Population distribution and causes of mortality of smooth-coated otters, Lutrogale perspicillata, in Singapore.

Smooth-coated otters (Lutrogale perspicillata) were transient in Singapore before one resident family group was observed in 1998, presumably having recolonized from Peninsular Malaysia. A population survey in 2017 revealed a minimum of 11 groups and 79 individuals. Since then, movements of otter groups within urban areas have led to increasing numbers of human-otter encounters, including conflicts. We determined the current abundance, population structure, and distribution of smooth-coated otters in Singapore. We assessed seven sampling zones nationwide through verified sighting records and social media. Mortality records from 2019 to 2021 were sourced from the Otter Working Group and Wildlife Reserves Singapore. In early 2021, there were a minimum of 17 groups and 170 individuals. Groups ranged from 2 to 24 individuals. Smooth-coated otters occupy coastal areas, waterways, reservoirs, and sites within the city center in urban gardens and ponds. Following territorial conflicts at waterways, smooth-coated otter groups moved into the urban matrix. Vehicle collisions are the main cause of mortality and are frequent at dams separating freshwater and coastal habitats. While there is a clear increase in smooth-coated otter numbers since 2017, there remain multiple natural and human-caused threats to otter persistence.

Migration and non-breeding ecology of the Yellow-breasted Chat Icteria virens.

Detailed information spanning the full annual cycle is lacking for most songbird populations. We examined breeding, migration, and non-breeding sites for the Yellow-breasted Chat (Icteria virens, chat). We deployed archival GPS tags and light-level geolocators on breeding chats in British Columbia and light-level geolocators in California from 2013 to 2017 to determine migration routes and non-breeding sites. We examined whether chats overwintered in protected areas and characterized the percent of land cover within 1 km. We used a combination of genetics and stable hydrogen isotopes from feathers collected on non-breeding chats in Nayarit, Mexico (2017-2019) and migrating chats in Chiapas, Mexico (2018) and Veracruz, Mexico (2014-2015) to determine subspecies and infer breeding location. Endangered chats in British Columbia followed the Pacific Flyway and spent the non-breeding period in Sinaloa and Nayarit, Mexico. Two out of five chats spent the non-breeding period in protected areas, and the most common landcover type used was tropical or subtropical broadleaf deciduous forest. We found no mixing of eastern and western chats in our Mexico sites, suggesting strong migratory connectivity at the subspecies level. Western chats likely originating from multiple breeding latitudes spent the non-breeding period in Nayarit. Eastern Yellow-breasted Chats likely breeding across various latitudes migrated through Veracruz and Chiapas. Our results provide precise migration routes and non-breeding locations, and describe habitat cover types for chats, notably an endangered population in British Columbia, which may be valuable for habitat protection and conservation efforts. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1007/s10336-021-01931-8.

Mercury toxicity risk and corticosterone levels across the breeding range of the Yellow-breasted Chat.

Mercury (Hg) is an environmental contaminant that can negatively impact human and wildlife health. For songbirds, Hg risk may be elevated near riparian habitats due to the transfer of methylmercury (MeHg) from aquatic to terrestrial food webs. We measured Hg levels in tail feathers sampled across the breeding range of the Yellow-breasted Chat (Icteria virens), a riparian songbird species of conservation concern. We assessed the risk of Hg toxicity based on published benchmarks. Simultaneously, we measured corticosterone, a hormone implicated in the stress response system, released via the hypothalamus-pituitary-adrenal axis. To better understand range-wide trends in Hg and corticosterone, we examined whether age, sex, subspecies, or range position were important predictors. Lastly, we examined whether Hg and corticosterone were correlated. Hg levels in chats were relatively low: 0.30 ± 0.02 µg/g dry weight. 148 out of 150 (98.6%) had Hg levels considered background, and 2 (1.6%) had levels considered low toxicity risk. Hg levels were similar between sexes and subspecies. Younger chats (<1 year) had higher Hg levels than older chats (>1 year). Hg levels were lowest in the northern and central portion of the eastern subspecies' range. Corticosterone concentrations in feathers averaged 3.68 ± 0.23 pg/mm. Corticosterone levels were similar between ages and sexes. Western chats had higher levels of corticosterone than eastern chats. Hg and corticosterone were not correlated, suggesting these low Hg burdens did not affect the activity of the hypothalamus-pituitary-adrenal axis. Altogether, the chat has low Hg toxicity risk across its breeding range, despite living in riparian habitats.

