Microplastics alter soil structural stability as quantified by high-energy moisture characteristics.

Microplastics (MiPs) can potentially influence soil structural stability, with impacts likely dependent on their chemistry, concentration, size, and degradation in soil. This study used high-energy moisture characteristics (HEMC; water retention at matric suctions from 0 to 50 hPa) to quantify the effects of these MiP properties on soil structure stabiltiy. The HEMCs of soil samples contaminated with polypropylene (PP) or polyethylene (PE) were measured and modelled. Greater MiP concentrations (2 % and 7 % w w-1) increased the volume of drainable pores (VDP). At smaller MiP concentrations (0.5 % and 1 % w w-1), larger MiP fibres (3 and 5 mm) exhibited higher VDP values compared to a smaller size (1.6 mm) across a range of concentrations. Both PE and PP MiPs increased the modal matric suction (hmodal). The impacts on VDP and hmodal were more pronounced for fast than slow wetting, likely due to MiPs fibres entangling around soil aggregates, and MiPs pores filling after aggregate slaking, respectively. Soil structural index (SI) and stability ratio (SR) values increased following MiP incorporation. Our findings revealed the detrimental impacts of MiPs on soil aggregates and pores, demonstrating that MiPs significantly influence HEMC parameters due to combined impacts on structure stability and pore distribution. ENVIRONMENTAL IMPLICATION: Microplastics have emerged as a major anthropogenic hazardous material in the soil environment, with secondary impacts on soil structure and aggregate stability. Our study indicates that MiPs alter water retention, pore distribution, and soil hydraulic properties, affecting soil's ability to retain and supply water. The introduction of MiPs leads to the destruction of soil aggregates and pores, compromising soil health and productivity. By characterising structural stability and pore structure dynamics using HEMC, this study highlights the sensitivity of MiP impacts, emphasizing the need for comprehensive assessment and strategies to preserve soil ecosystem functioning in the face of increasing MiP pollution.

Contrasting transport and fate of hydrophilic and hydrophobic bacteria in wettable and water-repellent porous media: Straining or attachment?

Bacterial transport and retention likely depend on bacterial and soil surface properties, especially hydrophobicity. We used a controlled experimental setup to explore hydrophilic Escherichia coli (E. coli) and hydrophobic Rhodococcus erythropolis (PTCC1767) (R. erythropolis) transport through dry (- 15,000 cm water potential) and water saturated (0 cm water potential) wettable and water-repellent sand columns. A pulse of bacteria (1 × 108 CFU mL-1) and bromide (10 mmol L-1) moved through the columns under saturated flow (0 cm) for four pore volumes. A second bacteria and bromide pulse was then poured on the column surfaces and leaching was extended six more pore volumes. In dry wettable sand attachment dominated E. coli retention, whereas R. erythropolis was dominated by straining. Once wetted, the dominant retention mechanisms flipped between these bacteria. Attachment by either bacteria decreased markedly in water-repellent sand, so straining was the main retention mechanism. We explain this from capillary potential energy, which enhanced straining under the formation of water films at very early times (i.e., imbibing) and film thinning at much later times (i.e., draining). The interaction between the hydrophobicity of bacteria and soil on transport, retention and release mechanisms needs greater consideration in predictions.

Biochar and flow interruption control spatio-temporal dynamics of fecal coliform retention under subsurface drip irrigation.

