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1.
Arch Biochem Biophys ; 483(1): 136-43, 2009 Mar 01.
Artigo em Inglês | MEDLINE | ID: mdl-19138656

RESUMO

Following a shift to medium with acetate as the carbon source, a parental yeast strain exhibited a transient moderate 20% reduction in total cellular [NAD(+)+NADH] but showed a approximately 10-fold increase in the ratio of [NAD(+)]:[NADH] after 36h. A mutant strain (idhDelta) lacking the tricarboxylic acid cycle enzyme isocitrate dehydrogenase had 50% higher cellular levels of [NAD(+)+NADH] relative to the parental strain but exhibited similar changes in cofactor concentrations following a shift to acetate medium, despite an inability to grow on that carbon source; essentially all of the cofactor was in the oxidized form within 36h. The salvage pathway for NAD(H) biosynthesis was found to be particularly important for viability during early transition of the parental strain to stationary phase in acetate medium. However, oxygen consumption was not affected, suggesting that the NAD(H) produced during this time may support other cellular functions. The idhDelta mutant exhibited increased flux through the salvage pathway in acetate medium but was dependent on the de novo pathway for viability. Long-term chronological lifespans of the parental and idhDelta strains were similar, but viability of the mutant strain was dependent on both pathways for NAD(H) biosynthesis.


Assuntos
Ácido Acético/metabolismo , Saccharomyces cerevisiae/metabolismo , Carbono/metabolismo , Ciclo do Ácido Cítrico , Meios de Cultura , Genes Fúngicos , Glucose/metabolismo , Isocitrato Desidrogenase/genética , Isocitrato Desidrogenase/metabolismo , Mutação , NAD/metabolismo , Nicotinamidase/genética , Nicotinamidase/metabolismo , Oxirredução , Consumo de Oxigênio , Pentosiltransferases/genética , Pentosiltransferases/metabolismo , Saccharomyces cerevisiae/genética , Saccharomyces cerevisiae/crescimento & desenvolvimento , Proteínas de Saccharomyces cerevisiae/genética , Proteínas de Saccharomyces cerevisiae/metabolismo , Fatores de Tempo
2.
Acta Biol Hung ; 58 Suppl: 81-94, 2007.
Artigo em Inglês | MEDLINE | ID: mdl-18297796

RESUMO

The passage of highly specialized germ cells to future generations is essential for the maintenance of species. To date, conventional genetic screens identified relatively few genes that are involved in germ cell development. We aimed to identify germ line specific genes on the X chromosome of Drosophila melanogaster by the application of a new method: the dual-tagging gene-trap system (GT). A modified version of the gene-trap element was used in our experiments and the resulting insertional mutants were screened for grandchild-less phenotype with the help of the attached-X system and a sensitized genetic background developed in our laboratory. Among the 800 insertions mapped to the X chromosome 33 new mutations were identified that exhibited grandchild-less phenotype, 6 gave visible phenotype and 12 were conditional lethal. The cloning of a selected group of the 33 lines showing grandchild-less phenotype confirmed that we have identified new candidates for genes involved in germ cell development. One of them named pebbled (peb) is discussed in details in this paper. Finally, we also describe a novel automatic selection system developed in our laboratory which enables the extension of the GT mutagenesis to the autosomes.


Assuntos
Automação , Drosophila melanogaster/embriologia , Marcadores Genéticos , Células Germinativas/citologia , Animais , Sequência de Bases , Primers do DNA , Mutagênese , Reação em Cadeia da Polimerase , Cromossomo X
3.
Biochemistry ; 41(22): 7065-73, 2002 Jun 04.
Artigo em Inglês | MEDLINE | ID: mdl-12033940

RESUMO

Yeast mitochondrial NAD+-specific isocitrate dehydrogenase (IDH) has previously been shown to bind specifically to 5'-untranslated regions of yeast mitochondrial mRNAs, and transcripts containing these regions have been found to allosterically inhibit activity of the enzyme. This inhibition is relieved by AMP, an allosteric activator of this regulatory enzyme of the tricarboxylic acid cycle. We further investigated these enzyme/ligand interactions to determine if binding of RNA and AMP by IDH is competitive or independent. Gel mobility shift experiments indicated no effect of AMP on formation of an IDH/RNA complex. Similarly, sedimentation velocity ultracentrifugation experiments used to analyze interactions in solution indicated that AMP alone had little effect on the formation or stability of an RNA/IDH complex. However, when these sedimentation experiments were conducted in the presence of isocitrate, which has been shown to be essential for binding of AMP by IDH, the proportion of RNA sedimenting in a complex with IDH was significantly reduced by AMP. These results suggest that AMP can affect the binding of RNA by IDH but that this effect is apparent only in the presence of substrate. They also suggest that the catalytic activity of IDH in vivo may be subject to complex allosteric control determined by relative mitochondrial concentrations of mRNA, isocitrate, and AMP. We also found evidence for binding of 5'-untranslated regions of mitochondrial mRNAs by yeast mitochondrial NADP+-specific isocitrate dehydrogenase (IDP1) but not by the corresponding cytosolic isozyme (IDP2). However, this appears to be a nonspecific interaction since no evidence was obtained for any effect on the catalytic activity of IDP1.


