Evaluating community-level response to management actions across a diverse Hawaiian forest bird community.

Although species-specific approaches are necessary to understand the dynamics of individual species composing a community, they do not offer a framework for making optimal management decisions at the community level. Here, we present a simple framework for comparing the response of entire communities to multiple management scenarios. Our approach uses a weighted average of standardized species-specific responses to produce a single integrative measure of the community response and employs mixed-effect linear models to quantify the increase in the community response due to each management action, or combination of actions. We demonstrate our approach with a simulation study assessing the potential benefits of multiple management actions on the avian community of Hakalau Forest National Wildlife Refuge, Hawai'i, which is composed of eight native species with conservation status varying from endangered to least concern. Management actions considered included a reduction of avian malaria transmission risk, reducing rat predation, and increasing forest habitat. We used three different prioritization (weighting) schemes to assess whether the response to management actions differed along a conservation gradient (from endangered to least concern). We also investigated whether future changes in disease distribution as a result of climate change will alter the relationship between management practices and community response. Our community-level analysis produced three important insights, highlighting the need to consider the response from multiple species to changing threats and management actions. First, increasing the amount of habitat always had the greatest positive impact on the avian community, regardless of the weighting scheme. Second, the community response to management was different under current vs. future conditions, with increased benefit in the future when disease risks were higher. Third, the response to management varied along the conservation gradient. Reducing malaria transmission risk in 2100 had the greatest benefit to endangered species, while increasing forest habitat had the greatest benefit to "least concern" species. However, reducing rat predation appeared to benefit a subset of species based on ecological factors unrelated to rarity, such as nest accessibility. Our approach is widely applicable using experimental, observational, or simulation-based data, allowing managers to consider the response of all species while weighting their priority levels.

Geographic segregation and evidence of density-dependent changes in sex ratios in an abundant colonial waterbird.

Demographic information, such as geographic segregation of sexes and sex ratio data, is needed to develop, model and evaluate conservation and management strategies for wildlife. A variety of physiological, behavioral and environmental factors can influence segregation of sexes and sex ratios, many of which originate with density-dependent processes. Departure from 50:50 sex ratios of double-crested cormorants (Phalacrocorax auritus) collected during control efforts in breeding and wintering areas across their eastern range of the USA were evaluated using using a Z-test as well as Stouffer's weighted Z-tests. In addition, a specifically-designed randomization test was used to evaluate density-dependent effects on primary sex ratios in cormorants from egg collections and colony nest count data over a 21-year period. Cormorants collected from breeding colonies were strongly male-biased, whereas cormorants collected from feeding flocks were slightly biased toward females. Cormorants were partly segregated by sex on the wintering grounds, with significantly more males found in areas with intensive channel catfish aquaculture. The null hypothesis that females produced a balanced sex ratio independent of number of nesting cormorants was rejected: more male embryos were produced during rapid population growth, whereas at maximum nesting number more female embryos were produced. Once populations stabilized, the sex ratio was more equal. This examination of sex ratios indicates that different management methods and locations result in sex-biased culling of cormorants. Sex-biased culling in cormorants could make population reduction efforts more efficient and reduce overall take. We suggest further research to examine density-dependent effects on primary sex ratios documented here.

Multilocus phylogeny of the avian family Alaudidae (larks) reveals complex morphological evolution, non-monophyletic genera and hidden species diversity.

The Alaudidae (larks) is a large family of songbirds in the superfamily Sylvioidea. Larks are cosmopolitan, although species-level diversity is by far largest in Africa, followed by Eurasia, whereas Australasia and the New World have only one species each. The present study is the first comprehensive phylogeny of the Alaudidae. It includes 83.5% of all species and representatives from all recognised genera, and was based on two mitochondrial and three nuclear loci (in total 6.4 kbp, although not all loci were available for all species). In addition, a larger sample, comprising several subspecies of some polytypic species was analysed for one of the mitochondrial loci. There was generally good agreement in trees inferred from different loci, although some strongly supported incongruences were noted. The tree based on the concatenated multilocus data was overall well resolved and well supported by the data. We stress the importance of performing single gene as well as combined data analyses, as the latter may obscure significant incongruence behind strong nodal support values. The multilocus tree revealed many unpredicted relationships, including some non-monophyletic genera (Calandrella, Mirafra, Melanocorypha, Spizocorys). The tree based on the extended mitochondrial data set revealed several unexpected deep divergences between taxa presently treated as conspecific (e.g. within Ammomanes cinctura, Ammomanes deserti, Calandrella brachydactyla, Eremophila alpestris), as well as some shallow splits between currently recognised species (e.g. Certhilauda brevirostris-C. semitorquata-C. curvirostris; Calendulauda barlowi-C. erythrochlamys; Mirafra cantillans-M. javanica). Based on our results, we propose a revised generic classification, and comment on some species limits. We also comment on the extraordinary morphological adaptability in larks, which has resulted in numerous examples of parallel evolution (e.g. in Melanocorypha mongolica and Alauda leucoptera [both usually placed in Melanocorypha]; Ammomanopsis grayi and Ammomanes cinctura/deserti [former traditionally placed in Ammomanes]; Chersophilus duponti and Certhilauda spp.; Eremopterix hova [usually placed in Mirafra] and several Mirafra spp.), as well as both highly conserved plumages (e.g. within Mirafra) and strongly divergent lineages (e.g. Eremopterix hova vs. other Eremopterix spp.; Calandrella cinerea complex vs. Eremophila spp.; Eremalauda dunni vs. Chersophilus duponti; Melanocorypha mongolica and male M. yeltoniensis vs. other Melanocorypha spp. and female M. yeltoniensis). Sexual plumage dimorphism has evolved multiple times. Few groups of birds show the same level of disagreement between taxonomy based on morphology and phylogenetic relationships as inferred from DNA sequences.