Applying wastewater in subsurface drip irrigation helps address water shortage in arid and semi-arid environments. Microbial contamination may result, but soil amendments such as biochar could help protect soil and water resources. To improve understanding, this study investigated spatio-temporal dynamics of fecal coliform retention in a biochar-treated soil under subsurface drip irrigation. Two dripper discharges rates of 2 and 4 l hr-1 containing fecal coliforms (3.99 ± 1.4 × 105 CFU ml-1), three maximum allowable depletion levels (MAD; 30, 50, and 70%), and three biochar levels (0, 0.5 and 1%, w/w) were used. The lysimeters were filled with biochar-treated soil and had drippers located at 20 cm depth. Three irrigations were performed for either Q, and soil samples were taken after each irrigation at different times at the lysimeter centre at 5, 15, 25, and 50 cm depths and at the edge at 20 cm depth (labeled 20 L). Soils containing biochar had much greater recovered coliforms from soil than the unamended controls. The greatest retention was at 15 and 25 cm depth (within 5 cm of the dripper) for 1% biochar, with the recovered cells about 70% for 2 l hr-1 discharge and 60% for 4 l hr-1 discharge. The greatest concentration occurred immediately after irrigation, but over 10 days the number of coliforms gradually decreased and inactivated. Therefore, the coliform residence time, soil depth, and biochar rate all influenced coliform retention if the discharge rates and MADs were considered. We recommend slower subsurface dripper rates with high MAD and biochar amendment to minimize fecal coliform contamination from subsurface field wastewater irrigation.

Building soil sustainability from root-soil interface traits.

Great potential exists to harness plant traits at the root-soil interface, mainly rhizodeposition and root hairs, to 'build' soils with better structure that can trap more carbon and resources, resist climate stresses, and promote a healthy microbiome. These traits appear to have been preserved in modern crop varieties, but scope exists to improve them further because they vary considerably between genotypes and respond to environmental conditions. From emerging evidence, rhizodeposition can act as a disperser, aggregator, and/or hydrogel in soil, and root hairs expand rhizosheath size. Future research should explore impacts of selecting these traits on plants and soils concurrently, expanding from model plants to commercial genotypes, and observing whether impacts currently limited to glasshouse studies occur in the field.

A systematic analysis and review of the impacts of afforestation on soil quality indicators as modified by climate zone, forest type and age.

This global systematic analysis and review investigate the impacts of previous land use system, climate zone, forest type and forest age on soil organic carbon (SOC), total nitrogen (TN), total phosphorus (TP) stock, soil bulk density (BD) and pH at soil layers 0-20, 20-60 and 60-100 cm, following afforestation. Data came from 91 publications on SOC, TN and TP stock changes, covering different countries and climate zones. Overall, afforestation significantly increased SOC by 46%, 52% and 20% at 0-20, 20-60 and 60-100 cm depths, respectively. It also significantly increased shallower TN stocks by 28% and 22% at 0-20 and 20-60 cm depths, respectively, but had no overall impacts on TP. Previous land use system had the largest influence on SOC, TN and TP stock changes, with greater accumulations on barren land compared to cropland and grassland. Climate zone influenced SOC, TN and TP stock changes, with greater accumulations for moist cool than other climate zones. Broadleaf forests were better than coniferous forests for increasing SOC, TN and TP stocks of the investigated soil profile (0-100 cm). Afforestation for <20 years accumulated SOC and TN stocks only at the soil surface (0-20 cm), whilst afforestation for >20 years accumulated SOC and TN stocks to 100 cm soil depth. Changes to SOC and TN were positively correlated at depths down to 100 cm under all age groups, demonstrating that an increase TN could offset progressive N limitation, and maintains SOC accumulation as forests age. TP stock decreased significantly in topsoil (0-20 cm) for <20-year-old forest and did not change for >20-year-old forest, suggesting that it may become a limiting factor for carbon sequestration as forests age. Following afforestation, soil BD decreased alongside significant increases in SOC and TN stocks to 100 cm depth, but had no relationship with TP.

Deep Nitrate Accumulation in a Highly Weathered Subtropical Critical Zone Depends on the Regolith Structure and Planting Year.