Assuntos
Regiões 5' não Traduzidas/metabolismo , Monofosfato de Adenosina/metabolismo , Isocitrato Desidrogenase/metabolismo , Isocitratos/metabolismo , Regulação Alostérica , Ligação Competitiva/fisiologia , Citosol/química , Ensaio de Desvio de Mobilidade Eletroforética/métodos , Ativação Enzimática , Substâncias Macromoleculares , Mitocôndrias/química , RNA Mensageiro/metabolismo , Proteínas de Ligação a RNA/metabolismo , Ultracentrifugação/métodos , Leveduras/enzimologia
4.
Biochemistry ; 40(47): 14291-301, 2001 Nov 27.
Artigo em Inglês | MEDLINE | ID: mdl-11714283

RESUMO

Yeast NAD(+)-specific isocitrate dehydrogenase is an allosterically regulated octameric enzyme composed of four each of two homologous but nonidentical subunits designated IDH1 and IDH2. Models based on the crystallographic structure of Escherichia coli isocitrate dehydrogenase suggest that both yeast subunits contain isocitrate-binding sites. Identities in nine residue positions are predicted for the IDH2 site whereas four of the nine positions differ between the IDH1 and bacterial enzyme sites. Thus, we speculate that the IDH2 site is catalytic and that the IDH1 site may bind but not catalytically alter isocitrate. This was examined by kinetic analyses of enzymes with independent and concerted replacement of residues in each yeast IDH subunit site with the residues that differ in the other subunit site. Mutant enzymes were expressed in a yeast strain containing disrupted IDH1 and IDH2 loci and affinity-purified for kinetic analyses. The primary effects of various residue replacements in IDH2 were reductions of 30->300-fold in V(max) values, consistent with the catalytic function of this subunit. In contrast, replacement of all four residues in IDH1 produced a 17-fold reduction in V(max) under the same assay conditions, suggesting that the IDH1 site is not the primary catalytic site. However, single or multiple residue replacements in IDH1 uniformly increased half-saturation concentrations for isocitrate, implying that isocitrate can be bound at this site. Both subunits appear to contribute to cooperativity with respect to isocitrate, but AMP activation is lost only with residue replacements in IDH1. Overall, results are consistent with isocitrate binding by IDH2 for catalysis and with isocitrate binding by IDH1 being a prerequisite for allosteric activation by AMP. The effects of residue substitutions on enzyme function in vivo were assessed by analysis of various growth phenotypes. Results indicate a positive correlation between the level of IDH catalytic activity and the ability of cells to grow with acetate or glycerol as carbon sources. In addition, lower levels of activity are associated with increased production of respiratory-deficient (petite) segregants.


Assuntos
Isocitrato Desidrogenase/metabolismo , Saccharomyces cerevisiae/enzimologia , Regulação Alostérica , Sequência de Aminoácidos , Domínio Catalítico , Proteínas Fúngicas/genética , Proteínas Fúngicas/metabolismo , Regulação Enzimológica da Expressão Gênica , Isocitrato Desidrogenase/genética , Isocitratos/metabolismo , Cinética , Modelos Químicos , Dados de Sequência Molecular , Mutação , Fenótipo , Proteínas Recombinantes , Homologia de Sequência de Aminoácidos
5.
Free Radic Biol Med ; 31(6): 832-43, 2001 Sep 15.
Artigo em Inglês | MEDLINE | ID: mdl-11557322