Climate-driven diversification in two widespread Galerida larks.

BACKGROUND: The major impact of Plio-Pleistocene climatic oscillations on the current genetic structure of many species is widely recognised but their importance in driving speciation remains a matter of controversies. In addition, since most studies focused on Europe and North America, the influence of many other biogeographic barriers such as the Sahara remains poorly understood. In this paper, climate-driven diversification was investigated by using a comparative phylogeographic approach in combination with phenotypic data in two avian species groups distributed on both sides of the deserts belt of Africa and Asia. In particular, we tested whether: 1) vicariance diversification events are concomitant with past climatic events; and 2) current ecological factors (using climate and competition as proxies) contribute to phenotypic divergence between allopatric populations. RESULTS: Mitochondrial and nuclear sequence data indicated that the crested and Thekla lark species groups diverged in the early Pliocene and that subsequent speciation events were congruent with major late Pliocene and Pleistocene climatic events. In particular, steep increase in aridity in Africa near 2.8 and 1.7 million years ago were coincident with two north-south vicariance speciation events mediated by the Sahara. Subsequent glacial cycles of the last million years seem to have shaped patterns of genetic variation within the two widespread species (G. cristata and G. theklae). The Sahara appears to have allowed dispersal from the tropical areas during climatic optima but to have isolated populations north and south of it during more arid phases. Phenotypic variation did not correlate with the history of populations, but was strongly influenced by current ecological conditions. In particular, our results suggested that (i) desert-adapted plumage evolved at least three times and (ii) variation in body size was mainly driven by interspecific competition, but the response to competition was stronger in more arid areas. CONCLUSION: Climatic fluctuations of the Plio-Pleistocene strongly impacted diversification patterns in the Galerida larks. Firstly, we found that cladogenesis coincides with major climatic changes, and the Sahara appears to have played a key role in driving speciation events. Secondly, we found that morphology and plumage were strongly determined by ecological factors (interspecific competition, climate) following vicariance.

History of the Crested Lark in the Mediterranean region as revealed by mtDNA sequences and morphology.

The Crested Lark has a very complex taxonomy, partly as a result of a strong variation in plumage ground color seemingly linked with environmental factors. However, large variations in body size and bill shape further complicate the situation in the Maghreb. In this paper, we first present a set of hypotheses to explain patterns of morphological variation around the Mediterranean Sea. A phylogeographical analysis covering all major biogeographical areas in the species' range is then performed to test these scenarios. Three mtDNA groups with distinct geographical distribution were identified. The randonii clade (= G. (c.) randonii) is endemic from central Maghreb and is phylogenetically basal relative to cristata and senegallensis. These two latter groups are much more widespread. The cristata clade is found in NW Morocco, throughout Europe and W Asia and in NE Africa, while senegallensis regroups the populations sampled in the Western Sub-Saharan Africa and in NE Maghreb (E Algeria, Tunisia). A combination of genetic and paleoenvironmental evidences supports a scenario of allopatric differentiation of these two lineages outside the Maghreb, with subsequent range expansion leading to their secondary presence in the Maghreb. However, the alternative hypothesis of differentiation in two, or even three separate Maghreb refuges cannot be completely dismissed with the present data. Interestingly, the Sahara desert and the Gibraltar Strait did not act as permanent barriers to dispersal in this species. In addition, the populations in the Maghreb are consistently longer-billed than their closest relatives, suggesting a role for natural selection or phenotypic plasticity.