Nitrate accumulated deep (>100 cm) in the regolith (soil and saprolite) threatens groundwater quality, but most studies focus only on nitrate nearer the surface (<100 cm). Surface soil management versus regolith interactions affect deep nitrate leaching, but their combined impact remains unclear. This study measured how deep nitrate accumulation was affected by crop practices including orchard/cropland planting years, regolith structure, and soil properties in highly weathered subtropical red soils. Deep nitrate storage varied from 43.6 to 1116.3 kg ha-1. Regolith thickness was positively correlated with nitrate storage (R2 = 0.43, p < 0.05). Reticulated red clay (110-838 cm) had 81% of the accumulated nitrate and overlapped with 79% of the nitrate accumulation layer. All of the nitrate accumulation parameters (except for peak depth (PD)) generally increased with the planting years. The difference in peak nitrate concentration (9.0-20.0 mg kg-1) with planting year gradient (3-58 years) varied by 2.2 times, and the difference in nitrate storage (43.6-425.7 kg ha-1) varied by 9.8 times. Texture and pH explain 41.6% of the variation in nitrate concentration. As soil management practices interact with deeper regolith to control the spatial pattern of nitrate accumulation, vulnerable regions could be identified to avoid high accumulation.

A framework for modelling soil structure dynamics induced by biological activity.

Soil degradation is a worsening global phenomenon driven by socio-economic pressures, poor land management practices and climate change. A deterioration of soil structure at timescales ranging from seconds to centuries is implicated in most forms of soil degradation including the depletion of nutrients and organic matter, erosion and compaction. New soil-crop models that could account for soil structure dynamics at decadal to centennial timescales would provide insights into the relative importance of the various underlying physical (e.g. tillage, traffic compaction, swell/shrink and freeze/thaw) and biological (e.g. plant root growth, soil microbial and faunal activity) mechanisms, their impacts on soil hydrological processes and plant growth, as well as the relevant timescales of soil degradation and recovery. However, the development of such a model remains a challenge due to the enormous complexity of the interactions in the soil-plant system. In this paper, we focus on the impacts of biological processes on soil structure dynamics, especially the growth of plant roots and the activity of soil fauna and microorganisms. We first define what we mean by soil structure and then review current understanding of how these biological agents impact soil structure. We then develop a new framework for modelling soil structure dynamics, which is designed to be compatible with soil-crop models that operate at the soil profile scale and for long temporal scales (i.e. decades, centuries). We illustrate the modelling concept with a case study on the role of root growth and earthworm bioturbation in restoring the structure of a severely compacted soil.

Transport, retention, and release of Escherichia coli and Rhodococcus erythropolis through dry natural soils as affected by water repellency.

Microbial transport in soil affects pathogen retention, colonization, and innoculant delivery in bioremediating agricultural soils. Various bacteria strains residing in the fluid phases of soils are potential contaminants affecting human health. We measured the transport of hydrophilic Escherichia coli (E. coli) and hydrophobic Rhodococcus erythropolis (R. erythropolis) bacteria through initially air-dried wettable or water-repellent soil columns to understand the effect of water repellency and the hydrophobicity of the organism on its retention, release, and transport properties. Bacteria suspensions infiltrated the top of the columns under saturated (0 cm) and unsaturated (-5 cm) flows in the air-dried (pulse 1) and rewetting (pulse 2) conditions. Cells were recovered from the leachates and the soil extracts by the viable counts. Wettable soil efficiently retained both hydrophobic and hydrophilic bacteria (>80%) in initial air-dried conditions (pulse 1). Even after rewetting, and the formation and expansion of water films and corresponding reduction of the air-water interfacial area (pulse 2), few bacteria were released (maximum 31.5% and 10.1% for saturated and unsaturated flows, respectively), whereas more cells were released from the water-repellent counterpart (more that 72%). The smaller size of hydrophobic R. erythropolis made cell transport possible within the thinner water films of both soils compared to hydrophilic E. coli through pulses 1 and 2. The shape of each strain's retention profiles was uniform and exponential as influenced by soil, strain, and water flow conditions. The results suggest that hydrophobic bacteria will disperse readily when leached into initially dry soil, while hydrophilic bacteria are more susceptible to leaching, posing a risk of pathogen contamination. Clearly the wettability of soil and organisms affects fate and transport.

Imaging microstructure of the barley rhizosphere: particle packing and root hair influences.