RESUMO

The relative antioxidant functions of thiol-dependent mechanisms and of direct catalytic inactivation of H2O2 were examined using a collection of yeast mutants containing disruptions in single or multiple genes encoding two major enzymatic sources of NADPH [glucose-6-phosphate dehydrogenase (ZWF1) and cytosolic NADP+-specific isocitrate dehydrogenase (IDP2)] and in genes encoding two major cellular peroxidases [mitochondrial cytochrome c peroxidase (CCP1) and cytosolic catalase (CTT1)]. Both types of mechanisms were found to be important for growth in the presence of exogenous H2O2. In the absence of exogenous oxidants, however, loss of ZWF1 and IDP2, but not loss of CTT1 and CCP1, was found to be detrimental not only to growth but also to viability of cells shifted to rich medium containing oleate or acetate. The loss in viability correlates with increased levels of intracellular oxidants apparently produced during normal metabolism of these carbon sources. Acute effects in DeltaZWF1DeltaIDP2 mutants following shifts to these nonpermissive media include an increase in the number of cells demonstrating a transient decrease in growth rate and in cells containing apparent nuclear DNA strand breaks. Cumulative effects are reflected in phenotypes, including sensitivity to acetate medium and a reduction in mating efficiency, that become more pronounced with time following disruption of the ZWF1 and IDP2 genes. These results suggest that cellular mechanisms dependent on NADPH are crucial metabolic antioxidants.


Assuntos
Antioxidantes/metabolismo , Citosol/enzimologia , NADP/metabolismo , Saccharomyces cerevisiae/enzimologia , Catalase/genética , Catalase/metabolismo , Sobrevivência Celular , Citocromo-c Peroxidase/genética , Citocromo-c Peroxidase/metabolismo , Glucosefosfato Desidrogenase/genética , Glucosefosfato Desidrogenase/metabolismo , Peróxido de Hidrogênio/metabolismo , Peróxido de Hidrogênio/farmacologia , Isocitrato Desidrogenase/genética , Isocitrato Desidrogenase/metabolismo , Mitocôndrias/enzimologia , Mutagênese , Oxidantes/análise , Estresse Oxidativo , Fenótipo , Saccharomyces cerevisiae/genética , Saccharomyces cerevisiae/ultraestrutura , Compostos de Sulfidrila/farmacologia , Fatores de Tempo
6.
J Biol Chem ; 276(2): 1204-10, 2001 Jan 12.
Artigo em Inglês | MEDLINE | ID: mdl-11042198

RESUMO

Yeast mitochondrial NAD(+)-specific isocitrate dehydrogenase is an octamer composed of four each of two nonidentical but related subunits designated IDH1 and IDH2. IDH2 was previously shown to contain the catalytic site, whereas IDH1 contributes regulatory properties including cooperativity with respect to isocitrate and allosteric activation by AMP. In this study, interactions between IDH1 and IDH2 were detected using the yeast two-hybrid system, but interactions between identical subunit polypeptides were not detected with this or other methods. A model for heterodimeric interactions between the subunits is therefore proposed for this enzyme. A corollary of this model, based on the three-dimensional structure of the homologous enzyme from Escherichia coli, is that some interactions between subunits occur at isocitrate binding sites. Based on this model, two residues (Lys-183 and Asp-217) in the regulatory IDH1 subunit were predicted to be important in the catalytic site of IDH2. We found that individually replacing these residues with alanine results in mutant enzymes that exhibit a drastic reduction in catalysis both in vitro and in vivo. Also based on this model, the two analogous residues (Lys-189 and Asp-222) of the catalytic IDH2 subunit were predicted to contribute to the regulatory site of IDH1. A K189A substitution in IDH2 was found to produce a decrease in activation of the enzyme by AMP and a loss of cooperativity with respect to isocitrate. A D222A substitution in IDH2 produces similar regulatory defects and a substantial reduction in V(max) in the absence of AMP. Collectively, these results suggest that the basic structural/functional unit of yeast isocitrate dehydrogenase is a heterodimer of IDH1 and IDH2 subunits and that each subunit contributes to the isocitrate binding site of the other.


Assuntos
Isocitrato Desidrogenase/química , Isocitrato Desidrogenase/metabolismo , Mitocôndrias/enzimologia , Saccharomyces cerevisiae/enzimologia , Regulação Alostérica , Sequência de Aminoácidos , Sítios de Ligação , Escherichia coli/enzimologia , Genes Reporter , Isocitrato Desidrogenase/genética , Cinética , Magnésio/metabolismo , Dados de Sequência Molecular , Mutagênese Sítio-Dirigida , Subunidades Proteicas , Proteínas Recombinantes/química , Proteínas Recombinantes/metabolismo , Saccharomyces cerevisiae/genética , Saccharomyces cerevisiae/crescimento & desenvolvimento , Alinhamento de Sequência , Homologia de Sequência de Aminoácidos
7.
J. pneumol ; 26(5): 269-272, set.-out. 2000. ilus
Artigo em Português | LILACS | ID: lil-339118