Post-fire movements of Pacific marten (Martes caurina) depend on the severity of landscape change.

BACKGROUND: Wildfires and forestry activities such as post-fire salvage logging are altering North American forests on a massive scale. Habitat change and fragmentation on forested landscapes may threaten forest specialists, such as Pacific marten (Martes caurina), that require closed, connected, and highly structured habitats. Although marten use burned landscapes, it is unclear how these animals respond to differing burn severities, or how well they tolerate additional landscape change from salvage logging. METHODS: We used snow tracking and GPS collars to examine marten movements in three large burns in north-central Washington, USA (burned in 2006) and central British Columbia, Canada (burned in 2010 and 2017). We also assessed marten habitat use in relation to areas salvage-logged in the 2010 burn. We evaluated marten path characteristics in relation to post-fire habitat quality, including shifts in behaviour when crossing severely-disturbed habitats. Using GPS locations, we investigated marten home range characteristics and habitat selection in relation to forest cover, burn severity, and salvage logging. RESULTS: Marten in the 2006 burn shifted from random to directed movement in areas burned at high severity; in BC, they chose highly straight paths when crossing salvage-blocks and meadows. Collared marten structured their home ranges around forest cover and burn severity, avoiding sparsely-covered habitats and selecting areas burned at low severity. Marten selected areas farther from roads in both Washington and BC, selected areas closer to water in the 2006 burn, and strongly avoided salvage-logged areas of the 2010 burn. Marten home ranges overlapped extensively, including two males tracked concurrently in the 2010 burn. CONCLUSIONS: Areas burned at low severity provide critical habitat for marten post-fire. Encouragingly, our results indicate that both male and female marten can maintain home ranges in large burns and use a wide range of post-fire conditions. However, salvage-logged areas are not suitable for marten and may represent significant barriers to foraging and dispersal.

Niche partitioning of avian predators in northern grasslands amended by biosolids.

Many food webs are affected by bottom-up nutrient addition, as additional biomass or productivity at a given trophic level can support more consumers. In turn, when prey are abundant, predators may converge on the same diets rather than partitioning food resources. Here, we examine the diets and habitat use of predatory and omnivorous birds in response to biosolids amendment of northern grasslands used as grazing range for cattle in British Columbia, Canada. From an ecosystem management perspective, we test whether dietary convergence occurred and whether birds preferentially used the pastures with biosolids. Biosolids treatments increased Orthoptera densities and our work occurred during a vole (Microtus spp.) population peak, so both types of prey were abundant. American Kestrels (Falco sparverius) consumed both small mammals and Orthoptera. Short-eared Owls (Asio flammeus) and Long-eared owls (Asio otus) primarily ate voles (>97% of biomass consumed) as did Northern Harriers (Circus hudsonius, 88% vole biomass). Despite high dietary overlap, these species had minimal spatial overlap, and Short-eared Owls strongly preferred pastures amended with biosolids. Common Ravens (Corvus corax), Black-billed Magpies (Pica hudsonia), and American Crows (Corvus brachyrhynchos) consumed Orthoptera, Coleoptera, vegetation, and only a few small mammals; crows avoided pastures with biosolids. Thus, when both insect and mammalian prey were abundant, corvids maintained omnivorous diets, whereas owls and Harriers specialized on voles. Spatial patterns were more complex, as birds were likely responding to prey abundance, vegetation structure, and other birds in this consumer guild.

Migration ecology of western gray catbirds.

