QTLs and Candidate Genes Associated with Semen Traits in Merino Sheep.

Ram semen traits play a significant role in conception outcomes, which in turn may influence reproductive efficiency and the overall productivity and profitability of sheep enterprises. Since hundreds of ewes may be inseminated from a single ejaculate, it is important to evaluate semen quality prior to use in sheep breeding programs. Given that semen traits have been found to be heritable, genetic variation likely contributes to the variability observed in these traits. Identifying such genetic variants could provide novel insights into the molecular mechanisms underlying variability in semen traits. Therefore, this study aimed to identify quantitative trait loci (QTLs) associated with semen traits in Merino sheep. A genome-wide association study (GWAS) was undertaken using 4506 semen collection records from 246 Merino rams collected between January 2002 and May 2021. The R package RepeatABEL was used to perform a GWAS for semen volume, gross motility, concentration, and percent post-thaw motility. A total of 35 QTLs, located on 16 Ovis aries autosomes (OARs), were significantly associated with either of the four semen traits in this study. A total of 89, 95, 33, and 73 candidate genes were identified, via modified Bonferroni, within the QTLs significantly associated with volume, gross motility, concentration, and percent post-thaw motility, respectively. Among the candidate genes identified, SORD, SH2B1, and NT5E have been previously described to significantly influence spermatogenesis, spermatozoal motility, and high percent post-thaw motility, respectively. Several candidate genes identified could potentially influence ram semen traits based on existing evidence in the literature. As such, validation of these putative candidates may offer the potential to develop future strategies to improve sheep reproductive efficiency. Furthermore, Merino ram semen traits are lowly heritable (0.071-0.139), and thus may be improved by selective breeding.

Heritability and Genetic Parameters for Semen Traits in Australian Sheep.

Semen characteristics including volume, gross motility, spermatozoal concentration, and percent post-thaw motility are routinely assessed to determine the quality and quantity of an ejaculate prior to use in artificial breeding programs. Currently, artificial breeding programs in sheep place relatively little emphasis on ram-side factors, such as the fertilising potential of an ejaculate, which may contribute to variability in conception outcomes. Estimating genetic parameters for ejaculate quality and quantity traits could provide insights into whether selective breeding can be used to improve such ram-side traits, improving ovine reproductive performance and farm profitability. Therefore, in this study, a total of 11,470 ejaculate records, including data for ejaculate volume, gross motility, spermatozoal concentration, and percent post-thaw motility, collected over a 20-year period was used to estimate genetic parameters in sheep. Univariate and bivariate mixed model analysis was performed including a variety of fixed effects such as breed, age at collection, centre of collection, collection number, season of collection, and method of collection; and the permanent environmental effects associated with each ram, stud and year of collection, and the breeding value of rams included as random effects. The heritability for ejaculate volume, gross motility, concentration, and percent post-thaw motility was estimated to be 0.161, 0.170, 0.089, and 0.081. Repeatability estimates were moderate, ranging between 0.4126 and 0.5265. Overall, results indicate that semen traits are lowly heritable and moderately repeatable, indicating that these traits are significantly influenced by environmental variables.

Characterization of Breed Specific Differences in Spermatozoal Transcriptomes of Sheep in Australia.

Reduced reproductive efficiency results in economic losses to the Australian sheep industry. Reproductive success, particularly after artificial insemination, is dependent on a number of contributing factors on both ewe and ram sides. Despite considerable emphasis placed on characterising ewe side contributions, little emphasis has been placed on characterising ram side contributions to conception success. Over 14,000 transcripts are in spermatozoa of other species, which are transferred to the ova on fertilisation. These transcripts conceivably influence early embryonic development and whether conception is successful. Semen was collected (n = 45) across three breeds; Merino, Dohne, and Poll Dorset. Following collection, each ejaculate was split in two; an aliquot was assessed utilising Computer Assisted Semen Analysis (CASA) and the remaining was utilised for RNA extraction and subsequent next-generation sequencing. Overall, 754 differentially expressed genes were identified in breed contrasts and contrast between ejaculates of different quality. Downstream analysis indicated that these genes could play significant roles in a broad range of physiological functions, including maintenance of spermatogenesis, fertilisation, conception, embryonic development, and offspring production performance. Overall results provide evidence that the spermatozoal transcriptome could be a crucial contributing factor in improving reproductive performance as well as in the overall productivity and profitability of sheep industries.