RESUMO

É relatado o caso de um paciente portador da síndrome de Pancoast associada à síndrome da imunodeficiência adquirida. Esta apresentação é rara, visto que os tumores mais freqüentemente associados à SIDA são o sarcoma de Kaposi e o linfoma não-Hodgkin. O paciente, com passado de uso de drogas injetáveis, internou-se para investigação de massa em ápice pulmonar, com presença de síndrome de Pancoast, sendo solicitado anti-HIV, com resultado positivo, e tendo sido feito diagnóstico de Ca brônquico não-pequenas células


Assuntos
Humanos , Masculino , Adulto , Carcinoma Broncogênico/complicações , Síndrome da Imunodeficiência Adquirida/complicações , Síndrome de Pancoast/complicações , Carcinoma Broncogênico/diagnóstico , Síndrome da Imunodeficiência Adquirida/diagnóstico , Síndrome de Pancoast/diagnóstico
8.
Biochemistry ; 39(19): 5623-9, 2000 May 16.
Artigo em Inglês | MEDLINE | ID: mdl-10801312

RESUMO

NAD+-specific isocitrate dehydrogenase (IDH) has been reported to bind sequences in 5'-untranslated regions of yeast mitochondrial mRNAs. In the current study, an RNA transcript containing the 5'-untranslated region of the mRNA from the yeast mitochondrial COX2 gene is shown to be an allosteric inhibitor of the affinity-purified yeast enzyme. At 0.1 microM concentrations of the transcript, velocity of the IDH reaction is reduced to 20% of the value obtained in the absence of the RNA transcript. This inhibition is due to a 2. 5-fold increase in the S0.5 value for isocitrate. Significant inhibition of IDH activity is also obtained with a transcript containing a portion of the 5'-untranslated region of the yeast mitochondrial ATP9 gene and with an antisense form of the COX2 transcript, both of which contain potential stem-loop secondary structures implicated in binding of IDH. In contrast, much higher concentrations of yeast tRNA or poly(A)mRNA, respectively, 33- and 60-fold greater than that required for the COX2 transcript, are required to produce a 50% decrease in velocity. These results suggest that inhibition of activity is relatively specific for the 5'-untranslated regions of mitochondrial mRNAs. All measurable inhibition of IDH activity by RNA is eliminated by addition of 100 microM concentrations of the allosteric activator AMP. At equivalent concentrations, dAMP is less efficient than AMP as an allosteric activator of IDH and is proportionally less effective in protecting against inhibition of activity by the COX2 transcript. Other nucleotides that are not allosteric activators fail to protect IDH activity from inhibitory effects of RNA. Thus, alleviation of catalytic inhibition of IDH by mitochondrial mRNA correlates with the property of allosteric activation.


Assuntos
Inibidores Enzimáticos/química , Isocitrato Desidrogenase/antagonistas & inibidores , NAD/química , RNA Fúngico/química , RNA Mensageiro/química , RNA/química , Regiões 5' não Traduzidas/química , Monofosfato de Adenosina/química , Regulação Alostérica , Sequência de Bases , Complexo IV da Cadeia de Transporte de Elétrons/química , Ativação Enzimática , Isocitrato Desidrogenase/metabolismo , Cinética , Dados de Sequência Molecular , RNA Mitocondrial , Saccharomyces cerevisiae/enzimologia , Especificidade por Substrato
9.
Methods ; 19(2): 330-7, 1999 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-10527735

RESUMO

In recent years, the yeast two-hybrid system has become the method of choice for detection and analysis of protein-protein interactions in an in vivo context. This system, which capitalizes on the significant genetic history and ease of protocols for manipulation of Saccharomyces cerevisiae, is accessible to most laboratories and is applicable to the pursuit of a large variety of experimental goals. To date, the two-hybrid system has seen widespread application for identification of interaction partners by screening methods using a particular protein of interest as a "bait." Large-scale ventures are also in progress, for example, a cataloging of interactions among the cellular proteins in yeast. However, this method also has tremendous potential for more focused analyses of specific proteins and should become more routine as an alternative or adjunct approach for many structure-function investigations.


Assuntos
Clonagem Molecular/métodos , Proteínas/química , Proteínas/metabolismo , Saccharomyces cerevisiae/genética , Proteínas Fúngicas/química , Proteínas Fúngicas/genética , Proteínas Fúngicas/metabolismo , Genes Fúngicos , Mutagênese , Reação em Cadeia da Polimerase/métodos , Regiões Promotoras Genéticas , Proteínas Recombinantes de Fusão/química , Proteínas Recombinantes de Fusão/metabolismo
10.
Mem Inst Oswaldo Cruz ; 94(3): 377-81, 1999.
Artigo em Inglês | MEDLINE | ID: mdl-10348986

