Tuning and Tracking of Coherent Shear Waves in Molecular Films.

We have determined the time-dependent displacement fields in molecular sub-micrometer thin films as response to femtosecond and picosecond laser pulse heating by time-resolved X-ray diffraction. This method allows a direct absolute determination of the molecular displacements induced by electron-phonon interactions, which are crucial for, for example, charge transport in organic electronic devices. We demonstrate that two different modes of coherent shear motion can be photoexcited in a thin film of organic molecules by careful tuning of the laser penetration depth relative to the thickness of the film. The measured response of the organic film to impulse heating is explained by a thermoelastic model and reveals the spatially resolved displacement in the film. Thereby, information about the profile of the energy deposition in the film as well as about the mechanical interaction with the substrate material is obtained.

Excited state kinetics of anthracene-bridge-aniline intramolecular exciplexes.

We report on the synthesis and characterization of fluorescent halogen substituted anthracene-bridge-aniline (ABA) supermolecules that undergo structural reorganization on photoexcitation to form transient complexes. The syntheses were achieved in high yields on a large scale and the molecular structures were confirmed by single crystal X-ray diffraction. The photophysics of the ABA supermolecules were investigated using steady state and time resolved optical spectroscopy. Despite the presence of heavy atoms the series of ABA molecules have high quantum yields of fluorescence from both a locally excited anthracene state (LE) and an excited state complex (exciplex, EP) in non-polar solvents. The kinetics of the excited state processes were established in decalin from the time-resolved emission, and was shown to be strongly influenced by an electron-transfer state (ET). For quantitative studies of the excited state dynamics, the presence of this state required the development of a numerical three-excited-state kinetic model to replace the commonly used two-excited-state model. The experimental results shows that the reaction rates are strongly influenced both by substituents and solvent, illustrating the importance of including all relevant states in the kinetic modeling. Ultimately it is established that the excited state dynamics can conveniently be followed by optical methods, and the applicability of the system as a model system in time-resolved X-ray scattering experiments is discussed.

Bond shortening (1.4 Å) in the singlet and triplet excited states of [Ir2(dimen)4]2+ in solution determined by time-resolved X-ray scattering.

Ground- and excited-state structures of the bimetallic, ligand-bridged compound Ir2(dimen)4(2+) are investigated in acetonitrile by means of time-resolved X-ray scattering. Following excitation by 2 ps laser pulses at 390 nm, analysis of difference scattering patterns obtained at eight different time delays from 250 ps to 300 ns yields a triplet excited-state distance between the two Ir atoms of 2.90(2) Å and a triplet excited-state lifetime of 410(70) ns. A model incorporating the presence of two ground-state structures differing in Ir­Ir separation is demonstrated to fit the obtained data very well, in agreement with previous spectroscopic investigations. Two ground-state isomers with Ir­Ir separations of 3.60(9) and 4.3(1) Å are found to contribute equally to the difference scattering signal at short time delays. Further studies demonstrate the feasibility of increasing the effective time resolution from the 100 ps probe width down to the 10 ps regime by positioning the laser pump pulse at selected points in the X-ray probe pulse. This approach is used to investigate the structures of both the singlet and the triplet excited states of Ir2(dimen)4(2+).

Columnar self-assembly and alignment of planar carbenium ions in Langmuir-Blodgett films.

Structural and optical properties of multilayer Langmuir-Blodgett (LB) films of two amphiphilic carbenium salts 2-didecylamino-6,10-bis(dimethylamino)-4,8,12-trioxatriangulenium hexafluorophosphate (ATOTA-1) and 2,6-bis(decylmethylamino)-10-dimethylamino-4,8,12-trioxatriangulenium hexafluorophosphate (ATOTA-2) are described. The LB films were prepared on lipophilic glass by standard vertical dipping. Grazing incidence X-ray diffraction (GIXD) measurements show that the planar organic cores, in spite of their positive charge, form closely packed columns with a repeating distance of ∼3.45 Å. Specular X-ray reflectivity (SXR) reveals the LB multilayers to consist of Y-type bilayers with thickness 31 Å for ATOTA-1 and 41 Å for ATOTA-2. This significant difference is ascribed to the different packing motifs of the alkyl chains in the two LB films. GIXD and polarized UV-vis absorption and emission spectroscopy show that the columnar aggregates in the LB films are oriented along the dipping direction. This alignment is attributed to shear effects during LB transfer. The main absorption band of the LB films is blue-shifted compared to that in solution, while the fluorescence is red-shifted by more than 100 nm. These findings suggest the presence of H-aggregates in agreement with the cofacial packing derived from the X-ray measurements. Polarized absorption spectroscopy with variable angle of incidence was used to resolve two perpendicular optical transitions in the visible range, one at 460 nm polarized perpendicular to the columnar direction, in the plane of the film, and one at 420 nm polarized along the film normal.