BACKGROUND: For many songbirds in North America, we lack movement details about the full annual cycle, notably outside the breeding season. Understanding how populations are linked spatially between breeding and overwintering periods (migratory connectivity) is crucial to songbird conservation and management. We assessed migratory connectivity for 2 breeding populations of Gray Catbirds (Dumetella carolinensis) west of and within the Rocky Mountains by determining migration routes, stopover sites, and overwintering locations. Additionally, we compared apparent annual survivorship for both populations. METHODS: We deployed 39 archival light-level geolocators and 21 Global Positioning System (GPS) tags on catbirds in the South Okanagan Valley, British Columbia, Canada, and 32 geolocators and 52 GPS tags in the Bitterroot River Valley, Montana, USA. These devices allowed us to determine migration routes, stopover sites, overwintering locations, and migratory connectivity. Migratory connectivity was quantified using Mantel's correlation. We used mark-recapture of colour banded catbirds in both sites to estimate apparent annual survivorship. RESULTS: We retrieved 6 geolocators and 19 GPS tags with usable data. Gray Catbirds from both populations passed through the Rocky Mountains eastward before heading south towards their overwintering locations in northeastern Mexico and Texas. Stopover sites during fall migration occurred primarily in Montana, Kansas, Oklahoma, and Arkansas. Overwintering locations spanned Texas and 5 states in northeastern Mexico. Individual catbirds used up to 4 distinct sites during the overwintering period. Catbirds separated by almost 500 km during the breeding season overlapped during the non-breeding season, suggesting weak migratory connectivity among western populations (Mantel's correlation = 0.013, P-value = 0.41). Catbird apparent annual survivorship estimates were higher in British Columbia (0.61 ± 0.06 females; 0.64 ± 0.05 males) than in Montana (0.34 ± 0.05 females; 0.43 ± 0.04 males), though the main driver of these differences remain unclear. CONCLUSIONS: Our results provide high precision geographic details during the breeding, migration, and overwintering phases of the annual cycle for western Gray Catbirds. Notably, we found that western catbirds followed the Central Flyway as opposed to the Pacific Flyway. We document that catbirds used multiple sites over winter, contrary to the popular belief that this phase of the annual cycle is stationary for most songbirds.

Error rates in wildlife image classification.

We address the comments made by Thornton et al. (Ecology and Evolution, 2019) in response to our recent article on measuring the agreement among experts in classifying camera images of bobcats and Canada lynx.

A winter energetics model for bobcats in a deep snow environment.

Understanding basic energetic requirements of wildlife species is critical to evaluate how individuals persist in their current environments as well as to forecast responses to changed climates or habitats. Indeed, northern range limits are often thought to reflect harsh abiotic conditions that exceed the capacity of individuals to stay in energetic balance. Bobcats (Lynx rufus) occur across much of North America; at northern latitudes, they face winter challenges such as deep snows, cold temperatures, and possible food scarcity. We developed an energetics model from field data on movements, body mass, and observed diet of bobcats in mountains of northwest Montana, then evaluated overwinter prey requirements that would enable bobcats to stay in energy balance in this difficult environment. Our model indicated average daily energy expenditures were ~ 1.41× basal metabolic rate. For 90 days from December to February, a 10.5 kg bobcat consuming prey items in proportion with the observed diet for bobcats in this area would need about 2.1 kg of deer (Odocoileus spp.), 7 snowshoe hares (Lepus americanus), 155 red squirrels (Tamiasciurus hudsonicus), 9 woodrats (Neotoma cinerea), and 250 small rodents (Cricetidae). Bobcats have considerable flexibility in diet, movements, and both timing and duration of daily activity to adjust their energetic expenditures in winter.

Measuring agreement among experts in classifying camera images of similar species.

Camera trapping and solicitation of wildlife images through citizen science have become common tools in ecological research. Such studies collect many wildlife images for which correct species classification is crucial; even low misclassification rates can result in erroneous estimation of the geographic range or habitat use of a species, potentially hindering conservation or management efforts. However, some species are difficult to tell apart, making species classification challenging-but the literature on classification agreement rates among experts remains sparse. Here, we measure agreement among experts in distinguishing between images of two similar congeneric species, bobcats (Lynx rufus) and Canada lynx (Lynx canadensis). We asked experts to classify the species in selected images to test whether the season, background habitat, time of day, and the visible features of each animal (e.g., face, legs, tail) affected agreement among experts about the species in each image. Overall, experts had moderate agreement (Fleiss' kappa = 0.64), but experts had varying levels of agreement depending on these image characteristics. Most images (71%) had ≥1 expert classification of "unknown," and many images (39%) had some experts classify the image as "bobcat" while others classified it as "lynx." Further, experts were inconsistent even with themselves, changing their classifications of numerous images when they were asked to reclassify the same images months later. These results suggest that classification of images by a single expert is unreliable for similar-looking species. Most of the images did obtain a clear majority classification from the experts, although we emphasize that even majority classifications may be incorrect. We recommend that researchers using wildlife images consult multiple species experts to increase confidence in their image classifications of similar sympatric species. Still, when the presence of a species with similar sympatrics must be conclusive, physical or genetic evidence should be required.