RESUMO

The objective of this study is to determine the different characteristics of human immunodeficiency virus (HIV) positive and negative patients treated for tuberculosis (TBC) in a tertiary hospital in Southern Brazil. We conducted a retrospective cohort study over a 5-year period, from January 1992 through December 1996. We reviewed medical charts of patients from our institution who received TBC treatment. We reviewed 167 medical charts of patients with confirmed TBC. HIV positivity was detected in 74 patients. There were statistically significant difference between HIV positive and negative patients in sex and age. HIV-infected patients showed significantly more signs of bacteremia than HIV-negative patients. Extra-pulmonary TBC was present respectively in 13 (17.6%) and 21 (22.6%) HIV positive and negative patients. There was a significant difference between chest radiograph presentation in HIV positive and negative patients. There were significantly lower hematocrit, hemoglobin, leukocyte and lymphocyte levels in HIV-positive compared to HIV-negative patients. Outcome was significantly different in the two groups with a death rate of 36.5% and 10.8% in HIV-positive and in HIV-negative patients. The difference between HIV positive and negative patients may have importance in the diagnosis, management and prognosis of patients with TBC.


Assuntos
Soronegatividade para HIV , Soropositividade para HIV/complicações , Tuberculose/complicações , Adulto , Brasil , Estudos de Coortes , Feminino , Hematócrito , Hemoglobinas/análise , Humanos , Contagem de Leucócitos , Contagem de Linfócitos , Masculino , Prognóstico , Estudos Retrospectivos , Fatores de Risco , Falha de Tratamento , Tuberculose/sangue , Tuberculose/diagnóstico , Tuberculose/terapia
11.
J Biol Chem ; 274(6): 3402-6, 1999 Feb 05.
Artigo em Inglês | MEDLINE | ID: mdl-9920883

RESUMO

Growth of Saccharomyces cerevisiae with a fatty acid as carbon source was shown previously to require function of either glucose-6-phosphate dehydrogenase (ZWF1) or cytosolic NADP+-specific isocitrate dehydrogenase (IDP2), suggesting dependence of beta-oxidation on a cytosolic source of NADPH. In this study, we find that DeltaIDP2DeltaZWF1 strains containing disruptions in genes encoding both enzymes exhibit a rapid loss of viability when transferred to medium containing oleate as the carbon source. This loss of viability is not observed following transfer of a DeltaIDP3 strain lacking peroxisomal isocitrate dehydrogenase to medium with docosahexaenoate, a nonpermissive carbon source that requires function of IDP3 for beta-oxidation. This suggests that the fatty acid- phenotype of DeltaIDP2DeltaZWF1 strains is not a simple defect in utilization. Instead, we propose that the common function shared by IDP2 and ZWF1 is maintenance of significant levels of NADPH for enzymatic removal of the hydrogen peroxide generated in the first step of peroxisomal beta-oxidation in yeast and that inadequate levels of the reduced form of the cofactor can produce lethality. This proposal is supported by the finding that the sensitivity to exogenous hydrogen peroxide previously reported for DeltaZWF1 mutant strains is less pronounced when analyses are conducted with a nonfermentable carbon source, a condition associated with elevated expression of IDP2. Under those conditions, similar slow growth phenotypes are observed for DeltaZWF1 and DeltaIDP2 strains, and co-disruption of both genes dramatically exacerbates the H2O2s phenotype. Collectively, these results suggest that IDP2, when expressed, and ZWF1 have critical overlapping functions in provision of reducing equivalents for defense against endogenous or exogenous sources of H2O2.


Assuntos
Citosol/metabolismo , Microcorpos/metabolismo , NADP/metabolismo , Ácidos Graxos/metabolismo , Oxirredução , Saccharomyces cerevisiae/crescimento & desenvolvimento , Saccharomyces cerevisiae/metabolismo
12.
J Biol Chem ; 273(47): 31486-93, 1998 Nov 20.
Artigo em Inglês | MEDLINE | ID: mdl-9813062