First step in chemical preparation of metal nanogaps bridged by thiol end-capped molecular wires.

We present a strategy for chemical preparation of multiple copies of single-molecule electronic devices that is based on chemical self-assembly under equilibrium conditions in aqueous solution. As a first step in the realization of this, we show that thiol end-capped oligo(phenylenevinylene)s (OPVs) can be rendered water-soluble by forming well-defined stoichiometric supramolecular complexes with α-cyclodextrins. On the basis of fluorescence intensity measurements in water, a 1:3 stoichiometry was determined for the complexes with equilibrium constants of the order of 5 × 10(-2) M(-2). The photophysical properties of the OPV3s as free molecules in solution, as nanoaggregates in aqueous suspension, and embedded in cyclodextrins in water, are reported, and the prospects of using these complexes as nucleation sites for growth of gold nanorods bridged by electronically active thiol end-capped molecules is discussed.

Structure of a short-lived excited state trinuclear Ag-Pt-Pt complex in aqueous solution by time resolved X-ray scattering.

The present communication describes the identification and structural characterization of a photo-induced transient trinuclear Ag-Pt-Pt complex, in which a pronounced internal structural change of the excited-state PtPOP moiety is observed upon complexation with the Ag ion.

Structural tracking of a bimolecular reaction in solution by time-resolved X-ray scattering.

Molecular movies: Time-resolved X-ray scattering provides direct structural information on an electronically excited complex while it is formed in the bimolecular reaction between excited octahydrogen[tetrakis-mu-diphosphito-1kappaP:2kappaP'-diplatinate](4-) (PtPOP*) and thallium ions. In the exciplex one thallium(I) and two platinum(II) ions are found to be collinear.

Close columnar packing of triangulenium ions in Langmuir films.

Three new tris(dialkylamino)trioxatriangulenium (ATOTA+) salts rendered amphiphilic by attachment of two (5a x PF6 and 5b x PF6) or four (5c x PF6) n-decyl chains have been synthesized, and their Langmuir films have been studied by grazing incidence X-ray diffraction (GIXD). Compounds 5a x PF6 and 5b x PF6 both self-assemble into 2D-crystalline Langmuir monolayers, in which the planar triangular shaped carbenium ions form columnar aggregates segregated from the PF6- ions. The column width is found to be close to the width of the triangulenium moiety itself (approximately 17 angstroms), while the repeat distance along the columnar aggregates is only 3.45 angstroms, implicating a near cofacial columnar structure with only a small tilt of the planar carbenium ions relative to the columnar axis. A detailed Bragg rod analysis confirmed an 8-9 degrees tilt and inferred a large anisotropy in the smearing/thermal displacement along the pi-pi stacking and lamellar packing directions. Specular X-ray reflectivity (SXR) was used to confirm the model derived from the GIXD data and elucidate the average position of the disordered PF6- ions, showing that the majority of the anions are accommodated in the ATOTA+ layer rather than in the water subphase.

Time-resolved X-ray scattering of an electronically excited state in solution. Structure of the 3A(2u) state of tetrakis-mu-pyrophosphitodiplatinate(II).

The structure of the (3)A(2u) excited state of tetrakis-mu-pyrophosphitodiplatinate(II) in aqueous solution is investigated by time-resolved X-ray scattering on a time scale from 100 ps to 1 micros after optical pumping. The primary structural parameter, the Pt-Pt distance, is found to be 2.74 A, which is 0.24 A shorter than the ground-state value. The contraction is in excellent agreement with earlier estimates based on spectroscopic data in solution and diffraction data in the crystalline state. As a second structural parameter, the distance between the P planes in the (3)A(2u) excited state was determined to be 2.93 A, i.e., the same as that in the ground state. This result implies that a slight lengthening of the Pt-P bond occurs following excitation.

Expanding the optical trapping range of gold nanoparticles.

We demonstrate stable three-dimensional (3D) single-beam optical trapping of gold nanoparticles with diameters between 18 and 254 nm. Three-dimensional power spectral analysis reveals that, for nanoparticles with diameters less than 100 nm, the trap stiffness is proportional to the volume of the particle. For larger particles, the trap stiffness still increases with size, however, less steeply. Finally, we provide numbers for the largest forces exertable on gold nanoparticles.