Regional differences in winter diets of bobcats in their northern range.

When generalist predators have wide geographic ranges, diets may differ dramatically, largely as a result of differing prey communities. Bobcats (Lynx rufus) are widely distributed across southern North America, with their northern range edge occurring in southern Canada and in the northern US states. Within this northern range, bobcats are exposed to cold and snowy winters and a limited number of prey species, conditions that are atypical for most of the range of bobcats. We examined winter diets of bobcats in high elevation and very snowy forests in northwest Montana to determine how these generalist predators managed in these harsh conditions in comparison with elsewhere in the northern range. Bobcats consumed five major prey types: Red squirrels (Tamiasciurus hudsonicus) and Cricetid rodents comprised >78% of the dietary biomass, whereas the larger snowshoe hares (Lepus americanus), deer (Odocoileus spp.), and grouse were consumed much less often. The standardized niche breadth of bobcat diets was 0.29; bobcats from across the northern range also routinely ate multiple prey species, although Eastern bobcats appear to consume more lagomorphs than do Western bobcats. These results indicate that bobcats remain generalists in difficult winter conditions while preying primarily on small-bodied prey, although bobcats have highly variable diets across their northern range.

Navigating fragmented landscapes: Canada lynx brave poor quality habitats while traveling.

Anthropogenic and natural habitat fragmentation inhibit movement of animals through landscapes. An important challenge for connectivity conservation is determining which conditions facilitate or limit movements, so that these areas can be prioritized for protection or restoration. We examine Canada lynx Lynx canadensis habitat connectivity in the fragmented North Cascade Mountains of Washington, as an example of a highly mobile species that is specialized both on prey and in habitat needs. We identify lynx Habitat Concentration Areas based on Core Habitat Models, parameterize resistance surfaces from our Matrix Habitat Model, and develop linkages of habitat lynx use to move between patches of high quality habitat. We identify a number of linkages for lynx comprised of habitat conditions that differed from high quality core patches identified from our habitat modeling. Radio-locations from lynx confirm lower-quality habitats of low resistance to movement were used by traveling lynx. Our results thus suggest traveling lynx do indeed use a much broader range of habitats than do lynx moving within core areas. For lynx in the North Cascades, our results show that maintaining connectivity will require preserving habitats and linkages that would previously have been deemed unsuitable for lynx. Maintaining connectivity for lynx is particularly important given the many recent large wildfires in this region that have reduced the number of mature forest stands that form prime habitat for lynx. Policy implications. Our results strongly suggest that habitat connectivity models should be based on empirical information of animal location data and focused on matrix habitat analysis. Traveling predators use a wide suite of habitats, resulting in more and broader linkage zones that should inform conservation efforts. Failure to identify these areas of functional connectivity could result in the oversight of usable linkage zones, leaving them without protection and vulnerable to degradation.

Genetic sampling for estimating density of common species.

Understanding population dynamics requires reliable estimates of population density, yet this basic information is often surprisingly difficult to obtain. With rare or difficult-to-capture species, genetic surveys from noninvasive collection of hair or scat has proved cost-efficient for estimating densities. Here, we explored whether noninvasive genetic sampling (NGS) also offers promise for sampling a relatively common species, the snowshoe hare (Lepus americanus Erxleben, 1777), in comparison with traditional live trapping. We optimized a protocol for single-session NGS sampling of hares. We compared spatial capture-recapture population estimates from live trapping to estimates derived from NGS, and assessed NGS costs. NGS provided population estimates similar to those derived from live trapping, but a higher density of sampling plots was required for NGS. The optimal NGS protocol for our study entailed deploying 160 sampling plots for 4 days and genotyping one pellet per plot. NGS laboratory costs ranged from approximately $670 to $3000 USD per field site. While live trapping does not incur laboratory costs, its field costs can be considerably higher than for NGS, especially when study sites are difficult to access. We conclude that NGS can work for common species, but that it will require field and laboratory pilot testing to develop cost-effective sampling protocols.