RESUMO

To compare roles of specific enzymes in supply of NADPH for cellular biosynthesis, collections of yeast mutants were constructed by gene disruptions and matings. These mutants include haploid strains containing all possible combinations of deletions in yeast genes encoding three differentially compartmentalized isozymes of NADP+-specific isocitrate dehydrogenase and in the gene encoding glucose-6-phosphate dehydrogenase (Zwf1p). Growth phenotype analyses of the mutants indicate that either cytosolic NADP+-specific isocitrate dehydrogenase (Idp2p) or the hexose monophosphate shunt is essential for growth with fatty acids as carbon sources and for sporulation of diploid strains, a condition associated with high levels of fatty acid synthesis. No new biosynthetic roles were identified for mitochondrial (Idp1p) or peroxisomal (Idp3p) NADP+-specific isocitrate dehydrogenase isozymes. These and other results suggest that several major presumed sources of biosynthetic reducing equivalents are non-essential in yeast cells grown under many cultivation conditions. To develop an in vivo system for analysis of metabolic function, mammalian mitochondrial and cytosolic isozymes of NADP+-specific isocitrate dehydrogenase were expressed in yeast using promoters from the cognate yeast genes. The mammalian mitochondrial isozyme was found to be imported efficiently into yeast mitochondria when fused to the Idp1p targeting sequence and to substitute functionally for Idp1p for production of alpha-ketoglutarate. The mammalian cytosolic isozyme was found to partition between cytosolic and organellar compartments and to replace functionally Idp2p for production of alpha-ketoglutarate or for growth on fatty acids in a mutant lacking Zwf1p. The mammalian cytosolic isozyme also functionally substitutes for Idp3p allowing growth on petroselinic acid as a carbon source, suggesting partial localization to peroxisomes and provision of NADPH for beta-oxidation of that fatty acid.


Assuntos
Isocitrato Desidrogenase/metabolismo , Mitocôndrias/enzimologia , NADP/metabolismo , Saccharomyces cerevisiae/fisiologia , Animais , Transporte Biológico , Compartimento Celular , Expressão Gênica , Genes Fúngicos , Teste de Complementação Genética , Glucosefosfato Desidrogenase/metabolismo , Isocitrato Desidrogenase/genética , Isoenzimas/metabolismo , Microcorpos/enzimologia , Mutação , Via de Pentose Fosfato , Reprodução , Mapeamento por Restrição , Esporos Fúngicos , Suínos
13.
J Bacteriol ; 180(16): 4051-5, 1998 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-9696750

RESUMO

The reoxidation of NADH generated in reactions within the mitochondrial matrix of Saccharomyces cerevisiae is catalyzed by an NADH dehydrogenase designated Ndi1p (C. A. M. Marres, S. de Vries, and L. A. Grivell, Eur. J. Biochem. 195:857-862, 1991). Gene disruption analysis was used to examine possible metabolic functions of two proteins encoded by open reading frames having significant primary sequence similarity to Ndi1p. Disruption of the gene designated NDH1 results in a threefold reduction in total mitochondrial NADH dehydrogenase activity in cells cultivated with glucose and in a fourfold reduction in the respiration of isolated mitochondria with NADH as the substrate. Thus, Ndh1p appears to be a mitochondrial dehydrogenase capable of using exogenous NADH. Disruption of a closely related gene designated NDH2 has no effect on these properties. Growth phenotype analyses suggest that the external NADH dehydrogenase activity of Ndh1p is important for optimum cellular growth with a number of nonfermentable carbon sources, including ethanol. Codisruption of NDH1 and genes encoding malate dehydrogenases essentially eliminates growth on nonfermentable carbon sources, suggesting that the external mitochondrial NADH dehydrogenase and the malate-aspartate shuttle may both contribute to reoxidation of cytosolic NADH under these growth conditions.


Assuntos
Mitocôndrias/enzimologia , NADH Desidrogenase/metabolismo , Saccharomyces cerevisiae/enzimologia , Sequência de Aminoácidos , Citosol/enzimologia , Genes Fúngicos , Malato Desidrogenase/genética , Malato Desidrogenase/metabolismo , Mitocôndrias/genética , Dados de Sequência Molecular , NADH Desidrogenase/genética , NADH Desidrogenase/isolamento & purificação , Fenótipo , Saccharomyces cerevisiae/genética , Alinhamento de Sequência , Homologia de Sequência de Aminoácidos
14.
Rev Assoc Med Bras (1992) ; 44(2): 146-8, 1998.
Artigo em Português | MEDLINE | ID: mdl-9699334

RESUMO

PURPOSE: Describe the case of a man, tabagist, with a nodule in right lung that showed malignant characteristics detected by routine chest radiographs, whose histopathological diagnosis was benign intercostal schwannoma. METHOD: The authors reviewed the clinical features, chest radiographs and computer tomographies of the case, and the histological and immunohistochemical aspects of the surgical specimen. RESULTS: The patient was submitted to diagnostic right thoracotomy with resection of the tumor. The conventional histopathological exam showed spindle shaped cells in a--palisading fashion, forming the Verocay's bodies, characteristics of schwannomas. The immunohistochemical was positive to S-100 protein, vimentin and enolases, and negative to neurofilament proteins. CONCLUSION: The definitive diagnosis of schwannoma is possible only after histopathological and immunohistochemical examination of the tumor. Its cellularity associated with mitotic count and pleomorphism may lead to a mistaken diagnosis of malignant neoplasm. The immunohistochemistry by S-100 protein can characterize the benignity of the lesion, so that this protein is not found in the malignant cells. The intercostal schwannomas of the thoracic wall can mimic pulmonary neoplasm in chest radiographs and computer tomographies.