Multilabeled pyrene-functionalized 2'-amino-LNA probes for nucleic acid detection in homogeneous fluorescence assays.

Homogeneous fluorescence assays for detection of nucleic acids are widely used in biological sciences. Typically, probes such as molecular beacons that rely on distance-dependent fluorescence quenching are used for such assays. Less attention has been devoted to tethering a single kind of fluorophores to oligonucleotides and exploiting hybridization-induced modulation of fluorescence intensity for nucleic acid detection. Herein, thermal denaturation experiments and fluorescence properties of oligodeoxyribonucleotides containing one or more 2'-N-(pyren-1-yl)carbonyl-2'-amino-LNA monomer(s) X are described. These pyrene-functionalized 2'-amino-LNAs display large increases in thermal stability against DNA/RNA complements with excellent Watson-Crick mismatch discrimination. Upon duplex formation of appropriately designed 2'-N-(pyren-1-yl)carbonyl-2'-amino-LNA probes and complementary DNA/RNA, intensive fluorescence emission with quantum yields between 0.28 and 0.99 are observed. Quantum yields of such magnitudes are unprecedented among pyrene-labeled oligonucleotides. Molecular modeling studies suggest that the dioxabicyclo[2.2.1]heptane skeleton and amide linkage of monomer X fix the orientation of the pyrene moiety in the minor groove of a nucleic acid duplex. Interactions between pyrene and nucleobases, which typically lead to quenching of fluorescence, are thereby reduced. Duplexes between multiple modified probes and DNA/RNA complements exhibit additive increases in fluorescence intensity, while the fluorescence of single stranded probes becomes increasingly quenched. Up to 69-fold increase in fluorescence intensity (measured at lambda(em) = 383 nm) is observed upon hybridization to DNA/RNA. The emission from duplexes of multiple modified probes and DNA/RNA at concentrations down to less than 500 nM can easily be seen by the naked eye using standard illumination intensities.

2,6,10-Tris(dialkylamino)trioxatriangulenium salts: a new promising fluorophore. Ion-pair formation and aggregation in non-polar solvents.

The D3h symmetric tris(dialkylamino)trioxatriangulenium ((R2N)3TOTA+) ions are structurally related to classical stains and fluorophores such as triphenylmethane dyes and rhodamines. New derivatives of (R2N)3TOTA+, in which long flexible alkyl chains surround the planar and rigid aromatic core, have been synthesized and isolated as hexafluorophosphate salts. In contrast to short-chain derivatives of triphenylmethane dyes, the new compounds described here are soluble in hydrocarbon solvents. The photophysical properties of these carbenium salts are investigated. Characteristic alterations of the photophysical properties as a function of solvent polarity, concentration and temperature are observed. A model to rationalize the phenomena is presented comprising three states of aggregation, i.e. freely solvated ions, tight ion-pairs, and dimers of ion-pairs. Reduced symmetry in the tight ion-pairs is held responsible for the observed splitting of the long wavelength absorption band. Exciton coupling in the ion-pair dimers leads to reduced oscillator strength of the S0-S1 transition. The model is supported by semi-empirical calculations of the structures and electronic transitions of the free cation and its ion-pair(s).

Oligodeoxynucleotides containing alpha-L-ribo configured LNA-type C-aryl nucleotides.

Synthesis of 2[prime or minute]-O,4[prime or minute]-C-methylene-[small alpha]-l-ribofuranosyl derivatives containing phenyl and 1-pyrenyl aglycons, i.e., novel [small alpha]-l-ribo configured LNA-type C-aryl nucleosides, has been accomplished. Key synthetic steps included stereoselective Grignard reactions on tetrahydrofuran aldehyde, configurational inversion of the resulting alcohol into alcohol, and concomitant Mitsonobu cyclization furnishing the desired bicyclic furanosyl skeleton with a locked conformation. The phosphoramidite derivatives and were used for automated synthesis of 9-mer DNA and [small alpha]-L-LNA oligonucleotides containing the [small alpha]-L-LNA-type C-aryl monomers ([small alpha]L)Ph(L) and ([small alpha]L)Py(L) containing a phenyl and pyrenyl aglycon, respectively. Thermal denaturation studies showed universal base pairing behavior for the pyrenyl monomer ([small alpha]L)Py(L) when incorporated into a DNA or an [small alpha]-L-LNA oligonucleotide.