Canada lynx use of burned areas: Conservation implications of changing fire regimes.

A fundamental problem in ecology is forecasting how species will react to major disturbances. As the climate warms, large, frequent, and severe fires are restructuring forested landscapes at large spatial scales, with unknown impacts on imperilled predators. We use the United States federally Threatened Canada lynx as a case study to examine how predators navigate recent large burns, with particular focus on habitat features and the spatial configuration (e.g., distance to edge) that enabled lynx use of these transformed landscapes. We coupled GPS location data of lynx in Washington in an area with several recent large fires and a number of GIS layers of habitat data to develop models of lynx habitat selection in recent burns. Random Forest habitat models showed lynx-selected islands of forest skipped by large fires, residual vegetation, and areas where some trees survived to use newly burned areas. Lynx used burned areas as early as 1 year postfire, which is much earlier than the 2-4 decades postfire previously thought for this predator. These findings are encouraging for predator persistence in the face of fires, but increasingly severe fires or management that reduces postfire residual trees or slow regeneration will likely jeopardize lynx and other predators. Fire management should change to ensure heterogeneity is retained within the footprint of large fires to enable viable predator populations as fire regimes worsen with climate change.

Rethinking biogeographic patterns: high local variation in relation to latitudinal clines for a widely distributed species.

Wide-ranging species typically differ morphologically across their ranges. Bergmann's rule suggests that taxa in colder environments are bigger than related taxa in warmer locations. We examined 767 painted turtles (Chrysemys picta) in ten populations near their northwestern range edge in south-central British Columbia, Canada, in conjunction with previous data, to test the hypotheses of (1) a Bergmann's latitudinal cline, and (2) that males and females show similar latitudinal variation in size. We also explicitly test the impact of high local variation on range-wide inference. Female and male turtles showed similar latitudinal clines in body size; the degree of sexual dimorphism did not change across the range. Importantly, local variation in sexual dimorphism across ponds was nearly as high as the previously observed continental variation. Indeed, we found both the lowest and the highest degrees of sexual size dimorphism that have ever been reported for this species. Further, differing criteria in the literature for identifying mature females compound the difficulty of interpreting latitudinal clines in size or dimorphism. Our results highlight the need for much more systematic local and regional sampling as inputs for latitudinal or other comparative analyses such as Rensch's rule because insufficient sampling of high local variation may mask important ecological and evolutionary patterns.

Conservation implications of the evolutionary history and genetic diversity hotspots of the snowshoe hare.

With climate warming, the ranges of many boreal species are expected to shift northward and to fragment in southern peripheral ranges. To understand the conservation implications of losing southern populations, we examined range-wide genetic diversity of the snowshoe hare (Lepus americanus), an important prey species that drives boreal ecosystem dynamics. We analysed microsatellite (8 loci) and mitochondrial DNA sequence (cytochrome b and control region) variation in almost 1000 snowshoe hares. A hierarchical structure analysis of the microsatellite data suggests initial subdivision in two groups, Boreal and southwestern. The southwestern group further splits into Greater Pacific Northwest and U.S. Rockies. The genealogical information retrieved from mtDNA is congruent with the three highly differentiated and divergent groups of snowshoe hares. These groups can correspond with evolutionarily significant units that might have evolved in separate refugia south and east of the Pleistocene ice sheets. Genetic diversity was highest at mid-latitudes of the species' range, and genetic uniqueness was greatest in southern populations, consistent with substructuring inferred from both mtDNA and microsatellite analyses at finer levels of analysis. Surprisingly, snowshoe hares in the Greater Pacific Northwest mtDNA lineage were more closely related to black-tailed jackrabbits (Lepus californicus) than to other snowshoe hares, which may result from secondary introgression or shared ancestral polymorphism. Given the genetic distinctiveness of southern populations and minimal gene flow with their northern neighbours, fragmentation and loss of southern boreal habitats could mean loss of many unique alleles and reduced evolutionary potential.