Assuntos
Neoplasias Pulmonares/diagnóstico , Neurilemoma/diagnóstico , Neoplasias do Sistema Nervoso Periférico/diagnóstico , Diagnóstico Diferencial , Humanos , Neoplasias Pulmonares/cirurgia , Masculino , Pessoa de Meia-Idade , Neurilemoma/cirurgia , Neoplasias do Sistema Nervoso Periférico/cirurgia
15.
Rev. Assoc. Med. Bras. (1992, Impr.) ; 44(2): 146-8, abr.-jun. 1998. ilus
Artigo em Português | LILACS | ID: lil-212845

RESUMO

Schwannoma é uma neoplasia mesenquimal, usualmente solitária, encontrada no mediastino, retroperitônio ou pelve, sendo rara sua apresentaçao na parede torácica. Objetivo. Relatar o caso de um paciente masculino, tabagista, com um nódulo pulmonar direito com características de malignidade, detectado em radiografia de tórax de rotina, cujo diagnóstico anatomopatológico foi de schwannoma benigno de nervo intercostal. Métodos. Revisaram-se os dados referentes ao quadro clínico, exames laboratoriais de imagem (radiografia e tomografia computadorizada de tórax) do caso em estudo, assim como os exames anatomopatológico e imuno-histoquímico do espécime cirúrgico. Resultados. O paciente foi submetido à toracotomia direita diagnóstica com ressecçao da tumoraçao. O exame anatomopatológico convencional mostrou células tumorais de aspecto fusiforme, dispostas em pacientes, formando os corpos de Verocay, compatível com schwannoma intercostal. A imuno-histoquímica foi positiva para proteína S-100, vimentina e enolase, e negativa para neurofilamentos. Conclusao. O diagnóstico definitivo de schwannoma só é imuno-histoquímica da lesao. Seu aspecto celular, associado à atividade mitótica e a áreas de pleomorfismo, pode levar ao diagnóstico incorreto de malignidade. A imuno-histoquímica, por meio da proteína S-100, é útil na caracterizaçao da benegnidade da lesao, já que nao é detectada nas lesoes malignas. Os schwannomas de parte torácica podem simular neoplasias pulmonares na radiografia e tomografia computadorizada de tórax.


Assuntos
Humanos , Masculino , Pessoa de Meia-Idade , Neoplasias do Sistema Nervoso Periférico/diagnóstico , Neurilemoma/diagnóstico , Neoplasias do Sistema Nervoso Periférico/cirurgia , Neurilemoma/cirurgia
17.
Biochemistry ; 36(44): 13743-7, 1997 Nov 04.
Artigo em Inglês | MEDLINE | ID: mdl-9354646

RESUMO

Rat liver cytosolic NADP+-specific isocitrate dehydrogenase (IDP2) was expressed in bacteria as a fusion protein with maltose binding protein (MBP). High levels of expression were obtained. The fusion protein was purified from bacterial lysates by affinity chromatography with an amylose resin and found to be catalytically active. IDP2 was separated from MBP by cleavage with protease Xa and purified to homogeneity by FPLC anion-exchange chromatography. A specific activity of 56.3 units/mg and respective apparent Km values for dl-isocitrate and NADP+ of 9.7 +/- 2.9 microM and 11.5 +/- 0.2 microM were obtained for the purified enzyme. These values are similar to those previously reported for cytosolic isocitrate dehydrogenase isolated from a variety of tissues. Evolutionarily conserved arginine residues implicated in substrate binding were changed to glutamate residues using PCR based site-directed mutagenesis of the bacterial fusion plasmid. Mutant enzymes containing residue changes of R100E, R109E, R119E, or R132E were expressed, purified, and characterized by initial rate kinetic analyses. The R119E and R109E mutant enzymes exhibited respective 15- and 31-fold increases in Km values for dl-isocitrate relative to the wild-type enzyme. In contrast, Km values for NADP+ were, respectively, unchanged and increased 9-fold. The most significant reductions in kcat/Km values were obtained for the R100E, R109E, and R132E enzymes. These results suggest that substrate binding residues are highly conserved between bacterial and mammalian enzymes despite low overall homology.