Soil adjacent to roots has distinct structural and physical properties from bulk soil, affecting water and solute acquisition by plants. Detailed knowledge on how root activity and traits such as root hairs affect the three-dimensional pore structure at a fine scale is scarce and often contradictory. Roots of hairless barley (Hordeum vulgare L. cv Optic) mutant (NRH) and its wildtype (WT) parent were grown in tubes of sieved (<250 µm) sandy loam soil under two different water regimes. The tubes were scanned by synchrotron-based X-ray computed tomography to visualise pore structure at the soil-root interface. Pore volume fraction and pore size distribution were analysed vs distance within 1 mm of the root surface. Less dense packing of particles at the root surface was hypothesised to cause the observed increased pore volume fraction immediately next to the epidermis. The pore size distribution was narrower due to a decreased fraction of larger pores. There were no statistically significant differences in pore structure between genotypes or moisture conditions. A model is proposed that describes the variation in porosity near roots taking into account soil compaction and the surface effect at the root surface.

Interaction between contrasting rice genotypes and soil physical conditions induced by hydraulic stresses typical of alternate wetting and drying irrigation of soil.

BACKGROUND AND AIMS: Alternate wetting and drying (AWD) saves water in paddy rice production but could influence soil physical conditions and root growth. This study investigated the interaction between contrasting rice genotypes, soil structure and mechanical impedance influenced by hydraulic stresses typical of AWD. METHODS: Contrasting rice genotypes, IR64 and deeper-rooting Black Gora were grown in various soil conditions for 2 weeks. For the AWD treatments the soil was either maintained in a puddled state, equilibrated to -5 kPa (WET), or dried to -50 kPa and then rewetted at the water potential of -5 kPa (DRY-WET). There was an additional manipulated macropore structure treatment, i.e. the soil was broken into aggregates, packed into cores and equilibrated to -5 kPa (REPACKED). A flooded treatment (puddled soil remained flooded until harvest) was set as a control (FLOODED). Soil bulk density, penetration resistance and X-ray Computed Tomography (CT) derived macropore structure were measured. Total root length, root surface area, root volume, average diameter, and tip number were determined by WinRhizo. RESULTS: AWD induced formation of macropores and slightly increased soil mechanical impedance. The total root length of the AWD and REPACKED treatments were 1.7-2.2 and 3.5-4.2 times greater than that of the FLOODED treatment. There was no significant difference between WET and DRY-WET treatments. The differences between genotypes were minimal. CONCLUSIONS: AWD influenced soil physical properties and some root characteristics of rice seedlings, but drying soil initially to -50 kPa versus -5 kPa had no impact. Macropores formed intentionally from repacking caused a large change in root characteristics.

High-resolution synchrotron imaging shows that root hairs influence rhizosphere soil structure formation.

In this paper, we provide direct evidence of the importance of root hairs on pore structure development at the root-soil interface during the early stage of crop establishment. This was achieved by use of high-resolution (c. 5 µm) synchrotron radiation computed tomography (SRCT) to visualise both the structure of root hairs and the soil pore structure in plant-soil microcosms. Two contrasting genotypes of barley (Hordeum vulgare), with and without root hairs, were grown for 8 d in microcosms packed with sandy loam soil at 1.2 g cm-3 dry bulk density. Root hairs were visualised within air-filled pore spaces, but not in the fine-textured soil regions. We found that the genotype with root hairs significantly altered the porosity and connectivity of the detectable pore space (> 5 µm) in the rhizosphere, as compared with the no-hair mutants. Both genotypes showed decreasing pore space between 0.8 and 0.1 mm from the root surface. Interestingly the root-hair-bearing genotype had a significantly greater soil pore volume-fraction at the root-soil interface. Effects of pore structure on diffusion and permeability were estimated to be functionally insignificant under saturated conditions when simulated using image-based modelling.

Mapping and expression of genes associated with raspberry fruit ripening and softening.

