD45RA markers followed by quantitative identification of each clone within corresponding fraction using real time PCR analysis. Stable clones differed in phenotype and several were shown to belong to the proinflammatory CD27 - /CD28 - population. Their potentially cytotoxic status was confirmed by staining with perforin-specific antibodies. Search for the TCR V beta CRD3 sequences homologous to the identified clones revealed close matches with the previously reported T cell clones from AS and reactive arthritis patients, thus supporting their role in the disease and proposing consensus TCR V beta CDR3 motifs for AS. Interestingly, these motifs were also found to have homology with earlier reported virus-specific CDR3 variants, indicating that viral infections could play role in development of AS.


Assuntos
Complexo CD3 , Ativação Linfocitária , Receptores de Antígenos de Linfócitos T , Espondilite Anquilosante/imunologia , Linfócitos T/imunologia , Sequência de Aminoácidos , Complexo CD3/química , Complexo CD3/genética , Complexo CD3/metabolismo , Células Clonais/imunologia , Citometria de Fluxo , Humanos , Masculino , Pessoa de Meia-Idade , Dados de Sequência Molecular , Perforina/metabolismo , Receptores de Antígenos de Linfócitos T/genética , Receptores de Antígenos de Linfócitos T/metabolismo , Análise de Sequência de DNA , Linfócitos T/química
17.
Mol Biol (Mosk) ; 43(3): 521-6, 2009.
Artigo em Russo | MEDLINE | ID: mdl-19548538

RESUMO

A database of 926 (alpha + beta)-proteins and (alpha + beta)-domains containing abCd-units (among them 401 are nonhomologous) has been compiled from the Protein Data Bank (total 2636 PDB entries). A novel structural tree for this structural class of proteins that is composed of 286 possible polypeptide chain folds has been constructed. The structural classification of (alpha + beta)-proteins containing abCd-unit based on the structural tree has been developed. Both the database and the structural tree are accessible at the web-site (http://strees.protres.ru/).


Assuntos
Bases de Dados de Proteínas , Proteínas/química , Proteínas/classificação , Modelos Moleculares , Conformação Proteica , Dobramento de Proteína
19.
Mol Biol (Mosk) ; 42(2): 323-6, 2008.
Artigo em Russo | MEDLINE | ID: mdl-18610841

RESUMO

A database of 528 beta-proteins and beta-domains containing abcd-units (among them 244 are nonhomologous) has been compiled from the Protein Data Bank (total 1511 PDB entries). A novel structural tree for this structural class of proteins that is composed of 153 possible polypeptide chain folds has been constructed. The structural classification of beta-proteins containing abcd-unit based on the structural tree has been developed. Both the database and the structural tree are accessible at the web-site (http://strees.protres.ru/).


Assuntos
Bases de Dados de Proteínas , Estrutura Secundária de Proteína/genética , Proteínas/genética , Proteínas/classificação , Homologia de Sequência de Aminoácidos
20.
Phys Rev E Stat Nonlin Soft Matter Phys ; 76(2 Pt 2): 027301, 2007 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-17930181

RESUMO

The temperature dependence of the effective kinematic viscosity of turbulent He II, nu(eff)(T) , is deduced from second sound attenuation data using the late stage of decay of thermally induced counterflow He II turbulence in two channels of square cross section. It is shown to qualitatively agree with the published data for nu(eff)(T) calculated based on experiments on decaying-grid-generated He II turbulence [Niemela, J. Low Temp. Phys. 138, 537 (2005)]. Corrections to these data due to the "sine squared" law that describes attenuation of the second sound wave propagating along an arbitrary direction with respect to the direction of the core of a quantized vortex in turbulent He II are discussed and applied.

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