Assuntos
Citosol/enzimologia , Regulação Enzimológica da Expressão Gênica , Isocitrato Desidrogenase/biossíntese , Isocitrato Desidrogenase/genética , Mutagênese Sítio-Dirigida , Sequência de Aminoácidos , Animais , Proteínas de Bactérias/biossíntese , Proteínas de Bactérias/genética , Proteínas de Bactérias/isolamento & purificação , Escherichia coli/enzimologia , Escherichia coli/genética , Isocitrato Desidrogenase/isolamento & purificação , Cinética , Fígado/enzimologia , Dados de Sequência Molecular , NADP/metabolismo , Plasmídeos , Ratos , Proteínas Recombinantes/biossíntese , Proteínas Recombinantes/isolamento & purificação
18.
J Biol Chem ; 272(35): 21811-7, 1997 Aug 29.
Artigo em Inglês | MEDLINE | ID: mdl-9268311

RESUMO

Polyhistidine tags were added to the carboxyl termini of the two homologous subunits of yeast NAD+-specific isocitrate dehydrogenase (IDH). The tag in either the IDH1 or IDH2 subunit permits one-step affinity purification from yeast cellular extracts of catalytically active and allosterically responsive holoenzyme. This expression system was used to investigate subunit-specific contributions of residues with putative functions in adenine nucleotide binding. The primary effect of simultaneous replacement of the adjacent Asp-279 and Ile-280 residues in IDH1 with alanines is a dramatic loss of activation by AMP. In contrast, alanine replacement of the homologous Asp-286 and Ile-287 residues in IDH2 does not alter the allosteric response to AMP, but produces a 160-fold reduction in Vmax due to a 70-fold increase in the S0.5 value for NAD+. These results suggest that the targeted aspartate/isoleucine residues may contribute to regulator binding in IDH1 and to cofactor binding in IDH2, i.e. that these homologous residues are located in regions that have evolved for binding the adenine nucleotide components of different ligands. In other mutant enzymes, an alanine replacement of Asp-191 in IDH1 eliminates measurable catalytic activity, and a similar substitution of the homologous Asp-197 in IDH2 produces pleiotropic catalytic effects. A model is presented for the primary function of IDH2 in catalysis and of IDH1 in regulation, with crucial roles for these single aspartate residues in the communication and functional interdependence of the two subunits.


Assuntos
Isocitrato Desidrogenase/genética , Saccharomyces cerevisiae/enzimologia , Sequência de Aminoácidos , Histidina/metabolismo , Isocitrato Desidrogenase/isolamento & purificação , Cinética , Dados de Sequência Molecular , Mutagênese Sítio-Dirigida , Conformação Proteica
19.
Arch Biochem Biophys ; 344(1): 53-60, 1997 Aug 01.
Artigo em Inglês | MEDLINE | ID: mdl-9244381

RESUMO

Eukaryotic cells contain highly homologous isozymes of malate dehydrogenase which catalyze the same reaction in different cellular compartments. To examine whether the metabolic functions of these isozymes are interchangeable, we have altered the cellular localization of mitochondrial malate dehydrogenase (MDH1) in yeast. Since a previous study showed that removal of the targeting presequence from MDH1 does not prevent mitochondrial import in vivo, we tested the role of a putative cryptic targeting sequence near the amino terminus of the mature polypeptide. Three residues in this region were changed to residues present in analogous positions in the other two yeast MDH isozymes. Alone, these replacements did not affect activity or localization of MDH1 but, in combination with deletion of the presequence, prevented mitochondrial import in vivo. Measurable levels of the resulting cytosolic form of MDH1 were low with expression from a centromere-based plasmid but were comparable to normal cellular levels with expression from a multicopy plasmid. The cytosolic form of MDH1 restored the ability of a deltaMDH1 disruption strain to grow on ethanol or acetate, suggesting that mitochondrial localization of MDH1 is not essential for its function in the TCA cycle. This TCA cycle function observed for the cytosolic form of MDH1 is unique to that isozyme since overexpression of MDH2 and of a cytosolic form of MDH3 in a deltaMDH1 strain failed to restore growth. Finally, only partial restoration of growth of a deltaMDH2 disruption mutant was attained with the cytosolic form of MDH1, suggesting that MDH2 may also have unique metabolic functions.


Assuntos
Malato Desidrogenase/química , Malato Desidrogenase/metabolismo , Mitocôndrias/enzimologia , Sinais Direcionadores de Proteínas/química , Saccharomyces cerevisiae/enzimologia , Sequência de Aminoácidos , Citosol/enzimologia , Regulação Fúngica da Expressão Gênica , Immunoblotting , Malato Desidrogenase/genética , Dados de Sequência Molecular , Mutagênese , Sinais Direcionadores de Proteínas/genética , Saccharomyces cerevisiae/crescimento & desenvolvimento , Alinhamento de Sequência , Transformação Genética
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