KEY MESSAGE: QTL mapping identifies a range of underlying and unrelated genes with apparent roles in raspberry fruit ripening and softening that show characteristic developing fruit expression profiles. Fruit softening is an important agronomical trait that involves a complex interaction of plant cell processes. We have used both qualitative and quantitative scoring of fruit firmness, length, mass, and resistance to applied force to identify QTL in a raspberry mapping population. QTLs were located primarily on linkage group (LG) 3 with other significant loci on LG 1 and LG 5 and showed mostly additive effects between the two parents. The expression of key genes that underlie these QTLs with roles in cell-wall solubility, water uptake, polyamine synthesis, transcription, and cell respiration was tested across five stages of fruit development, from immature green to red ripe fruit, using real-time RT-qPCR. Gene expression patterns showed variable expression patterns across fruit development with a highly significant positive and negative correlation between genes, supporting precise regulation of expression of different cell processes throughout raspberry fruit development. Variable timing in expression was also found in some genes at different fruit development stages between soft and firm cultivars. Multiple processes have a role to play in fruit softening and this will require development of multiple marker combinations to genes that characterise raspberry fruit softening.

Evaluation of spot and passive sampling for monitoring, flux estimation and risk assessment of pesticides within the constraints of a typical regulatory monitoring scheme.

In many agricultural catchments of Europe and North America, pesticides occur at generally low concentrations with significant temporal variation. This poses several challenges for both monitoring and understanding ecological risks/impacts of these chemicals. This study aimed to compare the performance of passive and spot sampling strategies given the constraints of typical regulatory monitoring. Nine pesticides were investigated in a river currently undergoing regulatory monitoring (River Ugie, Scotland). Within this regulatory framework, spot and passive sampling were undertaken to understand spatiotemporal occurrence, mass loads and ecological risks. All the target pesticides were detected in water by both sampling strategies. Chlorotoluron was observed to be the dominant pesticide by both spot (maximum: 111.8ng/l, mean: 9.35ng/l) and passive sampling (maximum: 39.24ng/l, mean: 4.76ng/l). The annual pesticide loads were estimated to be 2735g and 1837g based on the spot and passive sampling data, respectively. The spatiotemporal trend suggested that agricultural activities were the primary source of the compounds with variability in loads explained in large by timing of pesticide applications and rainfall. The risk assessment showed chlorotoluron and chlorpyrifos posed the highest ecological risks with 23% of the chlorotoluron spot samples and 36% of the chlorpyrifos passive samples resulting in a Risk Quotient greater than 0.1. This suggests that mitigation measures might need to be taken to reduce the input of pesticides into the river. The overall comparison of the two sampling strategies supported the hypothesis that passive sampling tends to integrate the contaminants over a period of exposure and allows quantification of contamination at low concentration. The results suggested that within a regulatory monitoring context passive sampling was more suitable for flux estimation and risk assessment of trace contaminants which cannot be diagnosed by spot sampling and for determining if long-term average concentrations comply with specified standards.

Improving intercropping: a synthesis of research in agronomy, plant physiology and ecology.

Intercropping is a farming practice involving two or more crop species, or genotypes, growing together and coexisting for a time. On the fringes of modern intensive agriculture, intercropping is important in many subsistence or low-input/resource-limited agricultural systems. By allowing genuine yield gains without increased inputs, or greater stability of yield with decreased inputs, intercropping could be one route to delivering 'sustainable intensification'. We discuss how recent knowledge from agronomy, plant physiology and ecology can be combined with the aim of improving intercropping systems. Recent advances in agronomy and plant physiology include better understanding of the mechanisms of interactions between crop genotypes and species ­ for example, enhanced resource availability through niche complementarity. Ecological advances include better understanding of the context-dependency of interactions, the mechanisms behind disease and pest avoidance, the links between above- and below-ground systems, and the role of microtopographic variation in coexistence. This improved understanding can guide approaches for improving intercropping systems, including breeding crops for intercropping. Although such advances can help to improve intercropping systems, we suggest that other topics also need addressing. These include better assessment of the wider benefits of intercropping in terms of multiple ecosystem services, collaboration with agricultural engineering, and more effective interdisciplinary research.

Matching roots to their environment.