Intercalation of trioxatriangulenium ion in DNA: binding, electron transfer, x-ray crystallography, and electronic structure.

Trioxatriangulenium ion (TOTA(+)) is a flat, somewhat hydrophobic compound that has a low-energy unoccupied molecular orbital. It binds to duplex DNA by intercalation with a preference for G-C base pairs. Irradiation of intercalated TOTA(+) causes charge (radical cation) injection that results in strand cleavage (after piperidine treatment) primarily at GG steps. The X-ray crystal structure of TOTA(+) intercalated in the hexameric duplex d[CGATCG](2) described here reveals that intercalation of TOTA(+) results in an unusually large extension of the helical rise of the DNA and that the orientation of TOTA(+) is sensitive to hydrogen-bonding interactions with backbone atoms of the DNA. Electronic structure calculations reveal no meaningful charge transfer from DNA to TOTA(+) because the lowest unoccupied molecular orbital of TOTA(+), (LUMO)(T), falls in the gap between the highest occupied molecular orbital, (HOMO)(D), and the (LUMO)(D) of the DNA bases. These calculations reveal the importance of backbone, water, and counterion interactions, which shift the energy levels of the bases and the intercalated TOTA(+) orbitals significantly. The calculations also show that the inserted TOTA(+) strongly polarizes the intercalation cavity where a sheet of excess electron density surrounds the TOTA(+).

Novel synthesis of protected thiol end-capped stilbenes and oligo(phenylenevinylene)s (OPVs).

The first general procedures for preparation of thiol end-capped stilbenes and oligo(phenylenevinylene)s (OPVs) with tert-butyl- and acetyl-protected thiol termini have been developed. These reactions proceed via Br/Li exchange, McMurry, and Wittig-type reactions. The thiol functionality is protected against strong basic and acidic reaction conditions as a t-Bu sulfide. As a key point in the method, reprotection of the thiol group is accomplished by means of acetyl chloride and boron tribromide. The novel strategy forms the basis for stepwise introduction of 4-mercaptostyryl units in OPVs. The new mono-, di-, and trimercapto OPVs have potential applications as one, two, and three terminal molecular devices in gold nanoparticle clusters, self-assembled monolayers, and optoelectronic devices.

Photophysics of trioxatriangulenium ion. electrophilic reactivity in the ground state and excited singlet state.

Trioxatriangulenium (TOTA+. 4,8,12-trioxa-4,8,12,12c-tetrahydro-dibenzo[cd,mn]-pyrenylium) is a closed shell carbenium ion, which is stable in non-nucleophilic polar solvents at ambient temperatures In alcohols, small quantities of the leuco ether are formed in a reversible reaction. The physical and chemical properties of the excited singlet state of the trioxatriangulenium (TOTA+) carbenium ion are investigated by experimental and computational means The degeneracy of the lowest excited states is counteracted by Jahn-Teller-type distortion, which leads to vibronic broadening of the long wavelength absorption band. A strong fluorescence is observed at 520 nm (tau(fl) = 14.6 ns, phi(fl) = 0.12 in deaerated acetonitrile). The fluorescence is quenched by 10 aromatic electron donors predominantly via a dynamic charge transfer mechanism, but ground state complexation is shown to contribute in varying degrees Quenching is also observed in the presence of halide ions Quenching rate constants are derived from lifetime measurements while charge transfer (CT) complex formation constants follow from the steady-state Stern-Volmer plots. CT-complex formation with three discogenic triphenylenes is studied separately. Phosphorescence spectra, triplet lifetimes. and triplet-triplet absorption spectra are provided. In the discussion, TOTA+ is compared to the unsubstituted xanthenium ion and its 9-phenyl derivative with respect to the excited state properties.

Synthesis of New Sulfur Heteroaromatics Isoelectronic with Dibenzo[g,p]chrysene by Photocyclization of Thienyl- and Phenyl-Substituted Ethenes.

A series of new sulfur heteroarenes, isoelectronic with dibenzo[g,p]chrysene, have been prepared by double photocyclization of the corresponding tetraaryl substituted ethenes. The first step proceeds efficiently in each case, and the corresponding intermediate sulfur heteroarenes, isoelectronic with phenanthrene, have been isolated. The second ring closure is only efficient when one of the participating aryl substituents is thienyl, which thus manifests a higher electron density on the carbon atom involved in the excited singlet state reaction. Most of the new compounds are of minimal solubility in common solvents and do not display improved electron donor properties otherwise commonly found among heteroaromatics.