Effect of habitat area and isolation on fragmented animal populations.

Habitat destruction has driven many once-contiguous animal populations into remnant patches of varying size and isolation. The underlying framework for the conservation of fragmented populations is founded on the principles of island biogeography, wherein the probability of species occurrence in habitat patches varies as a function of patch size and isolation. Despite decades of research, the general importance of patch area and isolation as predictors of species occupancy in fragmented terrestrial systems remains unknown because of a lack of quantitative synthesis. Here, we compile occupancy data from 1,015 bird, mammal, reptile, amphibian, and invertebrate population networks on 6 continents and show that patch area and isolation are surprisingly poor predictors of occupancy for most species. We examine factors such as improper scaling and biases in species representation as explanations and find that the type of land cover separating patches most strongly affects the sensitivity of species to patch area and isolation. Our results indicate that patch area and isolation are indeed important factors affecting the occupancy of many species, but properties of the intervening matrix should not be ignored. Improving matrix quality may lead to higher conservation returns than manipulating the size and configuration of remnant patches for many of the species that persist in the aftermath of habitat destruction.

Overwinter mass loss of snowshoe hares in the Yukon: starvation, stress, adaptation or artefact?

1. Overwinter mass loss can reduce energetic requirements in mammals (Dehnel's phenomenon). Alternatively, mass loss can result from food limitation or high predation risk. 2. We use data from fertilizer, food-supplementation and predator-exclusion experiments in the Yukon during a population cycle from 1986 to 1996 to test the causes of overwinter mass loss by snowshoe hares (Lepus americanus). In all years, some hares on control sites gained mass overwinter. During the increase phase the majority gained mass, but in all other phases the majority lost mass. 3. Snowshoe hares weighing <1000 g in autumn always gained mass overwinter, as did the majority that weighed 1000-1400 g. Hares weighing >1800 g in autumn usually lost mass. 4. Snowshoe hares on the predator-exclosure + food site gained mass overwinter in all years. Hares on the food-supplementation sites lost mass during the decline but gained mass in all other phases. Fertilization had little effect on mass dynamics. 5. Snowshoe hares were more likely to lose mass during winters with low survival rates. Snowshoe hares on the predator-exclosure treatments were more likely to gain mass than were hares on control sites. 6. Overwinter mass loss was correlated with maximum snow depth. At equivalent snow depths, hares on food-supplemented areas lost 98 g (+/- 14.6 SE) less on average than hares on the controls and predator-exclosure treatment. 7. Bone-marrow fat was related to body mass and cause of death. Small hares had the lowest marrow fat. Hares killed by humans had higher marrow fat than those killed by predators; hares that simply died had the lowest marrow fat. Hares on food-supplemented sites had the highest kidney and marrow fat. 8. Overwinter-mass loss for snowshoe hares is explained interactively by winter conditions, food supply, predation risk and autumn mass. Some snowshoe hares lost mass overwinter in all years and on all treatments, suggesting that reducing body mass may facilitate survival, especially in cases where foraging costs are high energetically or increase predation risk.

Resolving critical habitat designation failures: reconciling law, policy, and biology.

The US. Endangered Species Act (ESA) requires designation of critical habitat concurrent with species listing. The US. Fish and Wildlife Service often has not designated critical habitat, based on the legal exceptions in the ESA of "not prudent" or "not determinable." This lack of habitat designation has led to numerous lawsuits and court orders to designate critical habitat for listed species. Court-mediated implementation of critical habitat is costly and delays listing for at-risk species. Legal, policy, judicial, and biological issues all contribute to the current inability of the law as enforced to lead to timely and cost-effective critical habitat designation. Although increased appropriations and delaying critical habitat designation until recovery planning have been proposed as solutions, we find that it will be essential to change the critical-habitat guidelines to a decision-analysis framework to make critical habitat scientifically and legally workable as a conservation