BACKGROUND: Plants form the base of the terrestrial food chain and provide medicines, fuel, fibre and industrial materials to humans. Vascular land plants rely on their roots to acquire the water and mineral elements necessary for their survival in nature or their yield and nutritional quality in agriculture. Major biogeochemical fluxes of all elements occur through plant roots, and the roots of agricultural crops have a significant role to play in soil sustainability, carbon sequestration, reducing emissions of greenhouse gasses, and in preventing the eutrophication of water bodies associated with the application of mineral fertilizers. SCOPE: This article provides the context for a Special Issue of Annals of Botany on 'Matching Roots to Their Environment'. It first examines how land plants and their roots evolved, describes how the ecology of roots and their rhizospheres contributes to the acquisition of soil resources, and discusses the influence of plant roots on biogeochemical cycles. It then describes the role of roots in overcoming the constraints to crop production imposed by hostile or infertile soils, illustrates root phenotypes that improve the acquisition of mineral elements and water, and discusses high-throughput methods to screen for these traits in the laboratory, glasshouse and field. Finally, it considers whether knowledge of adaptations improving the acquisition of resources in natural environments can be used to develop root systems for sustainable agriculture in the future.

Root hairs improve root penetration, root-soil contact, and phosphorus acquisition in soils of different strength.

Root hairs are a key trait for improving the acquisition of phosphorus (P) by plants. However, it is not known whether root hairs provide significant advantage for plant growth under combined soil stresses, particularly under conditions that are known to restrict root hair initiation or elongation (e.g. compacted or high-strength soils). To investigate this, the root growth and P uptake of root hair genotypes of barley, Hordeum vulgare L. (i.e. genotypes with and without root hairs), were assessed under combinations of P deficiency and high soil strength. Genotypes with root hairs were found to have an advantage for root penetration into high-strength layers relative to root hairless genotypes. In P-deficient soils, despite a 20% reduction in root hair length under high-strength conditions, genotypes with root hairs were also found to have an advantage for P uptake. However, in fertilized soils, root hairs conferred an advantage for P uptake in low-strength soil but not in high-strength soil. Improved root-soil contact, coupled with an increased supply of P to the root, may decrease the value of root hairs for P acquisition in high-strength, high-P soils. Nevertheless, this work demonstrates that root hairs are a valuable trait for plant growth and nutrient acquisition under combined soil stresses. Selecting plants with superior root hair traits is important for improving P uptake efficiency and hence the sustainability of agricultural systems.

The rheological properties of the seed coat mucilage of Capsella bursa-pastoris L. Medik. (shepherd's purse).

The outer surface of myxospermous seed coats contains mucilage which absorbs large amounts of water relative to its dry weight. Ecologically, the seed mucilage can affect seed germination and dormancy. Upon hydration, a large proportion of the seed mucilage is lost to the soil and the physics of soil-seed mucilage interactions has not been assessed. Towards that end, the dynamic rheological properties of mucilage extracted from Capsella bursa-pastoris L. Medik. (shepherd's purse) seeds were assessed as a function of mucilage concentration (1-10% [w/w]), temperature (0-80°C) and shear frequency (0.1-100 rad s-1). The seed mucilage was shear thinning and was classified as a highly viscous "weak gel". The relationship between the viscoelastic parameters (viscosity, η*, storage and loss modulus, G' and G″, yield and flow stresses, τy and τf) and mucilage concentration were well fitted by power law models. The values of η*, G' and G″ increased as temperature increased above 40°C and were also slightly frequency dependent. The shepherd's purse seed mucilage is more viscous than that from other plant parts, such as fruits and roots. These properties highlight the possibility that seed mucilage may affect soil conditions and therefore present an additional facilitative ecological role (beyond that already reported, which directly affect seed biology); and this is discussed.

Soil strength and macropore volume limit root elongation rates in many UK agricultural soils.

BACKGROUND AND AIMS: Simple indicators of crop and cultivar performance across a range of soil types and management are needed for designing and testing sustainable cropping practices. This paper determined the extent to which soil chemical and physical properties, particularly soil strength and pore-size distribution influences root elongation in a wide range of agricultural top soils, using a seedling-based indicator. METHODS: Intact soil cores were sampled from the topsoil of 59 agricultural fields in Scotland, representing a wide geographic spread, range of textures and management practices. Water release characteristics, dry bulk density and needle penetrometer resistance were measured on three cores from each field. Soil samples from the same locations were sieved, analysed for chemical characteristics, and packed to dry bulk density of 1.0 g cm(-3) to minimize physical constraints. Root elongation rates were determined for barley seedlings planted in both intact field and packed soil cores at a water content close to field capacity (-20 kPa matric potential). KEY RESULTS: Root elongation in field soil was typically less than half of that in packed soils. Penetrometer resistance was typically between 1 and 3 MPa for field soils, indicating the soils were relatively hard, despite their moderately wet condition (compared with <0.2 MPa for packed soil). Root elongation was strongly linked to differences in physical rather than chemical properties. In field soil root elongation was related most closely to the volume of soil pores between 60 µm and 300 µm equivalent diameter, as estimated from water-release characteristics, accounting for 65.7 % of the variation in the elongation rates. CONCLUSIONS: Root elongation rate in the majority of field soils was slower than half of the unimpeded (packed) rate. Such major reductions in root elongation rates will decrease rooting volumes and limit crop growth in soils where nutrients and water are scarce.

Characterization of a novel air-liquid interface biofilm of Pseudomonas fluorescens SBW25.

Pseudomonads are able to form a variety of biofilms that colonize the air-liquid (A-L) interface of static liquid microcosms, and differ in matrix composition, strength, resilience and degrees of attachment to the microcosm walls. From Pseudomonas fluorescens SBW25, mutants have evolved during prolonged adaptation-evolution experiments which produce robust biofilms of the physically cohesive class at the A-L interface, and which have been well characterized. In this study we describe a novel A-L interface biofilm produced by SBW25 that is categorized as a viscous mass (VM)-class biofilm. Several metals were found to induce this biofilm in static King's B microcosms, including copper, iron, lead and manganese, and we have used iron to allow further examination of this structure. Iron was demonstrated to induce SBW25 to express cellulose, which provided the matrix of the biofilm, a weak structure that was readily destroyed by physical disturbance. This was confirmed in situ by a low (0.023-0.047 g) maximum deformation mass and relatively poor attachment as measured by crystal violet staining. Biofilm strength increased with increasing iron concentration, in contrast to attachment levels, which decreased with increasing iron. Furthermore, iron added to mature biofilms significantly increased strength, suggesting that iron also promotes interactions between cellulose fibres that increase matrix interconnectivity. Whilst weak attachment is important in maintaining the biofilm at the A-L interface, surface-interaction effects involving cellulose, which reduced surface tension by approximately 3.8 mN m(-1), may also contribute towards this localization. The fragility and viscoelastic nature of the biofilm were confirmed by controlled-stress amplitude sweep tests to characterize critical rheological parameters, which included a shear modulus of 0.75 Pa, a zero shear viscosity of 0.24 Pa s(-1) and a flow point of 0.028 Pa. Growth and morphological data thus far support a non-specific metal-associated physiological, rather than mutational, origin for production of the SBW25 VM biofilm, which is an example of the versatility of bacteria to inhabit optimal niches within their environment.

Three-dimensional microorganization of the soil-root-microbe system.

Soils contain the greatest reservoir of biodiversity on Earth, and the functionality of the soil ecosystem sustains the rest of the terrestrial biosphere. This functionality results from complex interactions between biological and physical processes that are strongly modulated by the soil physical structure. Using a novel combination of biochemical and biophysical indicators and synchrotron microtomography, we have discovered that soil microbes and plant roots microengineer their habitats by changing the porosity and clustering properties (i.e., spatial correlation) of the soil pores. Our results indicate that biota act to significantly alter their habitat toward a more porous, ordered, and aggregated structure that has important consequences for functional properties, including transport processes. These observations support the hypothesis that the soil-plant-microbe complex is self-organized.